PTP4A2P1 (PTP4A2 pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: PTP4A2P1 (PTP4A2 pseudogene 1) Homo sapiens
Analyze
Symbol: PTP4A2P1
Name: PTP4A2 pseudogene 1
RGD ID: 1347938
HGNC Page HGNC:9637
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: h-PRL-1; PTP4AP1
Related Functional Gene: PTP4A2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,533,120 - 42,534,226 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,533,532 - 42,534,009 (+)EnsemblGRCh38hg38GRCh38
GRCh371740,685,138 - 40,686,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,938,577 - 37,939,858 (+)NCBINCBI36Build 36hg18NCBI36
Celera1737,341,085 - 37,342,166 (+)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,450,097 - 36,451,178 (+)NCBIHuRef
CHM1_11740,920,993 - 40,922,074 (+)NCBICHM1_1
T2T-CHM13v2.01743,390,307 - 43,391,413 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8529999   PMID:8661118   PMID:8931711   PMID:15213447  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:56
Interacting mature miRNAs:58
Transcripts:ENST00000590314
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 7 6 6 3 6 17 11 25 2
Low 2032 1834 1460 555 1237 432 2848 1331 2165 265 1103 1333 134 1126 1882 3
Below cutoff 368 1023 233 57 571 25 1283 804 1443 122 280 241 32 75 826 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000590314
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1742,533,532 - 42,534,009 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PTP4A2P1 COSMIC
Ensembl Genes ENSG00000267185 Ensembl
GTEx ENSG00000267185 GTEx
HGNC ID HGNC:9637 ENTREZGENE
Human Proteome Map PTP4A2P1 Human Proteome Map
NCBI Gene 5767 ENTREZGENE
PharmGKB PA33980 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 PTP4A2P1  PTP4A2 pseudogene 1    protein tyrosine phosphatase type IVA, member 2 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 PTP4A2P1  protein tyrosine phosphatase type IVA, member 2 pseudogene 1  PTP4AP1  protein tyrosine phosphatase type IVA pseudogene 1  Symbol and/or name change 5135510 APPROVED