CD52 (CD52 molecule) - Rat Genome Database

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Gene: CD52 (CD52 molecule) Homo sapiens
Analyze
Symbol: CD52
Name: CD52 molecule
RGD ID: 1348187
HGNC Page HGNC:1804
Description: Involved in positive regulation of cytosolic calcium ion concentration. Predicted to be located in extracellular region and plasma membrane. Predicted to be active in sperm midpiece.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cambridge pathology 1 antigen; CAMPATH-1 antigen; CD52 antigen (CAMPATH-1 antigen); CDW52; CDW52 antigen (CAMPATH-1 antigen); EDDM5; epididymal secretory protein E5; epididymis secretory sperm binding protein Li 171mP; he5; HEL-S-171mP; human epididymis-specific protein 5
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,317,958 - 26,320,523 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,317,958 - 26,320,523 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,644,449 - 26,647,014 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,516,998 - 26,519,601 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,328,626 - 26,331,152NCBI
Celera125,040,730 - 25,043,334 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef124,898,510 - 24,901,114 (+)NCBIHuRef
CHM1_1126,757,615 - 26,760,215 (+)NCBICHM1_1
T2T-CHM13v2.0126,155,410 - 26,157,976 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP)
ammonium chloride  (ISO)
antirheumatic drug  (EXP)
Aroclor 1254  (ISO)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (ISO)
beta-naphthoflavone  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
cefaloridine  (ISO)
chlordecone  (ISO)
chloroprene  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (EXP)
cypermethrin  (ISO)
D-glucose  (ISO)
D-penicillamine  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (EXP)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (ISO)
diquat  (ISO)
disodium selenite  (EXP)
diuron  (EXP)
dorsomorphin  (EXP)
entinostat  (EXP)
folic acid  (ISO)
fructose  (ISO)
glucose  (ISO)
glyphosate  (ISO)
hexachlorobenzene  (ISO)
hydrogen peroxide  (EXP)
isotretinoin  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
metformin  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (EXP)
N-(6-acetamidohexyl)acetamide  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (EXP)
nitrates  (ISO)
nitrofen  (ISO)
ozone  (EXP,ISO)
panobinostat  (EXP)
paracetamol  (ISO)
pentanal  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
propanal  (EXP)
raloxifene  (ISO)
SB 431542  (EXP)
silicon dioxide  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vorinostat  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1352921   PMID:1711975   PMID:7685389   PMID:7688956   PMID:7718516   PMID:7890742   PMID:8223854   PMID:8366859   PMID:8418812   PMID:8418821   PMID:8977262   PMID:9361796  
PMID:10524207   PMID:10561018   PMID:11257744   PMID:11420384   PMID:11860230   PMID:12113063   PMID:12477932   PMID:14662784   PMID:15489334   PMID:16266689   PMID:16796779   PMID:16797237  
PMID:17118455   PMID:17145843   PMID:17428002   PMID:17624925   PMID:18647288   PMID:19794084   PMID:20349607   PMID:21552305   PMID:21873635   PMID:22386526   PMID:22491736   PMID:24623722  
PMID:24799522   PMID:29427418   PMID:29997173   PMID:32296183   PMID:32513696   PMID:32875608   PMID:33658999   PMID:33705353   PMID:37314354   PMID:37975535  


