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Gene: TNIP3 (TNFAIP3 interacting protein 3) Homo sapiens

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Symbol:

TNIP3

Name:

TNFAIP3 interacting protein 3

RGD ID:

1346864

HGNC Page

HGNC:19315

Description:

Enables polyubiquitin modification-dependent protein binding activity. Involved in cellular response to lipopolysaccharide; negative regulation of canonical NF-kappaB signal transduction; and pattern recognition receptor signaling pathway. Predicted to be located in cytosol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

A20-binding inhibitor of NF-kappa-B activation 3; ABIN-3; ABIN-3 beta; FLJ21162; LIND; Listeria induced; listeria-induced gene protein; TNFAIP3-interacting protein 3; TNFAIP3-interacting protein 3 beta; TNIP3 beta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	121,131,408 - 121,227,483 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	121,131,408 - 121,227,466 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	122,052,563 - 122,148,638 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	122,272,017 - 122,304,926 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	122,410,171 - 122,443,081	NCBI
Celera	4	119,438,060 - 119,523,157 (-)	NCBI		Celera
Cytogenetic Map	4	q27	NCBI
HuRef	4	117,779,606 - 117,875,679 (-)	NCBI		HuRef
CHM1_1	4	122,029,103 - 122,125,192 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	124,435,731 - 124,531,810 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNIP3	Human	neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities		IAGP	RGD:156443278	8554872	ClinVar Annotator: match by term: NEURODEVELOPMENTAL DISORDER WITH HEARING LOSS, SEIZURES, AND BRAIN ABNORMALITIES	ClinVar	PMID:28492532
TNIP3	Human	Neurodevelopmental Disorders		IAGP	RGD:14698864	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNIP3	Human	1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene	multiple interactions	ISO	RGD:1618716	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
TNIP3	Human	1,2-dimethylhydrazine	decreases expression	ISO	RGD:1618716	6480464	1,2-Dimethylhydrazine results in decreased expression of TNIP3 mRNA	CTD	PMID:22206623
TNIP3	Human	17beta-estradiol	multiple interactions	ISO	RGD:1588732	6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of TNIP3 mRNA	CTD	PMID:32741896
TNIP3	Human	17beta-estradiol 3-benzoate	multiple interactions	ISO	RGD:1588732	6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of TNIP3 mRNA	CTD	PMID:32741896
TNIP3	Human	2,2',4,4',5,5'-hexachlorobiphenyl	multiple interactions	ISO	RGD:1618716	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
TNIP3	Human	2,2',5,5'-tetrachlorobiphenyl	multiple interactions	ISO	RGD:1618716	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
TNIP3	Human	2,4,4'-trichlorobiphenyl	multiple interactions	ISO	RGD:1618716	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
TNIP3	Human	2,4-dibromophenyl 2,4,5-tribromophenyl ether	affects expression	ISO	RGD:1618716	6480464	2,2',4,4',5-brominated diphenyl ether affects the expression of TNIP3 mRNA	CTD	PMID:38648751
TNIP3	Human	benzo[a]pyrene	increases expression	EXP		6480464	Benzo(a)pyrene results in increased expression of TNIP3 mRNA	CTD	PMID:20064835
TNIP3	Human	bisphenol A	affects expression	ISO	RGD:1588732	6480464	bisphenol A affects the expression of TNIP3 mRNA	CTD	PMID:25181051
TNIP3	Human	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of TNIP3 mRNA	CTD	PMID:38568856
TNIP3	Human	carbon nanotube	increases expression	ISO	RGD:1618716	6480464	Nanotubes, Carbon analog results in increased expression of TNIP3 mRNA; Nanotubes, Carbon results in increased more ...	CTD	PMID:25554681
TNIP3	Human	copper(II) chloride	increases expression	EXP		6480464	cupric chloride results in increased expression of TNIP3 mRNA	CTD	PMID:38568856
TNIP3	Human	diquat	decreases expression	ISO	RGD:1618716	6480464	Diquat results in decreased expression of TNIP3 mRNA	CTD	PMID:36851058
TNIP3	Human	ethylparaben	increases expression	EXP		6480464	ethyl-p-hydroxybenzoate results in increased expression of TNIP3 mRNA	CTD	PMID:37690743
TNIP3	Human	lipopolysaccharide	increases expression	ISO	RGD:1618716	6480464	Lipopolysaccharides results in increased expression of TNIP3 mRNA	CTD	PMID:25890327\|PMID:26582142
TNIP3	Human	lipopolysaccharide	increases expression	EXP		6480464	Lipopolysaccharides results in increased expression of TNIP3 mRNA	CTD	PMID:35811015
TNIP3	Human	lipopolysaccharide	multiple interactions	EXP		6480464	[S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of TNIP3 mRNA; [S-(1,2-dichlorovinyl)cysteine more ...	CTD	PMID:35811015
TNIP3	Human	malathion	increases expression	EXP		6480464	Malathion results in increased expression of TNIP3 mRNA	CTD	PMID:37047231
TNIP3	Human	O-methyleugenol	decreases expression	EXP		6480464	methyleugenol results in decreased expression of TNIP3 mRNA	CTD	PMID:32234424
TNIP3	Human	ozone	multiple interactions	ISO	RGD:1618716	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased more ...	CTD	PMID:27106289\|PMID:34911549
TNIP3	Human	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of TNIP3 mRNA	CTD	PMID:29067470
TNIP3	Human	paraquat	increases expression	ISO	RGD:1588732	6480464	Paraquat results in increased expression of TNIP3 mRNA	CTD	PMID:32680482
TNIP3	Human	PCB138	multiple interactions	ISO	RGD:1618716	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
TNIP3	Human	potassium dichromate	increases expression	ISO	RGD:1618716	6480464	Potassium Dichromate results in increased expression of TNIP3 mRNA	CTD	PMID:23608068
TNIP3	Human	protein kinase inhibitor	multiple interactions	EXP		6480464	Protein Kinase Inhibitors inhibits the reaction [gardiquimod results in increased expression of TNIP3 mRNA]	CTD	PMID:28003376
TNIP3	Human	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	EXP		6480464	[S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of TNIP3 mRNA; [S-(1,2-dichlorovinyl)cysteine more ...	CTD	PMID:35811015
TNIP3	Human	S-(1,2-dichlorovinyl)-L-cysteine	increases expression	EXP		6480464	S-(1,2-dichlorovinyl)cysteine results in increased expression of TNIP3 mRNA	CTD	PMID:35811015
TNIP3	Human	silicon dioxide	increases expression	EXP		6480464	Silicon Dioxide analog results in increased expression of TNIP3 mRNA	CTD	PMID:23806026
TNIP3	Human	sodium arsenite	increases expression	EXP		6480464	sodium arsenite results in increased expression of TNIP3 mRNA	CTD	PMID:34032870\|PMID:38568856
TNIP3	Human	temozolomide	decreases expression	EXP		6480464	Temozolomide results in decreased expression of TNIP3 mRNA	CTD	PMID:31758290
TNIP3	Human	testosterone	multiple interactions	ISO	RGD:1588732	6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of TNIP3 mRNA	CTD	PMID:32741896
TNIP3	Human	triphenyl phosphate	affects expression	EXP		6480464	triphenyl phosphate affects the expression of TNIP3 mRNA	CTD	PMID:37042841
TNIP3	Human	trovafloxacin	increases expression	ISO	RGD:1618716	6480464	trovafloxacin results in increased expression of TNIP3 mRNA	CTD	PMID:35537566
TNIP3	Human	zoledronic acid	increases expression	EXP		6480464	zoledronic acid results in increased expression of TNIP3 mRNA	CTD	PMID:24714768

