OR4A17P (olfactory receptor family 4 subfamily A member 17 pseudogene) - Rat Genome Database

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Gene: OR4A17P (olfactory receptor family 4 subfamily A member 17 pseudogene) Homo sapiens
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Symbol: OR4A17P
Name: olfactory receptor family 4 subfamily A member 17 pseudogene
RGD ID: 1348174
HGNC Page HGNC:15154
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: OR4A22P
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,444,436 - 55,445,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,444,435 - 55,445,338 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,211,912 - 55,212,815 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,968,387 - 54,969,490 (+)NCBINCBI36Build 36hg18NCBI36
Celera1152,555,305 - 52,556,208 (+)NCBICelera
Cytogenetic Map11q11NCBI
HuRef1151,541,285 - 51,542,188 (+)NCBIHuRef
CHM1_11155,077,212 - 55,078,115 (+)NCBICHM1_1
T2T-CHM13v2.01155,382,758 - 55,383,661 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in OR4A17P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:193
Interacting mature miRNAs:204
Transcripts:ENST00000526032
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 1
Below cutoff 6 11 3 15 14 9 10 2 14 3 4 9

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000526032
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1155,444,435 - 55,445,338 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC OR4A17P COSMIC
Ensembl Genes ENSG00000255196 Ensembl, ENTREZGENE
GTEx ENSG00000255196 GTEx
HGNC ID HGNC:15154 ENTREZGENE
Human Proteome Map OR4A17P Human Proteome Map
NCBI Gene 390139 ENTREZGENE
PharmGKB PA32236 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR4A17P  olfactory receptor family 4 subfamily A member 17 pseudogene  OR4A17P  olfactory receptor, family 4, subfamily A, member 17 pseudogene  Symbol and/or name change 5135510 APPROVED