Genomics

Comparative Map Data
CD52
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,317,958 - 26,320,523 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,317,958 - 26,320,523 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,644,449 - 26,647,014 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,516,998 - 26,519,601 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,328,626 - 26,331,152NCBI
Celera125,040,730 - 25,043,334 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef124,898,510 - 24,901,114 (+)NCBIHuRef
CHM1_1126,757,615 - 26,760,215 (+)NCBICHM1_1
T2T-CHM13v2.0126,155,410 - 26,157,976 (+)NCBIT2T-CHM13v2.0
Cd52
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394133,820,849 - 133,822,384 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4133,809,759 - 133,822,393 (-)EnsemblGRCm39 Ensembl
GRCm384134,093,538 - 134,095,073 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,082,448 - 134,095,082 (-)EnsemblGRCm38mm10GRCm38
MGSCv374133,649,453 - 133,650,988 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364133,365,615 - 133,367,138 (-)NCBIMGSCv36mm8
Celera4132,274,561 - 132,276,096 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.5NCBI
Cd52
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,603,537 - 151,605,096 (-)NCBIGRCr8
mRatBN7.25146,319,789 - 146,321,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5146,319,969 - 146,321,348 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5149,023,358 - 149,024,918 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05150,792,981 - 150,794,541 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05150,779,571 - 150,781,131 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05152,322,910 - 152,324,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5152,322,916 - 152,324,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05156,008,864 - 156,010,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,842,984 - 152,844,543 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,853,022 - 152,854,582 (-)NCBI
Celera5144,738,707 - 144,740,266 (-)NCBICelera
Cytogenetic Map5q36NCBI
CD52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21200,550,892 - 200,553,897 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11199,648,667 - 199,654,402 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0125,578,073 - 25,581,442 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,647,260 - 26,649,876 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,647,260 - 26,649,876 (+)Ensemblpanpan1.1panPan2
CD52
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,699,427 - 73,701,046 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,699,425 - 73,701,046 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha270,276,094 - 70,277,713 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,262,399 - 74,264,018 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,262,397 - 74,264,018 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,087,368 - 71,088,987 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,093,052 - 72,094,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,096,828 - 73,098,447 (-)NCBIUU_Cfam_GSD_1.0
CD52
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl683,723,756 - 83,726,912 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1683,723,762 - 83,725,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CD52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120106,452,484 - 106,464,483 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20106,452,485 - 106,455,451 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660339,965,534 - 9,968,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in CD52
8 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.11-34.2(chr1:24381206-41401517)x3 copy number gain See cases [RCV000138891] Chr1:24381206..41401517 [GRCh38]
Chr1:24707696..41886350 [GRCh37]
Chr1:24580283..41658937 [NCBI36]
Chr1:1p36.11-34.2		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12		 likely benign
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1		 uncertain significance
GRCh37/hg19 1p36.11(chr1:26603699-26903828)x3 copy number gain not provided [RCV000847959] Chr1:26603699..26903828 [GRCh37]
Chr1:1p36.11		 uncertain significance
NC_000001.10:g.(?_25870180)_(26795632_?)del deletion Hypercholesterolemia, familial, 4 [RCV001385284] Chr1:25870180..26795632 [GRCh37]
Chr1:1p36.11		 pathogenic
GRCh37/hg19 1p36.11(chr1:26246213-27044118)x3 copy number gain not provided [RCV001829142] Chr1:26246213..27044118 [GRCh37]
Chr1:1p36.11		 uncertain significance
NC_000001.10:g.(?_25870190)_(27278871_?)dup duplication Retinitis pigmentosa 59 [RCV003122734] Chr1:25870190..27278871 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001803.3(CD52):c.176G>A (p.Cys59Tyr) single nucleotide variant not specified [RCV004177679] Chr1:26320292 [GRCh38]
Chr1:26646783 [GRCh37]
Chr1:1p36.11		 likely benign
NM_001803.3(CD52):c.148G>A (p.Val50Met) single nucleotide variant not specified [RCV004230340] Chr1:26320264 [GRCh38]
Chr1:26646755 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001803.3(CD52):c.49G>C (p.Val17Leu) single nucleotide variant not specified [RCV004096781] Chr1:26318066 [GRCh38]
Chr1:26644557 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001803.3(CD52):c.43G>C (p.Val15Leu) single nucleotide variant not specified [RCV004255025] Chr1:26318060 [GRCh38]
Chr1:26644551 [GRCh37]
Chr1:1p36.11		 uncertain significance
GRCh38/hg38 1p36.33-35.1(chr1:99125-34026935)x3 copy number gain Trisomy 12p [RCV003447845] Chr1:99125..34026935 [GRCh38]
Chr1:1p36.33-35.1		 pathogenic
NM_001803.3(CD52):c.123A>G (p.Ile41Met) single nucleotide variant CD52-related disorder [RCV003974556] Chr1:26320239 [GRCh38]
Chr1:26646730 [GRCh37]
Chr1:1p36.11		 benign
NM_001803.3(CD52):c.12C>T (p.Phe4=) single nucleotide variant CD52-related disorder [RCV003964532] Chr1:26318029 [GRCh38]
Chr1:26644520 [GRCh37]
Chr1:1p36.11		 likely benign
NM_001803.3(CD52):c.119A>G (p.Asn40Ser) single nucleotide variant CD52-related disorder [RCV003979679] Chr1:26320235 [GRCh38]
Chr1:26646726 [GRCh37]
Chr1:1p36.11		 benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:796
Count of miRNA genes:503
Interacting mature miRNAs:549
Transcripts:ENST00000374213, ENST00000470468, ENST00000492808
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597237305GWAS1333379_Hblood protein measurement QTL GWAS1333379 (human)3e-41blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)12632023926320240Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407110487GWAS759463_Heosinophil count QTL GWAS759463 (human)1e-12eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)12632023526320236Human
406963895GWAS612871_Hmonocyte percentage of leukocytes QTL GWAS612871 (human)7e-16monocyte percentage of leukocytesblood monocyte count to total leukocyte count ratio (CMO:0000374)12631946426319465Human
597283489GWAS1379563_Heosinophil count QTL GWAS1379563 (human)3e-09eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)12631946426319465Human
597054126GWAS1150200_Heosinophil count QTL GWAS1150200 (human)7e-13eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)12632023526320236Human
597237424GWAS1333498_Hlymphocyte:monocyte ratio QTL GWAS1333498 (human)6e-15leukocyte quantity (VT:0000217)12632023526320236Human
597057564GWAS1153638_Heosinophil count QTL GWAS1153638 (human)4e-15eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)12632023526320236Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597057176GWAS1153250_Heosinophil count QTL GWAS1153250 (human)8e-13eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)12632023526320236Human

