CKS1BP7 (CDC28 protein kinase regulatory subunit 1B pseudogene 7) - Rat Genome Database

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Gene: CKS1BP7 (CDC28 protein kinase regulatory subunit 1B pseudogene 7) Homo sapiens
Analyze
Symbol: CKS1BP7
Name: CDC28 protein kinase regulatory subunit 1B pseudogene 7
RGD ID: 1348442
HGNC Page HGNC:1999
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: CDC28 protein kinase regulatory subunit 1A; CKS1; CKS1A
Related Functional Gene: CKS1B  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38880,644,461 - 80,645,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl880,644,939 - 80,645,173 (-)EnsemblGRCh38hg38GRCh38
GRCh37881,556,696 - 81,557,451 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36881,719,154 - 81,720,070 (-)NCBINCBI36Build 36hg18NCBI36
Celera877,561,654 - 77,562,418 (-)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef877,046,567 - 77,047,331 (-)NCBIHuRef
CHM1_1881,608,912 - 81,609,676 (-)NCBICHM1_1
T2T-CHM13v2.0881,076,039 - 81,076,794 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8697818   PMID:15014502   PMID:15452136   PMID:15772084   PMID:17499794   PMID:18498131   PMID:18625720   PMID:19360356   PMID:19483727   PMID:19686743   PMID:19786724   PMID:28439706  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:98
Interacting mature miRNAs:98
Transcripts:ENST00000522230
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 6
Low 184 394 243 87 61 55 602 102 340 72 542 316 33 189 404 1
Below cutoff 700 787 507 190 173 108 1377 555 993 116 447 458 85 491 834 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000522230
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,644,939 - 80,645,173 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CKS1BP7 COSMIC
Ensembl Genes ENSG00000254331 Ensembl
GTEx ENSG00000254331 GTEx
HGNC ID HGNC:1999 ENTREZGENE
Human Proteome Map CKS1BP7 Human Proteome Map
NCBI Gene 137529 ENTREZGENE
PharmGKB PA35039 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 CKS1BP7  CDC28 protein kinase regulatory subunit 1B pseudogene 7  CKS1A  CDC28 protein kinase regulatory subunit 1A pseudogene  Symbol and/or name change 5135510 APPROVED