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNIP3	Human	cellular response to lipopolysaccharide	involved_in	IDA		150520179	PMID:17088249	UniProt	PMID:17088249
TNIP3	Human	cellular response to lipopolysaccharide	involved_in	IBA	MGI:2386643\|PANTHER:PTN001590884\|UniProtKB:Q96KP6	150520179		GO_Central	GO_REF:0000033
TNIP3	Human	inflammatory response	involved_in	IEA	UniProtKB-KW:KW-0395	150520179		UniProt	GO_REF:0000043
TNIP3	Human	MyD88-independent toll-like receptor signaling pathway	involved_in	IDA		150520179	PMID:17088249	UniProt	PMID:17088249
TNIP3	Human	negative regulation of canonical NF-kappaB signal transduction	involved_in	IDA		150520179	PMID:17088249	UniProt	PMID:17088249
TNIP3	Human	regulation of canonical NF-kappaB signal transduction	involved_in	IEA	ARBA:ARBA00026688	150520179		UniProt	GO_REF:0000117
TNIP3	Human	regulation of transcription by RNA polymerase II	involved_in	IBA	MGI:1926194\|PANTHER:PTN002070829\|SGD:S000002703\|UniProtKB:Q8NFZ5	150520179		GO_Central	GO_REF:0000033
TNIP3	Human	toll-like receptor 4 signaling pathway	involved_in	IDA		150520179	PMID:17088249	UniProt	PMID:17088249

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNIP3	Human	cytoplasm	located_in	IEA	ARBA:ARBA00026971	150520179		UniProt	GO_REF:0000117
TNIP3	Human	cytosol	located_in	TAS		150520179		Reactome	Reactome:R-HSA-5690845

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TNIP3	Human	polyubiquitin modification-dependent protein binding	enables	IDA		150520179	PMID:18212736	UniProt	PMID:18212736
TNIP3	Human	protein binding	enables	IPI	UniProtKB:A0A6Q8PF08\|UniProtKB:G5E9A7\|UniProtKB:P02489\|UniProtKB:P02545\|UniProtKB:P35240\|UniProtKB:P42858\|UniProtKB:Q7Z699\|UniProtKB:Q86V38\|UniProtKB:Q92876	150520179	PMID:32814053	IntAct	PMID:32814053
TNIP3	Human	protein binding	enables	IPI	UniProtKB:A8MQ03\|UniProtKB:O00505\|UniProtKB:P0DPK4\|UniProtKB:P43356\|UniProtKB:P48745\|UniProtKB:Q15025\|UniProtKB:Q15038\|UniProtKB:Q3B820\|UniProtKB:Q4G0R1\|UniProtKB:Q5JR59-3\|UniProtKB:Q86VP1\|UniProtKB:Q8N8B7-2\|UniProtKB:Q96HA8\|UniProtKB:Q99732\|UniProtKB:Q9BRK4\|UniProtKB:Q9BZR9\|UniProtKB:Q9NRY6	150520179	PMID:32296183	IntAct	PMID:32296183
TNIP3	Human	protein binding	enables	IPI	UniProtKB:P21580\|UniProtKB:P60410\|UniProtKB:Q15025\|UniProtKB:Q15038\|UniProtKB:Q6A162\|UniProtKB:Q7Z3S9\|UniProtKB:Q86VP1\|UniProtKB:Q96BR9\|UniProtKB:Q9BRK4	150520179	PMID:25416956	IntAct	PMID:25416956
TNIP3	Human	protein binding	enables	IPI	UniProtKB:Q86VP1	150520179	PMID:31515488	IntAct	PMID:31515488

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:11345586	PMID:12477932	PMID:14702039	PMID:14743216	PMID:15342556	PMID:17088249	PMID:17485448	PMID:18081698	PMID:18212736	PMID:19464428	PMID:19617629	PMID:19913121
PMID:20379614	PMID:20628086	PMID:21873635	PMID:22093807	PMID:23383108	PMID:23468962	PMID:25416956	PMID:28005267	PMID:29987050	PMID:30021884	PMID:31307045	PMID:31391242
PMID:31515488	PMID:32268115	PMID:32296183	PMID:32599618	PMID:32814053	PMID:34133792

TNIP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	121,131,408 - 121,227,483 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	121,131,408 - 121,227,466 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	122,052,563 - 122,148,638 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	122,272,017 - 122,304,926 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	122,410,171 - 122,443,081	NCBI
Celera	4	119,438,060 - 119,523,157 (-)	NCBI		Celera
Cytogenetic Map	4	q27	NCBI
HuRef	4	117,779,606 - 117,875,679 (-)	NCBI		HuRef
CHM1_1	4	122,029,103 - 122,125,192 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	124,435,731 - 124,531,810 (-)	NCBI		T2T-CHM13v2.0

Tnip3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	65,567,382 - 65,611,024 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39	6	65,502,319 - 65,554,145 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	65,502,297 - 65,611,024 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	65,590,398 - 65,634,040 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	65,525,313 - 65,634,040 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	65,540,392 - 65,584,034 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	65,520,173 - 65,563,618 (+)	NCBI		MGSCv36	mm8
Celera	6	67,716,507 - 67,760,116 (+)	NCBI		Celera
Cytogenetic Map	6	C1	NCBI
cM Map	6	30.26	NCBI

Tnip3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	96,197,019 - 96,237,357 (+)	NCBI		GRCr8
mRatBN7.2	4	94,867,258 - 94,908,780 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	94,811,097 - 94,907,605 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	4	96,386,207 - 96,490,517 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	96,449,351 - 96,492,871 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	161,172,197 - 161,277,545 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	95,130,822 - 95,170,426 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	89,547,296 - 89,643,845 (+)	NCBI		Celera
Cytogenetic Map	4	q31	NCBI

Tnip3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	19,479,638 - 19,511,758 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955428	19,479,633 - 19,511,738 (+)	NCBI	ChiLan1.0	ChiLan1.0

