UBE2CP1 (ubiquitin conjugating enzyme E2 C pseudogene 1) - Rat Genome Database

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Gene: UBE2CP1 (ubiquitin conjugating enzyme E2 C pseudogene 1) Homo sapiens
Analyze
Symbol: UBE2CP1
Name: ubiquitin conjugating enzyme E2 C pseudogene 1
RGD ID: 1349785
HGNC Page HGNC:19670
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ubiquitin conjugating enzyme E2C pseudogene 1
Related Functional Gene: UBE2C  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381430,682,862 - 30,683,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1430,683,045 - 30,683,598 (-)EnsemblGRCh38hg38GRCh38
GRCh371431,152,068 - 31,152,856 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361430,221,719 - 30,222,692 (-)NCBINCBI36Build 36hg18NCBI36
Celera1411,017,844 - 11,018,632 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1411,269,617 - 11,270,405 (-)NCBIHuRef
CHM1_11431,151,599 - 31,152,387 (-)NCBICHM1_1
T2T-CHM13v2.01424,880,680 - 24,881,468 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:153
Interacting mature miRNAs:154
Transcripts:ENST00000557130
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 127 135 121 32 272 14 840 63 304 25 238 183 19 184 474 1
Below cutoff 1305 1266 856 231 585 119 2291 1017 1367 134 681 815 119 681 1411 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000557130
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1430,683,045 - 30,683,598 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC UBE2CP1 COSMIC
Ensembl Genes ENSG00000258648 Ensembl
GTEx ENSG00000258648 GTEx
HGNC ID HGNC:19670 ENTREZGENE
Human Proteome Map UBE2CP1 Human Proteome Map
NCBI Gene 326105 ENTREZGENE
PharmGKB PA134931593 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-21 UBE2CP1  ubiquitin conjugating enzyme E2 C pseudogene 1    ubiquitin conjugating enzyme E2C pseudogene 1  Symbol and/or name change 5135510 APPROVED
2015-11-24 UBE2CP1  ubiquitin conjugating enzyme E2C pseudogene 1    ubiquitin-conjugating enzyme E2C pseudogene 1  Symbol and/or name change 5135510 APPROVED