Markers in Region
G62004  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37126,646,676 - 26,646,809UniSTSGRCh37
Build 36126,519,263 - 26,519,396RGDNCBI36
Celera125,042,996 - 25,043,129RGD
Cytogenetic Map1p36UniSTS
HuRef124,900,776 - 24,900,909UniSTS
RH70873  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37126,646,730 - 26,646,903UniSTSGRCh37
GRCh372240,618,666 - 240,619,805UniSTSGRCh37
Build 36126,519,317 - 26,519,490RGDNCBI36
Celera2234,313,225 - 234,314,364UniSTS
Celera125,043,050 - 25,043,223RGD
Cytogenetic Map1p36UniSTS
HuRef124,900,830 - 24,901,003UniSTS
GeneMap99-GB4 RH Map188.51UniSTS
NCBI RH Map1142.5UniSTS
D1S3354  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37126,646,802 - 26,646,908UniSTSGRCh37
Build 36126,519,389 - 26,519,495RGDNCBI36
Celera125,043,122 - 25,043,228RGD
Cytogenetic Map1p36UniSTS
HuRef124,900,902 - 24,901,008UniSTS
TNG Radiation Hybrid Map111132.0UniSTS
GeneMap99-GB4 RH Map188.61UniSTS
Whitehead-RH Map188.5UniSTS
NCBI RH Map1142.5UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2393 2781 2250 4884 1718 2242 5 620 1942 459 2236 7221 6451 35 3668 1 825 1703 1515 174 1

Sequence


Ensembl Acc Id: ENST00000374213   ⟹   ENSP00000363330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,317,958 - 26,320,523 (+)Ensembl
Ensembl Acc Id: ENST00000470468
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,317,958 - 26,320,324 (+)Ensembl
Ensembl Acc Id: ENST00000492808
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,317,958 - 26,318,994 (+)Ensembl
RefSeq Acc Id: NM_001803   ⟹   NP_001794
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,317,958 - 26,320,523 (+)NCBI
GRCh37126,644,411 - 26,647,014 (+)ENTREZGENE
Build 36126,516,998 - 26,519,601 (+)NCBI Archive
HuRef124,898,510 - 24,901,114 (+)ENTREZGENE
CHM1_1126,757,615 - 26,760,215 (+)NCBI
T2T-CHM13v2.0126,155,410 - 26,157,976 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001794   ⟸   NM_001803
- Peptide Label: precursor
- UniProtKB: P31358 (UniProtKB/Swiss-Prot),   Q5T138 (UniProtKB/Swiss-Prot),   Q9BW46 (UniProtKB/Swiss-Prot),   Q6IBD0 (UniProtKB/TrEMBL),   V9HWN9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000363330   ⟸   ENST00000374213

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P31358-F1-model_v2 AlphaFold P31358 1-61 view protein structure

Promoters
RGD ID:6854624
Promoter ID:EPDNEW_H477
Type:initiation region
Name:CD52_1
Description:CD52 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,317,958 - 26,318,018EPDNEW
RGD ID:6784878
Promoter ID:HG_KWN:1491
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   K562,   Lymphoblastoid
Transcripts:NM_001803,   OTTHUMT00000009705,   UC009VSG.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36126,516,819 - 26,517,319 (+)MPROMDB
RGD ID:6850682
Promoter ID:EP73135
Type:multiple initiation site
Name:HS_CDW52
Description:CDW52 antigen (CAMPATH-1 antigen).
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 36126,517,036 - 26,517,096EPD

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1804 AgrOrtholog
COSMIC CD52 COSMIC
Ensembl Genes ENSG00000169442 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000374213 ENTREZGENE
  ENST00000374213.3 UniProtKB/Swiss-Prot
GTEx ENSG00000169442 GTEx
HGNC ID HGNC:1804 ENTREZGENE
Human Proteome Map CD52 Human Proteome Map
InterPro CAMPATH-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:1043 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 1043 ENTREZGENE
OMIM 114280 OMIM
PANTHER CAMPATH-1 ANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15029 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CD52 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26350 PharmGKB
UniProt CD52_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q5T138 ENTREZGENE
  Q6IBD0 ENTREZGENE, UniProtKB/TrEMBL
  Q9BW46 ENTREZGENE
  Q9UJ81_HUMAN UniProtKB/TrEMBL
  V9HWN9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q5T138 UniProtKB/Swiss-Prot
  Q9BW46 UniProtKB/Swiss-Prot