H4C10P (H4 clustered histone 10, pseudogene) - Rat Genome Database

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Gene: H4C10P (H4 clustered histone 10, pseudogene) Homo sapiens
Analyze
Symbol: H4C10P
Name: H4 clustered histone 10, pseudogene
RGD ID: 1348139
HGNC Page HGNC:4786
Description: Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the small histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: dJ97D16.3; H4FFP; HIST1H4PS1; histone cluster 1 H4 pseudogene 1; histone cluster 1, H4, pseudogene 1; pH4/f
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,807,167 - 27,807,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,807,075 - 27,807,339 (+)EnsemblGRCh38hg38GRCh38
GRCh37627,774,945 - 27,775,115 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,882,924 - 27,883,094 (+)NCBINCBI36Build 36hg18NCBI36
Celera629,380,983 - 29,381,153 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,583,231 - 27,583,401 (+)NCBIHuRef
CHM1_1627,777,102 - 27,777,272 (+)NCBICHM1_1
T2T-CHM13v2.0627,676,841 - 27,677,011 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9439656   PMID:36180920  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:135
Interacting mature miRNAs:137
Transcripts:ENST00000406085
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D6S105  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37627,771,274 - 27,771,402UniSTSGRCh37
GRCh37627,771,238 - 27,771,402UniSTSGRCh37
GRCh37627,731,727 - 27,731,874UniSTSGRCh37
GRCh37627,771,245 - 27,771,402UniSTSGRCh37
Build 36627,879,253 - 27,879,381RGDNCBI36
Celera629,377,322 - 29,377,440RGD
Celera629,337,772 - 29,337,929UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6p22.3-p22.2UniSTS
HuRef627,540,016 - 27,540,173UniSTS
HuRef627,579,537 - 27,579,688UniSTS
HuRef627,579,530 - 27,579,688UniSTS
HuRef627,579,566 - 27,579,688UniSTS
Marshfield Genetic Map644.41RGD
deCODE Assembly Map650.89UniSTS
Whitehead-YAC Contig Map6 UniSTS
D6S105  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6p22.1UniSTS
D6S105  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6p22.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 3 1
Low 161 155 99 49 231 47 257 36 152 93 371 188 7 12 120
Below cutoff 714 745 350 89 392 69 1066 409 839 105 497 429 26 207 713 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000406085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl627,807,075 - 27,807,339 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC H4C10P COSMIC
Ensembl Genes ENSG00000217862 Ensembl
GTEx ENSG00000217862 GTEx
HGNC ID HGNC:4786 ENTREZGENE
Human Proteome Map H4C10P Human Proteome Map
NCBI Gene 10337 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-30 H4C10P  H4 clustered histone 10, pseudogene  HIST1H4PS1  histone cluster 1 H4 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2016-08-23 HIST1H4PS1  histone cluster 1 H4 pseudogene 1    histone cluster 1, H4, pseudogene 1  Symbol and/or name change 5135510 APPROVED