ENTR1P1 (ENTR1 pseudogene 1) - Rat Genome Database

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Gene: ENTR1P1 (ENTR1 pseudogene 1) Homo sapiens
Analyze
Symbol: ENTR1P1
Name: ENTR1 pseudogene 1
RGD ID: 1349476
HGNC Page HGNC:29375
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: SDCCAG3L; SDCCAG3P1; serologically defined colon cancer antigen 3 pseudogene 1
Related Functional Gene: ENTR1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381860,009,785 - 60,011,264 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1860,009,994 - 60,011,143 (-)EnsemblGRCh38hg38GRCh38
GRCh371857,677,017 - 57,678,496 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361855,828,098 - 55,829,386 (-)NCBINCBI36Build 36hg18NCBI36
Celera1854,395,254 - 54,396,342 (-)NCBICelera
Cytogenetic Map18q21.32NCBI
HuRef1854,386,535 - 54,387,623 (-)NCBIHuRef
CHM1_11857,672,820 - 57,673,908 (-)NCBICHM1_1
T2T-CHM13v2.01860,212,427 - 60,213,906 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:384
Count of miRNA genes:195
Interacting mature miRNAs:198
Transcripts:ENST00000412063, ENST00000589292
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 3 2 28 2 5 2 1 354 13 2
Below cutoff 202 137 138 51 340 35 559 140 186 35 123 207 20 95 298

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000589292
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1860,009,994 - 60,011,143 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ENTR1P1 COSMIC
Ensembl Genes ENSG00000256704 Ensembl
GTEx ENSG00000256704 GTEx
HGNC ID HGNC:29375 ENTREZGENE
Human Proteome Map ENTR1P1 Human Proteome Map
NCBI Gene 388478 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 ENTR1P1  ENTR1 pseudogene 1  SDCCAG3P1  serologically defined colon cancer antigen 3 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 SDCCAG3P1  serologically defined colon cancer antigen 3 pseudogene 1  SDCCAG3L  serologically defined colon cancer antigen 3-like  Symbol and/or name change 5135510 APPROVED