EIF4A1P1 (eukaryotic translation initiation factor 4A1 pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: EIF4A1P1 (eukaryotic translation initiation factor 4A1 pseudogene 1) Homo sapiens
Analyze
Symbol: EIF4A1P1
Name: eukaryotic translation initiation factor 4A1 pseudogene 1
RGD ID: 1348458
HGNC Page HGNC:3283
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EIF4A1P
Related Functional Gene: EIF4A1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382127,367,012 - 27,367,951 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2127,367,014 - 27,367,947 (-)EnsemblGRCh38hg38GRCh38
GRCh372128,739,331 - 28,740,270 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362127,661,102 - 27,662,242 (-)NCBINCBI36Build 36hg18NCBI36
Celera2113,922,506 - 13,923,473 (-)NCBICelera
Cytogenetic Map21q21.3NCBI
HuRef2114,143,752 - 14,144,719 (-)NCBIHuRef
CHM1_12128,301,357 - 28,302,324 (-)NCBICHM1_1
T2T-CHM13v2.02125,725,763 - 25,726,702 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10830953   PMID:19846067   PMID:24124411  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:99
Interacting mature miRNAs:99
Transcripts:ENST00000420241
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-143891  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372128,739,989 - 28,740,262UniSTSGRCh37
Build 362127,661,860 - 27,662,133RGDNCBI36
Celera2113,923,164 - 13,923,437RGD
Cytogenetic Map21q21.2UniSTS
HuRef2114,144,410 - 14,144,683UniSTS
TNG Radiation Hybrid Map217095.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 180 6 3 2 9 2 6 1
Below cutoff 531 330 247 56 140 42 970 468 375 51 302 225 14 478 535

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000420241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2127,367,014 - 27,367,947 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC EIF4A1P1 COSMIC
Ensembl Genes ENSG00000233300 Ensembl, ENTREZGENE
GTEx ENSG00000233300 GTEx
HGNC ID HGNC:3283 ENTREZGENE
Human Proteome Map EIF4A1P1 Human Proteome Map
NCBI Gene 54052 ENTREZGENE
PharmGKB PA27711 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 EIF4A1P1  eukaryotic translation initiation factor 4A1 pseudogene 1  EIF4A1P  eukaryotic translation initiation factor 4A, isoform 1, pseudogene  Symbol and/or name change 5135510 APPROVED