TNIP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	118,923,914 - 119,008,116 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	119,208,280 - 119,292,441 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	113,343,082 - 113,428,022 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	124,481,710 - 124,577,599 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	124,481,721 - 124,577,599 (-)	Ensembl	panpan1.1		panPan2

TNIP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	18,857,719 - 18,960,760 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	18,853,168 - 18,960,760 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	19,080,344 - 19,183,678 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	18,983,923 - 19,087,318 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	18,979,685 - 19,087,318 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	18,943,691 - 19,046,633 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	19,214,924 - 19,317,879 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	19,693,807 - 19,796,756 (+)	NCBI		UU_Cfam_GSD_1.0

Tnip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	66,410,411 - 66,441,702 (+)	NCBI		HiC_Itri_2

TNIP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	102,892,366 - 102,991,848 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	102,892,427 - 102,990,902 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	110,275,634 - 110,377,144 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TNIP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	68,416,674 - 68,519,097 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	68,422,328 - 68,454,143 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	47,385,284 - 47,482,964 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnip3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624777	1,124,204 - 1,158,324 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624777	1,124,389 - 1,222,450 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in TNIP3
6 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3	copy number gain	See cases [RCV000051785]	Chr4:118065569..190042639 [GRCh38] Chr4:118986724..190828225 [GRCh37] Chr4:119206172..191200788 [NCBI36] Chr4:4q26-35.2	pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]\|See cases [RCV000051775]	Chr4:92913386..165299707 [GRCh38] Chr4:93834537..166220859 [GRCh37] Chr4:94053560..166440309 [NCBI36] Chr4:4q22.2-32.3	pathogenic
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3	copy number gain	See cases [RCV000051776]	Chr4:96092893..136410207 [GRCh38] Chr4:97014044..137331362 [GRCh37] Chr4:97233067..137550812 [NCBI36] Chr4:4q22.3-28.3	pathogenic
GRCh38/hg38 4q26-31.21(chr4:116630862-145429900)x1	copy number loss	See cases [RCV000053321]	Chr4:116630862..145429900 [GRCh38] Chr4:117552018..146351052 [GRCh37] Chr4:117771466..146570502 [NCBI36] Chr4:4q26-31.21	pathogenic
NM_001128843.2(TNIP3):c.189+1840G>A	single nucleotide variant	Lung cancer [RCV000094019]	Chr4:121180836 [GRCh38] Chr4:122101991 [GRCh37] Chr4:4q27	uncertain significance
GRCh38/hg38 4q27(chr4:121164018-122098913)x1	copy number loss	See cases [RCV000137335]	Chr4:121164018..122098913 [GRCh38] Chr4:122085173..123020068 [GRCh37] Chr4:122304623..123239518 [NCBI36] Chr4:4q27	uncertain significance
GRCh38/hg38 4q26-28.3(chr4:117351881-133565667)x1	copy number loss	See cases [RCV000143207]	Chr4:117351881..133565667 [GRCh38] Chr4:118273037..134486822 [GRCh37] Chr4:118492485..134706272 [NCBI36] Chr4:4q26-28.3	pathogenic
GRCh37/hg19 4q26-35.2(chr4:119437495-190904301)x3	copy number gain	See cases [RCV000240392]	Chr4:119437495..190904301 [GRCh37] Chr4:4q26-35.2	pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3	copy number gain	See cases [RCV000446653]	Chr4:12440..190904441 [GRCh37] Chr4:4p16.3-q35.2	pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)	copy number gain	See cases [RCV000510453]	Chr4:68346..190957473 [GRCh37] Chr4:4p16.3-q35.2	pathogenic
GRCh37/hg19 4q25-35.2(chr4:109199664-189752726)x3	copy number gain	See cases [RCV000511945]	Chr4:109199664..189752726 [GRCh37] Chr4:4q25-35.2	pathogenic
GRCh37/hg19 4q22.1-35.2(chr4:93071152-190957473)x3	copy number gain	See cases [RCV000510970]	Chr4:93071152..190957473 [GRCh37] Chr4:4q22.1-35.2	pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3	copy number gain	See cases [RCV000512241]	Chr4:68346..190957473 [GRCh37] Chr4:4p16.3-q35.2	pathogenic
GRCh37/hg19 4q26-28.2(chr4:116307857-129302960)x1	copy number loss	not provided [RCV000682448]	Chr4:116307857..129302960 [GRCh37] Chr4:4q26-28.2	pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3	copy number gain	not provided [RCV000743155]	Chr4:49450..190915650 [GRCh37] Chr4:4p16.3-q35.2	pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3	copy number gain	not provided [RCV000743156]	Chr4:49450..190963766 [GRCh37] Chr4:4p16.3-q35.2	pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3	copy number gain	not provided [RCV000743147]	Chr4:11525..191028879 [GRCh37] Chr4:4p16.3-q35.2	pathogenic
Single allele	deletion	Neurodevelopmental disorder [RCV000787448]	Chr4:116624547..126168646 [GRCh37] Chr4:4q26-28.1	likely pathogenic
GRCh37/hg19 4q27(chr4:121183810-122428870)x3	copy number gain	not provided [RCV001259311]	Chr4:121183810..122428870 [GRCh37] Chr4:4q27	uncertain significance
GRCh37/hg19 4q26-28.2(chr4:116833638-130232122)	copy number loss	Atypical behavior [RCV001352657]	Chr4:116833638..130232122 [GRCh37] Chr4:4q26-28.2	pathogenic
GRCh37/hg19 4q26-28.3(chr4:114872547-138005267)x1	copy number loss	not provided [RCV001795851]	Chr4:114872547..138005267 [GRCh37] Chr4:4q26-28.3	pathogenic
GRCh37/hg19 4q24-31.21(chr4:104715235-145252595)	copy number gain	not specified [RCV002053446]	Chr4:104715235..145252595 [GRCh37] Chr4:4q24-31.21	pathogenic
GRCh37/hg19 4q26-28.2(chr4:116888785-129649979)	copy number loss	not specified [RCV002053451]	Chr4:116888785..129649979 [GRCh37] Chr4:4q26-28.2	pathogenic
GRCh37/hg19 4q12-31.21(chr4:52866944-143582507)x3	copy number gain	not provided [RCV001827738]	Chr4:52866944..143582507 [GRCh37] Chr4:4q12-31.21	pathogenic
NC_000004.11:g.(?_121616266)_(124323706_?)dup	duplication	Microcephaly-intellectual disability-sensorineural hearing loss-epilepsy-abnormal muscle tone syndrome [RCV003113657]	Chr4:121616266..124323706 [GRCh37] Chr4:4q27-28.1	uncertain significance
NM_001128843.2(TNIP3):c.53C>T (p.Ser18Phe)	single nucleotide variant	not specified [RCV004188684]	Chr4:121216430 [GRCh38] Chr4:122137585 [GRCh37] Chr4:4q27	uncertain significance
NM_024873.6(TNIP3):c.753G>A (p.Met251Ile)	single nucleotide variant	not specified [RCV004254466]	Chr4:121142759 [GRCh38] Chr4:122063914 [GRCh37] Chr4:4q27	uncertain significance
GRCh37/hg19 4q26-32.3(chr4:117518683-168174703)x3	copy number gain	not provided [RCV003484198]	Chr4:117518683..168174703 [GRCh37] Chr4:4q26-32.3	pathogenic
GRCh37/hg19 4q24-35.2(chr4:101203509-190957473)x3	copy number gain	not specified [RCV003986496]	Chr4:101203509..190957473 [GRCh37] Chr4:4q24-35.2	pathogenic
GRCh37/hg19 4p12-q35.2(chr4:45455621-191003541)x3	copy number gain	not provided [RCV003885507]	Chr4:45455621..191003541 [GRCh37] Chr4:4p12-q35.2	pathogenic
NC_000004.11:g.(?_121616266)_(124323706_?)del	deletion	not provided [RCV004580860]	Chr4:121616266..124323706 [GRCh37] Chr4:4q27-28.1	uncertain significance
NM_024873.6(TNIP3):c.467A>T (p.Glu156Val)	single nucleotide variant	not specified [RCV004882918]	Chr4:121154576 [GRCh38] Chr4:122075731 [GRCh37] Chr4:4q27	uncertain significance
NM_024873.6(TNIP3):c.464A>C (p.Tyr155Ser)	single nucleotide variant	not specified [RCV004882919]	Chr4:121154579 [GRCh38] Chr4:122075734 [GRCh37] Chr4:4q27	uncertain significance

