SHLD2P1 (shieldin complex subunit 2 pseudogene 1) - Rat Genome Database

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Gene: SHLD2P1 (shieldin complex subunit 2 pseudogene 1) Homo sapiens
Analyze
Symbol: SHLD2P1
Name: shieldin complex subunit 2 pseudogene 1
RGD ID: 1350093
HGNC Page HGNC:31425
Description: INTERACTS WITH aflatoxin B1; valproic acid
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: bA38L15.1; FAM35B; FAM35BP; FAM35EP; family with sequence similarity 35 member B, pseudogene; family with sequence similarity 35, member E, pseudogene; FLJ59018
Related Functional Gene: SHLD2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381046,610,472 - 46,651,976 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1046,610,474 - 46,652,025 (-)EnsemblGRCh38hg38GRCh38
GRCh371046,897,641 - 46,939,145 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361046,897,648 - 46,939,149 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map10q11.22NCBI
HuRef1082,753,956 - 82,755,498 (+)NCBIHuRef
CHM1_11046,967,179 - 47,008,708 (+)NCBICHM1_1
T2T-CHM13v2.01047,496,904 - 47,538,407 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:7566098  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:349
Count of miRNA genes:300
Interacting mature miRNAs:306
Transcripts:ENST00000475914, ENST00000497389, ENST00000539388
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 5 5 5 3 2 1
Low 136 66 342 281 310 285 543 52 185 243 518 327 6 12 207 3
Below cutoff 2129 2381 1245 327 1131 174 3525 1708 2695 160 891 1180 155 1148 2312 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000475914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1046,625,929 - 46,635,145 (-)Ensembl
RefSeq Acc Id: ENST00000497389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1046,610,474 - 46,652,025 (-)Ensembl
RefSeq Acc Id: NR_027632
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381046,610,472 - 46,651,976 (-)NCBI
GRCh371046,897,641 - 46,939,145 (+)RGD
HuRef1082,753,956 - 82,755,498 (+)ENTREZGENE
CHM1_11046,967,179 - 47,008,708 (+)NCBI
T2T-CHM13v2.01047,496,904 - 47,538,407 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC SHLD2P1 COSMIC
Ensembl Genes ENSG00000165874 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000497389 ENTREZGENE
GTEx ENSG00000165874 GTEx
HGNC ID HGNC:31425 ENTREZGENE
Human Proteome Map SHLD2P1 Human Proteome Map
NCBI Gene 414241 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-24 SHLD2P1  shieldin complex subunit 2 pseudogene 1  FAM35BP  family with sequence similarity 35 member B, pseudogene  Symbol and/or name change 5135510 APPROVED
2016-04-01 FAM35BP  family with sequence similarity 35 member B, pseudogene  FAM35EP  family with sequence similarity 35, member E, pseudogene  Data merged from RGD:7206872 737654 PROVISIONAL
2015-11-24 FAM35BP  family with sequence similarity 35 member B, pseudogene    family with sequence similarity 35, member B, pseudogene  Symbol and/or name change 5135510 APPROVED
2013-02-06 FAM35BP  family with sequence similarity 35, member B, pseudogene  FAM35B  family with sequence similarity 35, member B  Symbol and/or name change 5135510 APPROVED