HSP90B2P (heat shock protein 90 beta family member 2, pseudogene) - Rat Genome Database

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Gene: HSP90B2P (heat shock protein 90 beta family member 2, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: HSP90B2P
Name: heat shock protein 90 beta family member 2, pseudogene
RGD ID: 1347885
HGNC Page HGNC:12099
Description: Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be active in mitochondrial inner membrane.
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: GRP94b; GRP94P1; heat shock 90kDa protein 1, beta pseudogene 2; heat shock protein 90kDa beta family member 2, pseudogene; HsGrp94b; HSP; HSPCP2; TRA1P1; TRAP1; tumor rejection antigen (gp96) 1 pseudogene 1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: HSP90B1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381599,257,525 - 99,260,276 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1599,257,632 - 99,260,015 (+)EnsemblGRCh38hg38GRCh38
GRCh371599,797,730 - 99,800,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361597,615,572 - 97,617,847 (+)NCBINCBI36Build 36hg18NCBI36
Celera1576,216,821 - 76,219,453 (+)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1575,927,290 - 75,930,041 (+)NCBIHuRef
CHM1_11599,639,070 - 99,641,821 (+)NCBICHM1_1
T2T-CHM13v2.01597,021,301 - 97,024,052 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
protein folding  (IBA,IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16269234   PMID:21873635   PMID:23383273   PMID:28533407   PMID:28675297   PMID:29507755   PMID:30021884   PMID:31536960   PMID:31586073   PMID:33961781   PMID:34349018   PMID:35007762  
PMID:35235311  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:190
Interacting mature miRNAs:197
Transcripts:ENST00000559111
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH67937  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371599,798,433 - 99,798,560UniSTSGRCh37
GRCh3712104,327,930 - 104,328,057UniSTSGRCh37
Build 3612102,852,060 - 102,852,187RGDNCBI36
Celera1576,217,405 - 76,217,532UniSTS
Celera12103,991,686 - 103,991,813RGD
Cytogenetic Map12q24.2-q24.3UniSTS
Cytogenetic Map15q26.3UniSTS
HuRef1575,927,993 - 75,928,120UniSTS
HuRef12101,387,652 - 101,387,779UniSTS
STS-H99801  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371599,799,106 - 99,799,340UniSTSGRCh37
GRCh3712104,335,463 - 104,336,451UniSTSGRCh37
Build 361597,616,629 - 97,616,863RGDNCBI36
Celera12103,999,235 - 104,000,221UniSTS
Celera1576,218,078 - 76,218,312RGD
Cytogenetic Map12q24.2-q24.3UniSTS
Cytogenetic Map15q26.3UniSTS
HuRef1575,928,666 - 75,928,900UniSTS
HuRef12101,395,201 - 101,396,187UniSTS
GeneMap99-GB4 RH Map15346.39UniSTS
TRA1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712104,336,867 - 104,337,062UniSTSGRCh37
GRCh371599,799,479 - 99,799,674UniSTSGRCh37
Build 3612102,860,997 - 102,861,192RGDNCBI36
Celera1576,218,451 - 76,218,646UniSTS
Celera12104,000,637 - 104,000,832UniSTS
Celera190,355,583 - 90,355,778RGD
HuRef1575,929,039 - 75,929,234UniSTS
HuRef12101,396,603 - 101,396,798UniSTS
HuRef190,227,537 - 90,227,732UniSTS
STS-X15187  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371599,800,106 - 99,800,315UniSTSGRCh37
GRCh3712104,341,110 - 104,341,531UniSTSGRCh37
Build 3612102,865,240 - 102,865,661RGDNCBI36
Celera12104,004,880 - 104,005,301RGD
Celera1576,219,078 - 76,219,287UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map12q24.2-q24.3UniSTS
HuRef1575,929,666 - 75,929,875UniSTS
HuRef12101,400,846 - 101,401,267UniSTS
GeneMap99-GB4 RH Map15352.9UniSTS
NCBI RH Map15733.7UniSTS
MARC_26038-26039:1032450563:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371599,798,061 - 99,798,210UniSTSGRCh37
GRCh3712104,326,128 - 104,326,694UniSTSGRCh37
Build 361597,615,584 - 97,615,733RGDNCBI36
Celera12103,989,884 - 103,990,450UniSTS
Celera1576,217,033 - 76,217,182RGD
HuRef1575,927,621 - 75,927,770UniSTS
HuRef12101,385,850 - 101,386,416UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1203 2419 2774 2245 4920 1721 2328 6 621 1786 461 2225 7088 6296 53 3724 1 832 1728 1598 174 1

Sequence


Ensembl Acc Id: ENST00000559111
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1599,257,632 - 99,260,015 (+)Ensembl
RefSeq Acc Id: NR_073383
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381599,257,525 - 99,260,276 (+)NCBI
HuRef1575,927,290 - 75,930,041 (+)NCBI
CHM1_11599,639,070 - 99,641,821 (+)NCBI
T2T-CHM13v2.01597,021,301 - 97,024,052 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAX38255 (Get FASTA)   NCBI Sequence Viewer  
  Q58FF3 (Get FASTA)   NCBI Sequence Viewer  

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q58FF3-F1-model_v2 AlphaFold Q58FF3 1-399 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12099 AgrOrtholog
COSMIC HSP90B2P COSMIC
Ensembl Genes ENSG00000259706 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000559111 ENTREZGENE
Gene3D-CATH 1.20.120.790 UniProtKB/Swiss-Prot
  3.30.230.80 UniProtKB/Swiss-Prot
  3.40.50.11260 UniProtKB/Swiss-Prot
GTEx ENSG00000259706 GTEx
HGNC ID HGNC:12099 ENTREZGENE
Human Proteome Map HSP90B2P Human Proteome Map
InterPro HSP90_C UniProtKB/Swiss-Prot
  Hsp90_fam UniProtKB/Swiss-Prot
  Ribosomal_S5_D2-typ_fold UniProtKB/Swiss-Prot
NCBI Gene 7190 ENTREZGENE
PANTHER ENDOPLASMIN-LIKE PROTEIN-RELATED UniProtKB/Swiss-Prot
  PTHR11528 UniProtKB/Swiss-Prot
Pfam HSP90 UniProtKB/Swiss-Prot
PharmGKB PA134913415 PharmGKB
PROSITE ER_TARGET UniProtKB/Swiss-Prot
Superfamily-SCOP SSF110942 UniProtKB/Swiss-Prot
  SSF54211 UniProtKB/Swiss-Prot
UniProt ENPLL_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-28 HSP90B2P  heat shock protein 90 beta family member 2, pseudogene    heat shock protein 90kDa beta family member 2, pseudogene  Symbol and/or name change 5135510 APPROVED
2016-04-01 HSP90B2P  heat shock protein 90kDa beta family member 2, pseudogene  HSPCP2  heat shock 90kDa protein 1, beta pseudogene 2  Data merged from RGD:1348479 737654 PROVISIONAL
2015-11-24 HSP90B2P  heat shock protein 90kDa beta family member 2, pseudogene    heat shock protein 90kDa beta (Grp94), member 2, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 HSP90B2P  heat shock protein 90kDa beta (Grp94), member 2, pseudogene  HSP90B2P  heat shock protein 90kDa beta (Grp94), member 2 (pseudogene)  Symbol and/or name change 5135510 APPROVED