Predicted Target Of

	Summary Value
Count of predictions:	1769
Count of miRNA genes:	633
Interacting mature miRNAs:	713
Transcripts:	ENST00000057513, ENST00000454328, ENST00000506753, ENST00000507879, ENST00000509841, ENST00000511909, ENST00000515036, ENST00000515605
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
597076438	GWAS1172512_H	lobe attachment QTL GWAS1172512 (human)		0.000002	lobe attachment	ear measurement (CMO:0002667)	4	121212944	121212945	Human
1643256	BW127_H	Body Weight QTL 127 (human)	1.31	0.007	Body weight	body mass index	4	106319694	132319694	Human
406959283	GWAS608259_H	breast carcinoma QTL GWAS608259 (human)		0.0000003	mammary gland integrity trait (VT:0010552)		4	121205653	121205654	Human
406960789	GWAS609765_H	breast carcinoma QTL GWAS609765 (human)		0.000002	mammary gland integrity trait (VT:0010552)		4	121189820	121189821	Human
406960788	GWAS609764_H	breast carcinoma QTL GWAS609764 (human)		0.000002	mammary gland integrity trait (VT:0010552)		4	121205653	121205654	Human
597054223	GWAS1150297_H	multiple sclerosis QTL GWAS1150297 (human)		1e-10	multiple sclerosis		4	121198294	121198295	Human
406960797	GWAS609773_H	breast carcinoma QTL GWAS609773 (human)		0.000002	mammary gland integrity trait (VT:0010552)		4	121222509	121222510	Human

SHGC-106299

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	4	122,105,325 - 122,105,612	UniSTS	GRCh37
Build 36	4	122,324,775 - 122,325,062	RGD	NCBI36
Celera	4	119,490,815 - 119,491,102	RGD
Cytogenetic Map	4	q27	UniSTS
HuRef	4	117,832,362 - 117,832,649	UniSTS
TNG Radiation Hybrid Map	4	76065.0	UniSTS

SHGC-67750

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	4	122,071,059 - 122,071,206	UniSTS	GRCh37
Build 36	4	122,290,509 - 122,290,656	RGD	NCBI36
Celera	4	119,456,547 - 119,456,694	RGD
Cytogenetic Map	4	q27	UniSTS
HuRef	4	117,798,094 - 117,798,241	UniSTS
GeneMap99-GB4 RH Map	4	557.24	UniSTS

D4S2416

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	4	122,124,295 - 122,124,494	UniSTS	GRCh37
Build 36	4	122,343,745 - 122,343,944	RGD	NCBI36
Celera	4	119,509,785 - 119,509,988	RGD
Cytogenetic Map	4	q27	UniSTS
HuRef	4	117,851,333 - 117,851,536	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system
1030	1779	1432	1374	3118	1321	1900	464	1689	321	1273	4975	4795	35	2695	641	1434	1362	154


RefSeq Transcripts	NM_001128843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001244764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_024873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011532256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011532257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017008619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017008620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017008621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017008622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017008623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017008624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017008625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047416181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047416182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054350851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054350852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054350853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054350854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054350855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054350856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC108027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF277289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ320534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK024815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK290409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK301058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK303192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP335455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CD367219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DC389224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF585496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU126609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000057513 ⟹ ENSP00000057513

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	121,131,408 - 121,164,321 (-)	Ensembl

Ensembl Acc Id:

ENST00000506753

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	121,154,238 - 121,164,321 (-)	Ensembl

Ensembl Acc Id:

ENST00000507879 ⟹ ENSP00000427106

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	121,132,040 - 121,216,627 (-)	Ensembl

Ensembl Acc Id:

ENST00000509841 ⟹ ENSP00000426613

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	121,132,283 - 121,227,466 (-)	Ensembl

Ensembl Acc Id:

ENST00000511909

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	121,132,392 - 121,150,115 (-)	Ensembl

Ensembl Acc Id:

ENST00000515036 ⟹ ENSP00000424284

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	121,137,449 - 121,141,899 (-)	Ensembl

Ensembl Acc Id:

ENST00000515605

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	121,132,537 - 121,157,283 (-)	Ensembl

RefSeq Acc Id:

NM_001128843 ⟹ NP_001122315

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,131,408 - 121,216,627 (-)	NCBI
GRCh37	4	122,052,563 - 122,148,624 (-)	NCBI
Celera	4	119,438,060 - 119,523,157 (-)	RGD
HuRef	4	117,779,606 - 117,875,679 (-)	NCBI
CHM1_1	4	122,029,103 - 122,114,355 (-)	NCBI
T2T-CHM13v2.0	4	124,435,731 - 124,520,953 (-)	NCBI

