ATP6V0CP1 (ATPase H+ transporting V0 subunit c pseudogene 1) - Rat Genome Database

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Gene: ATP6V0CP1 (ATPase H+ transporting V0 subunit c pseudogene 1) Homo sapiens
Analyze
Symbol: ATP6V0CP1
Name: ATPase H+ transporting V0 subunit c pseudogene 1
RGD ID: 1347369
HGNC Page HGNC:31323
Description: INTERACTS WITH resveratrol
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ATCD1
Related Functional Gene: ATP6V0C  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,856,967 - 4,857,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,856,757 - 4,857,374 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,760,262 - 4,760,694 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,706,203 - 4,706,856 (-)NCBINCBI36Build 36hg18NCBI36
Celera174,775,149 - 4,775,581 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,647,560 - 4,648,497 (-)NCBIHuRef
CHM1_1174,769,016 - 4,769,953 (-)NCBICHM1_1
T2T-CHM13v2.0174,747,157 - 4,747,589 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
resveratrol  (EXP)

References
Additional References at PubMed
PMID:31471894  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:442
Count of miRNA genes:330
Interacting mature miRNAs:342
Transcripts:ENST00000394174, ENST00000482495
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 71 40 22 6 148 5 271 6 125 15 94 64 1 12 148
Below cutoff 999 944 611 200 655 114 1930 675 1901 153 667 675 93 440 1217 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000482495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,856,757 - 4,857,374 (-)Ensembl
RefSeq Acc Id: XM_001715527
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36174,706,203 - 4,706,856 (-)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC ATP6V0CP1 COSMIC
Ensembl Genes ENSG00000230201 Ensembl
GTEx ENSG00000230201 GTEx
HGNC ID HGNC:31323 ENTREZGENE
Human Proteome Map ATP6V0CP1 Human Proteome Map
NCBI Gene 100132978 ENTREZGENE
PharmGKB PA134897567 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 ATP6V0CP1  ATPase H+ transporting V0 subunit c pseudogene 1    ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 ATP6V0CP1  ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 1  ATCD1  ATP synthase subunit C domain containing 1 pseudogene  Symbol and/or name change 5135510 APPROVED