DEFA8P (defensin alpha 8, pseudogene) - Rat Genome Database

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Gene: DEFA8P (defensin alpha 8, pseudogene) Homo sapiens
Analyze
Symbol: DEFA8P
Name: defensin alpha 8, pseudogene
RGD ID: 1349881
HGNC Page HGNC:31799
Description: INTERACTS WITH sodium arsenite
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: DEFAP1; defensin, alpha 8, pseudogene
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3886,950,726 - 6,951,599 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl86,950,726 - 6,951,599 (-)EnsemblGRCh38hg38GRCh38
GRCh3786,808,248 - 6,809,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3686,795,176 - 6,799,755 (-)NCBINCBI36Build 36hg18NCBI36
Celera86,784,553 - 6,789,132 (-)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef86,587,771 - 6,588,644 (-)NCBIHuRef
CHM1_186,897,362 - 6,898,235 (-)NCBICHM1_1
T2T-CHM13v2.086,705,395 - 6,706,268 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:15494476   PMID:15588320  


Genomics

Variants

.
Variants in DEFA8P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:109
Interacting mature miRNAs:109
Transcripts:ENST00000457582
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 103 116 1 4
Low 22 448 35 16 567 16 24 13 9 78 163 12 8
Below cutoff 87 255 124 65 243 51 167 87 226 28 225 211 14 83 88

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000457582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl86,950,726 - 6,951,599 (-)Ensembl
RefSeq Acc Id: NR_073407
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3886,950,726 - 6,951,599 (-)NCBI
GRCh3786,808,248 - 6,809,121 (-)NCBI
HuRef86,587,771 - 6,588,644 (-)NCBI
CHM1_186,897,362 - 6,898,235 (-)NCBI
T2T-CHM13v2.086,705,395 - 6,706,268 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC DEFA8P COSMIC
Ensembl Genes ENSG00000223629 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000457582 ENTREZGENE
GTEx ENSG00000223629 GTEx
HGNC ID HGNC:31799 ENTREZGENE
Human Proteome Map DEFA8P Human Proteome Map
NCBI Gene 449491 ENTREZGENE
PharmGKB PA134967483 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 DEFA8P  defensin alpha 8, pseudogene    defensin, alpha 8 pseudogene  Symbol and/or name change 5135510 APPROVED