Sequence:

show sequence

GAGAATAAAAACATGGCTTTTGATGAAAAATGCATTTAACAGATTCCATGTGGATGGCTCATGAACAAAAATGAGAAACACGACGATAAACTGGTAATGTTCACCAATCAATCTGAAGATTCTGAAAG
ATGTGAAAGCATGGAGCTGGACAAAAAAATCCAGGATCTGATTGAGAGAAATGCGTCTCCTCATCCAAAACGGTTCACCCCAGAGGCCATGCCAACTCACAGAAATCTATGTTCTCTGAAGACTCCAG
GAAAAACAGCTTCCATGGCACATTTTGTACAGGGCACATCTAGAATGATTGCCGCAGAAAGTTCTACGGAGCATAAAGAGTGTGCTGAACCATCAACAAGAAAGAACTTGATGAATTCTCTTGAACAA
AAGATAAGGTGTTTGGAAAAACAAAGAAAAGAGCTCCTGGAAGTTAACCAGCAATGGGATCAGCAATTTAGAAGTATGAAAGAGTTATATGAAAGAAAGGTAGCAGAGCTGAAGACGAAACTGGACGC
CGCGGAAAGATTCCTCAGCACGCGGGAGAAGGATCCGCATCAGAGGCAGAGAAAGGACGACAGGCAGAGAGAGGACGACAGGCAGCGCGACCTGACCCGGGACCGGCTGCAGCGGGAGGAGAAGGAAA
AGGAACGCCTAAATGAAGAATTACATGAATTGAAAGAAGAGAATAAACTTTTAAAGGGAAAAAATACTCTTGCGAACAAGGAAAAGGAACATTACGAATGTGAAATAAAACGCCTCAATAAGGCTCTT
CAGGATGCCTTGAATATCAAGTGTTCATTTTCCGAGGACTGTTTGAGGAAGTCTCGAGTGGAATTCTGCCATGAGGAGATGAGAACAGAAATGGAAGTTCTGAAGCAGCAGGTGCAAATATACGAAGA
AGACTTCAAAAAGGAACGATCGGATCGAGAGAGACTTAATCAAGAGAAAGAGGAGCTACAGCAAATTAATGAAACTTCCCAATCCCAGTTGAACAGGCTGAATTCCCAGATAAAAGCTTGTCAGATGG
AGAAAGAAAAACTAGAAAAGCAATTAAAACAGATGTATTGCCCACCCTGTAACTGCGGCTTGGTTTTCCACCTGCAAGATCCATGGGTACCAACAGGCCCTGGAGCTGTGCAGAAGCAACGGGAGCAC
CCAGTTTATCCTCAGTAAAGAAAGTCCATCCGTAGAAGTACACACTAACAGAGAGAGACAACAGGCAACGAGGGAGCGTGGCTGAGGACCCTCTTCTTTGTTTATACTGAGGCTTGTTTCTGCCACAA
AGGCACATCATCTACCCTGTTATTTGTGCCTGGTCATGTTTTCCTTTGGTATGAATACAGGAAAAGGCTTCTGACAGCTAAGATCCTGATCAAATTGGAGGAGCCAGTTATTATACAACCAAATACAA
CTTCCAGTTTCCTTGAAATGAGACTTGGCAGATGGATGATGCACGACTCCCTGAAAATCTCTTCAGCATATTGCTGTTGGATGCACAAAAATGATTCTATGATTTAGGCAACTCAGTGTTTGCTGCAG
GGATATTGTATGTTGATTTAAAGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCTGGGGTAAAAATTTCTGCAGTTGTAAACGTTTAACATTGCTCCCATTCTTCTTCCA
CAGGGCCTTAGTTCTTTAGCTATTTGACTACATATTGTTGACCTCAGTGATCCTAAACGTAGAATTGAAGAGGTGTATATACCTCATTAAATTAAATAAGTGGTTCAATCTGAATAAGATGGTTAATT
GGAAGCTATTCCTTAGACAGATCATTTCTTTAAGATGATGAGAAATTGTGCGCCTGCATCACAAGACTTGATTATGAAAGATAAAGTCTTGGGCTGGGTGCAGTGGCTCATGCCTATAATCCCAGCAC
TTTGGGAGGCTGAGGCAGGTGGATTGCTTTGAGGCCAGGAGTTCTAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTATAAATACAAAAATTAGCCAGGCTCGTGGCACACACCTATAAAC
CCAGCTACTCAGGAGGCTTGAGGCGGGAGGATCACTTGAGCCCAGGGAGGCAGAGGTTGCTGTAAGTTGAGATCGCCACTGCACTCCAGCCTGGGAAATAGAGTGAGCAAGACTCAGTGCCCCCTACC
CACCCACTCCACACCACCAAAAAAAAAAAAAAAAAAAAAAGGAAGACAAAGTCCTGATGGGATGATGATGGCTATATGGCTATGCTGTGTCCATATATACTTACAGAAATATTTCAGACATATGGATT
TATAGTTAAATCTGTGTTTTTCCTTCCCTTGGATTTGATTAATTTTAATGAAAAACTTAATTCTGACTTCTCAAGCCAATTAAAATGAAAATGGAATTTATTGAAA

hide sequence

RefSeq Acc Id:

NM_001244764 ⟹ NP_001231693

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,131,408 - 121,227,483 (-)	NCBI
GRCh37	4	122,052,563 - 122,148,624 (-)	NCBI
HuRef	4	117,779,606 - 117,875,679 (-)	NCBI
CHM1_1	4	122,029,103 - 122,125,192 (-)	NCBI
T2T-CHM13v2.0	4	124,435,731 - 124,531,810 (-)	NCBI

Sequence:

