OR7E2P (olfactory receptor family 7 subfamily E member 2 pseudogene) - Rat Genome Database

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Gene: OR7E2P (olfactory receptor family 7 subfamily E member 2 pseudogene) Homo sapiens
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Symbol: OR7E2P
Name: olfactory receptor family 7 subfamily E member 2 pseudogene
RGD ID: 1347286
HGNC Page HGNC:8402
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: hg94; OR11-6; OR7E143P; OR7E51P; OR7E52P; OR7F2P; OST245
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381186,856,931 - 86,857,954 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1186,857,059 - 86,857,947 (-)EnsemblGRCh38hg38GRCh38
GRCh371186,567,973 - 86,568,996 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361186,245,706 - 86,246,542 (-)NCBINCBI36Build 36hg18NCBI36
Celera1183,879,430 - 83,880,266 (-)NCBICelera
Cytogenetic Map11q14.2NCBI
HuRef1182,857,185 - 82,858,208 (-)NCBIHuRef
CHM1_11186,453,691 - 86,454,714 (-)NCBICHM1_1
T2T-CHM13v2.01186,797,708 - 86,798,731 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9787077   PMID:12213199  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:81
Interacting mature miRNAs:81
Transcripts:ENST00000533071
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 122 434 102 2 9 1 642 91 225 26 196 207 1 431 369
Below cutoff 1482 1432 874 190 290 85 2287 1430 1747 164 795 920 111 695 1649

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000533071
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1186,857,059 - 86,857,947 (-)Ensembl
RefSeq Acc Id: NR_045004
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381186,856,931 - 86,857,954 (-)NCBI
GRCh371186,567,973 - 86,568,996 (-)NCBI
HuRef1182,857,185 - 82,858,208 (-)NCBI
CHM1_11186,453,691 - 86,454,714 (-)NCBI
T2T-CHM13v2.01186,797,708 - 86,798,731 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC OR7E2P COSMIC
Ensembl Genes ENSG00000255203 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000533071 ENTREZGENE
GTEx ENSG00000255203 GTEx
HGNC ID HGNC:8402 ENTREZGENE
Human Proteome Map OR7E2P Human Proteome Map
NCBI Gene 8587 ENTREZGENE
PharmGKB PA32681 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR7E2P  olfactory receptor family 7 subfamily E member 2 pseudogene  OR7E2P  olfactory receptor, family 7, subfamily E, member 2 pseudogene  Symbol and/or name change 5135510 APPROVED