show sequence

AGTTACTGTTTGATTCAAAGAGTCTTAAAGACAGGTCTCCGTATTAGACCTTGTAATACGCTTACCTAGATCTGAGAAGGACTTTCAGGATAGAACATGATTCCATGTGGATGGCTCATGAACAAAAA
TGAGAAACACGACGATAAACTGGTAATGTTCACCAATCAATCTGAAGATTCTGAAAGATGTGAAAGCATGGAGCTGGACAAAAAAATCCAGGATCTGATTGAGAGAAATGCGTCTCCTCATCCAAAAC
GGTTCACCCCAGAGGCCATGCCAACTCACAGAAATCTATGTTCTCTGAAGACTCCAGGAAAAACAGCTTCCATGGCACATTTTGTACAGGGCACATCTAGAATGATTGCCGCAGAAAGTTCTACGGAG
CATAAAGAGTGTGCTGAACCATCAACAAGAAAGAACTTGATGAATTCTCTTGAACAAAAGATAAGGTGTTTGGAAAAACAAAGAAAAGAGCTCCTGGAAGTTAACCAGCAATGGGATCAGCAATTTAG
AAGTATGAAAGAGTTATATGAAAGAAAGGTAGCAGAGCTGAAGACGAAACTGGACGCCGCGGAAAGATTCCTCAGCACGCGGGAGAAGGATCCGCATCAGAGGCAGAGAAAGGACGACAGGCAGAGAG
AGGACGACAGGCAGCGCGACCTGACCCGGGACCGGCTGCAGCGGGAGGAGAAGGAAAAGGAACGCCTAAATGAAGAATTACATGAATTGAAAGAAGAGAATAAACTTTTAAAGGGAAAAAATACTCTT
GCGAACAAGGAAAAGGAACATTACGAATGTGAAATAAAACGCCTCAATAAGGCTCTTCAGGATGCCTTGAATATCAAGTGTTCATTTTCCGAGGACTGTTTGAGGAAGTCTCGAGTGGAATTCTGCCA
TGAGGAGATGAGAACAGAAATGGAAGTTCTGAAGCAGCAGGTGCAAATATACGAAGAAGACTTCAAAAAGGAACGATCGGATCGAGAGAGACTTAATCAAGAGAAAGAGGAGCTACAGCAAATTAATG
AAACTTCCCAATCCCAGTTGAACAGGCTGAATTCCCAGATAAAAGCTTGTCAGATGGAGAAAGAAAAACTAGAAAAGCAATTAAAACAGATGTATTGCCCACCCTGTAACTGCGGCTTGGTTTTCCAC
CTGCAAGATCCATGGGTACCAACAGGCCCTGGAGCTGTGCAGAAGCAACGGGAGCACCCAGTTTATCCTCAGTAAAGAAAGTCCATCCGTAGAAGTACACACTAACAGAGAGAGACAACAGGCAACGA
GGGAGCGTGGCTGAGGACCCTCTTCTTTGTTTATACTGAGGCTTGTTTCTGCCACAAAGGCACATCATCTACCCTGTTATTTGTGCCTGGTCATGTTTTCCTTTGGTATGAATACAGGAAAAGGCTTC
TGACAGCTAAGATCCTGATCAAATTGGAGGAGCCAGTTATTATACAACCAAATACAACTTCCAGTTTCCTTGAAATGAGACTTGGCAGATGGATGATGCACGACTCCCTGAAAATCTCTTCAGCATAT
TGCTGTTGGATGCACAAAAATGATTCTATGATTTAGGCAACTCAGTGTTTGCTGCAGGGATATTGTATGTTGATTTAAAGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTC
CTGGGGTAAAAATTTCTGCAGTTGTAAACGTTTAACATTGCTCCCATTCTTCTTCCACAGGGCCTTAGTTCTTTAGCTATTTGACTACATATTGTTGACCTCAGTGATCCTAAACGTAGAATTGAAGA
GGTGTATATACCTCATTAAATTAAATAAGTGGTTCAATCTGAATAAGATGGTTAATTGGAAGCTATTCCTTAGACAGATCATTTCTTTAAGATGATGAGAAATTGTGCGCCTGCATCACAAGACTTGA
TTATGAAAGATAAAGTCTTGGGCTGGGTGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATTGCTTTGAGGCCAGGAGTTCTAGACCAGCCTGGCCAGCATGGTGAAA
CCCCATCTCTACTATAAATACAAAAATTAGCCAGGCTCGTGGCACACACCTATAAACCCAGCTACTCAGGAGGCTTGAGGCGGGAGGATCACTTGAGCCCAGGGAGGCAGAGGTTGCTGTAAGTTGAG
ATCGCCACTGCACTCCAGCCTGGGAAATAGAGTGAGCAAGACTCAGTGCCCCCTACCCACCCACTCCACACCACCAAAAAAAAAAAAAAAAAAAAAAGGAAGACAAAGTCCTGATGGGATGATGATGG
CTATATGGCTATGCTGTGTCCATATATACTTACAGAAATATTTCAGACATATGGATTTATAGTTAAATCTGTGTTTTTCCTTCCCTTGGATTTGATTAATTTTAATGAAAAACTTAATTCTGACTTCT
CAAGCCAATTAAAATGAAAATGGAATTTATTGAAA

hide sequence

RefSeq Acc Id:

NM_024873 ⟹ NP_079149

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,131,408 - 121,164,321 (-)	NCBI
GRCh37	4	122,052,563 - 122,148,624 (-)	NCBI
Build 36	4	122,272,017 - 122,304,926 (-)	NCBI Archive
Celera	4	119,438,060 - 119,523,157 (-)	RGD
HuRef	4	117,779,606 - 117,875,679 (-)	NCBI
CHM1_1	4	122,029,103 - 122,062,050 (-)	NCBI
T2T-CHM13v2.0	4	124,435,731 - 124,468,644 (-)	NCBI

Sequence:

show sequence

ATTCTGTGTAATTCCTATCCACAGTCACTTCTGTTCATTTTTAATGAAAACCTATTGCTGTTAT
TTTCTATTATGAGTTAACGGTGATGTGTGTTTTTTAAATTTTGTATACTTGCTCTCACCCTAAAATATACCTTAAGAGACTTTTCCCCTGTTTTTCTTTCTGCTTTCCAAGACTCCAGGAAAAACAGC
TTCCATGGCACATTTTGTACAGGGCACATCTAGAATGATTGCCGCAGAAAGTTCTACGGAGCATAAAGAGTGTGCTGAACCATCAACAAGAAAGAACTTGATGAATTCTCTTGAACAAAAGATAAGGT
GTTTGGAAAAACAAAGAAAAGAGCTCCTGGAAGTTAACCAGCAATGGGATCAGCAATTTAGAAGTATGAAAGAGTTATATGAAAGAAAGGTAGCAGAGCTGAAGACGAAACTGGACGCCGCGGAAAGA
TTCCTCAGCACGCGGGAGAAGGATCCGCATCAGAGGCAGAGAAAGGACGACAGGCAGAGAGAGGACGACAGGCAGCGCGACCTGACCCGGGACCGGCTGCAGCGGGAGGAGAAGGAAAAGGAACGCCT
AAATGAAGAATTACATGAATTGAAAGAAGAGAATAAACTTTTAAAGGGAAAAAATACTCTTGCGAACAAGGAAAAGGAACATTACGAATGTGAAATAAAACGCCTCAATAAGGCTCTTCAGGATGCCT
TGAATATCAAGTGTTCATTTTCCGAGGACTGTTTGAGGAAGTCTCGAGTGGAATTCTGCCATGAGGAGATGAGAACAGAAATGGAAGTTCTGAAGCAGCAGGTGCAAATATACGAAGAAGACTTCAAA
AAGGAACGATCGGATCGAGAGAGACTTAATCAAGAGAAAGAGGAGCTACAGCAAATTAATGAAACTTCCCAATCCCAGTTGAACAGGCTGAATTCCCAGATAAAAGCTTGTCAGATGGAGAAAGAAAA
ACTAGAAAAGCAATTAAAACAGATGTATTGCCCACCCTGTAACTGCGGCTTGGTTTTCCACCTGCAAGATCCATGGGTACCAACAGGCCCTGGAGCTGTGCAGAAGCAACGGGAGCACCCACCAGACT
ATCAGTGGTATGCTCTTGACCAGCTTCCGCCAGATGTACAACACAAGGCAAATGGTTTATCCTCAGTAAAGAAAGTCCATCCGTAGAAGTACACACTAACAGAGAGAGACAACAGGCAACGAGGGAGC
GTGGCTGAGGACCCTCTTCTTTGTTTATACTGAGGCTTGTTTCTGCCACAAAGGCACATCATCTACCCTGTTATTTGTGCCTGGTCATGTTTTCCTTTGGTATGAATACAGGAAAAGGCTTCTGACAG
CTAAGATCCTGATCAAATTGGAGGAGCCAGTTATTATACAACCAAATACAACTTCCAGTTTCCTTGAAATGAGACTTGGCAGATGGATGATGCACGACTCCCTGAAAATCTCTTCAGCATATTGCTGT
TGGATGCACAAAAATGATTCTATGATTTAGGCAACTCAGTGTTTGCTGCAGGGATATTGTATGTTGATTTAAAGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCTGGGG
TAAAAATTTCTGCAGTTGTAAACGTTTAACATTGCTCCCATTCTTCTTCCACAGGGCCTTAGTTCTTTAGCTATTTGACTACATATTGTTGACCTCAGTGATCCTAAACGTAGAATTGAAGAGGTGTA
TATACCTCATTAAATTAAATAAGTGGTTCAATCTGAATAAGATGGTTAATTGGAAGCTATTCCTTAGACAGATCATTTCTTTAAGATGATGAGAAATTGTGCGCCTGCATCACAAGACTTGATTATGA
AAGATAAAGTCTTGGGCTGGGTGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATTGCTTTGAGGCCAGGAGTTCTAGACCAGCCTGGCCAGCATGGTGAAACCCCAT
CTCTACTATAAATACAAAAATTAGCCAGGCTCGTGGCACACACCTATAAACCCAGCTACTCAGGAGGCTTGAGGCGGGAGGATCACTTGAGCCCAGGGAGGCAGAGGTTGCTGTAAGTTGAGATCGCC
ACTGCACTCCAGCCTGGGAAATAGAGTGAGCAAGACTCAGTGCCCCCTACCCACCCACTCCACACCACCAAAAAAAAAAAAAAAAAAAAAAGGAAGACAAAGTCCTGATGGGATGATGATGGCTATAT
GGCTATGCTGTGTCCATATATACTTACAGAAATATTTCAGACATATGGATTTATAGTTAAATCTGTGTTTTTCCTTCCCTTGGATTTGATTAATTTTAATGAAAAACTTAATTCTGACTTCTCAAGCC
AATTAAAATGAAAATGGAATTTATTGAAA

hide sequence

RefSeq Acc Id:

XM_011532256 ⟹ XP_011530558

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,131,408 - 121,227,483 (-)	NCBI

Sequence:

show sequence

TGTATTTGTATCTGAGAGGTGAATATTAATAGTCTCTTGGCAGCAGAATGACTTTCTTAAAAAA
GGGGTTTCCCTGTGTATGGGTGGATTAACCTTTCAAAATACATGTTTCTACTTAAACCACTTAGTTACTGTTTGATTCAAAGAGTCTTAAAGACAGGTCTCCGTATTAGACCTTGTAATACGCTTACC
TAGATCTGAGAAGGACTTTCAGGATAGAACATGATTCCATGTGGATGGCTCATGAACAAAAATGAGAAACACGACGATAAACTGGTAATGTTCACCAATCAATCTGAAGATTCTGAAAGATGTGAAAG
CATGGAGCTGGACAAAAAAATCCAGGATCTGATTGAGAGAAATGCGTCTCCTCATCCAAAACGGTTCACCCCAGAGGCCATGCCAACTCACAGAAATCTATGTTCTCTGAAGCCACTTCCTGTTACTA
AAGAAATTCTTCAGCAGAAGAATTTGCTGGCACTTTCCACTTTAAAGTGTCCAGGCAGCTGTGACTACAAGAAGACTCCAGGAAAAACAGCTTCCATGGCACATTTTGTACAGGGCACATCTAGAATG
ATTGCCGCAGAAAGTTCTACGGAGCATAAAGAGTGTGCTGAACCATCAACAAGAAAGAACTTGATGAATTCTCTTGAACAAAAGATAAGGTGTTTGGAAAAACAAAGAAAAGAGCTCCTGGAAGTTAA
CCAGCAATGGGATCAGCAATTTAGAAGTATGAAAGAGTTATATGAAAGAAAGGTAGCAGAGCTGAAGACGAAACTGGACGCCGCGGAAAGATTCCTCAGCACGCGGGAGAAGGATCCGCATCAGAGGC
AGAGAAAGGACGACAGGCAGAGAGAGGACGACAGGCAGCGCGACCTGACCCGGGACCGGCTGCAGCGGGAGGAGAAGGAAAAGGAACGCCTAAATGAAGAATTACATGAATTGAAAGAAGAGAATAAA
CTTTTAAAGGGAAAAAATACTCTTGCGAACAAGGAAAAGGAACATTACGAATGTGAAATAAAACGCCTCAATAAGGCTCTTCAGGATGCCTTGAATATCAAGTGTTCATTTTCCGAGGACTGTTTGAG
GAAGTCTCGAGTGGAATTCTGCCATGAGGAGATGAGAACAGAAATGGAAGTTCTGAAGCAGCAGGTGCAAATATACGAAGAAGACTTCAAAAAGGAACGATCGGATCGAGAGAGACTTAATCAAGAGA
AAGAGGAGCTACAGCAAATTAATGAAACTTCCCAATCCCAGTTGAACAGGCTGAATTCCCAGATAAAAGCTTGTCAGATGGAGAAAGAAAAACTAGAAAAGCAATTAAAACAGATGTATTGCCCACCC
TGTAACTGCGGCTTGGTTTTCCACCTGCAAGATCCATGGGTACCAACAGGCCCTGGAGCTGTGCAGAAGCAACGGGAGCACCCACCAGACTATCAGTGGTATGCTCTTGACCAGCTTCCGCCAGATGT
ACAACACAAGGCAAATGGTTTATCCTCAGTAAAGAAAGTCCATCCGTAGAAGTACACACTAACAGAGAGAGACAACAGGCAACGAGGGAGCGTGGCTGAGGACCCTCTTCTTTGTTTATACTGAGGCT
TGTTTCTGCCACAAAGGCACATCATCTACCCTGTTATTTGTGCCTGGTCATGTTTTCCTTTGGTATGAATACAGGAAAAGGCTTCTGACAGCTAAGATCCTGATCAAATTGGAGGAGCCAGTTATTAT
ACAACCAAATACAACTTCCAGTTTCCTTGAAATGAGACTTGGCAGATGGATGATGCACGACTCCCTGAAAATCTCTTCAGCATATTGCTGTTGGATGCACAAAAATGATTCTATGATTTAGGCAACTC
AGTGTTTGCTGCAGGGATATTGTATGTTGATTTAAAGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCTGGGGTAAAAATTTCTGCAGTTGTAAACGTTTAACATTGCTC
CCATTCTTCTTCCACAGGGCCTTAGTTCTTTAGCTATTTGACTACATATTGTTGACCTCAGTGATCCTAAACGTAGAATTGAAGAGGTGTATATACCTCATTAAATTAAATAAGTGGTTCAATCTGAA
TAAGATGGTTAATTGGAAGCTATTCCTTAGACAGATCATTTCTTTAAGATGATGAGAAATTGTGCGCCTGCATCACAAGACTTGATTATGAAAGATAAAGTCTTGGGCTGGGTGCAGTGGCTCATGCC
TATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATTGCTTTGAGGCCAGGAGTTCTAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTATAAATACAAAAATTAGCCAGGCTCGTGGC
ACACACCTATAAACCCAGCTACTCAGGAGGCTTGAGGCGGGAGGATCACTTGAGCCCAGGGAGGCAGAGGTTGCTGTAAGTTGAGATCGCCACTGCACTCCAGCCTGGGAAATAGAGTGAGCAAGACT
CAGTGCCCCCTACCCACCCACTCCACACCACCAAAAAAAAAAAAAAAAAAAAAAGGAAGACAAAGTCCTGATGGGATGATGATGGCTATATGGCTATGCTGTGTCCATATATACTTACAGAAATATTT
CAGACATATGGATTTATAGTTAAATCTGTGTTTTTCCTTCCCTTGGATTTGATTAATTTTAATGAAAAACTTAATTCTGACTTCTCAAGCCAATTAAAATGAAAATG

hide sequence

RefSeq Acc Id:

XM_011532257 ⟹ XP_011530559

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,131,408 - 121,227,483 (-)	NCBI

Sequence:

show sequence

TGTATTTGTATCTGAGAGGTGAATATTAATAGTCTCTTGGCAGCAGAATGACTTTCTTAAAAAAGGGGTTTCCCTGTGTATGGGTGGATTAACCTTTCAAAATACATGTTTCTACTTAAACCACTTAG
TTACTGTTTGATTCAAAGAGTCTTAAAGACAGGTCTCCGTATTAGACCTTGTAATACGCTTACCTAGATCTGAGAAGGACTTTCAGGATAGAACATGATTCCATGTGGATGGCTCATGAACAAAAATG
AGAAACACGACGATAAACTGGTAATGTTCACCAATCAATCTGAAGATTCTGAAAGATGTGAAAGCATGGAGCTGGACAAAAAAATCCAGGATCTGATTGAGAGAAATGCGTCTCCTCATCCAAAACGG
TTCACCCCAGAGGCCATGCCAACTCACAGAAATCTATGTTCTCTGAAGCCACTTCCTGTTACTAAAGAAATTCTTCAGCAGAAGAATTTGCTGGCACTTTCCACTTTAAAGTGTCCAGGCAGCTGTGA
CTACAAGAAGACTCCAGGAAAAACAGCTTCCATGGCACATTTTGTACAGGGCACATCTAGAATGATTGCCGCAGAAAGTTCTACGGAGCATAAAGAGTGTGCTGAACCATCAACAAGAAAGAACTTGA
TGAATTCTCTTGAACAAAAGATAAGGTGTTTGGAAAAACAAAGAAAAGAGCTCCTGGAAGTTAACCAGCAATGGGATCAGCAATTTAGAAGTATGAAAGAGTTATATGAAAGAAAGGTAGCAGAGCTG
AAGACGAAACTGGACGCCGCGGAAAGATTCCTCAGCACGCGGGAGAAGGATCCGCATCAGAGGCAGAGAAAGGACGACAGGCAGAGAGAGGACGACAGGCAGCGCGACCTGACCCGGGACCGGCTGCA
GCGGGAGGAGAAGGAAAAGGAACGCCTAAATGAAGAATTACATGAATTGAAAGAAGAGAATAAACTTTTAAAGGGAAAAAATACTCTTGCGAACAAGGAAAAGGAACATTACGAATGTGAAATAAAAC
GCCTCAATAAGGCTCTTCAGGATGCCTTGAATATCAAGTGTTCATTTTCCGAGGACTGTTTGAGGAAGTCTCGAGTGGAATTCTGCCATGAGGAGATGAGAACAGAAATGGAAGTTCTGAAGCAGCAG
GTGCAAATATACGAAGAAGACTTCAAAAAGGAACGATCGGATCGAGAGAGACTTAATCAAGAGAAAGAGGAGCTACAGCAAATTAATGAAACTTCCCAATCCCAGTTGAACAGGCTGAATTCCCAGAT
AAAAGCTTGTCAGATGGAGAAAGAAAAACTAGAAAAGCAATTAAAACAGATGTATTGCCCACCCTGTAACTGCGGCTTGGTTTTCCACCTGCAAGATCCATGGGTACCAACAGGCCCTGGAGCTGTGC
AGAAGCAACGGGAGCACCCAGTTTATCCTCAGTAAAGAAAGTCCATCCGTAGAAGTACACACTAACAGAGAGAGACAACAGGCAACGAGGGAGCGTGGCTGAGGACCCTCTTCTTTGTTTATACTGAG
GCTTGTTTCTGCCACAAAGGCACATCATCTACCCTGTTATTTGTGCCTGGTCATGTTTTCCTTTGGTATGAATACAGGAAAAGGCTTCTGACAGCTAAGATCCTGATCAAATTGGAGGAGCCAGTTAT
TATACAACCAAATACAACTTCCAGTTTCCTTGAAATGAGACTTGGCAGATGGATGATGCACGACTCCCTGAAAATCTCTTCAGCATATTGCTGTTGGATGCACAAAAATGATTCTATGATTTAGGCAA
CTCAGTGTTTGCTGCAGGGATATTGTATGTTGATTTAAAGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCTGGGGTAAAAATTTCTGCAGTTGTAAACGTTTAACATTG
CTCCCATTCTTCTTCCACAGGGCCTTAGTTCTTTAGCTATTTGACTACATATTGTTGACCTCAGTGATCCTAAACGTAGAATTGAAGAGGTGTATATACCTCATTAAATTAAATAAGTGGTTCAATCT
GAATAAGATGGTTAATTGGAAGCTATTCCTTAGACAGATCATTTCTTTAAGATGATGAGAAATTGTGCGCCTGCATCACAAGACTTGATTATGAAAGATAAAGTCTTGGGCTGGGTGCAGTGGCTCAT
GCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATTGCTTTGAGGCCAGGAGTTCTAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTATAAATACAAAAATTAGCCAGGCTCGT
GGCACACACCTATAAACCCAGCTACTCAGGAGGCTTGAGGCGGGAGGATCACTTGAGCCCAGGGAGGCAGAGGTTGCTGTAAGTTGAGATCGCCACTGCACTCCAGCCTGGGAAATAGAGTGAGCAAG
ACTCAGTGCCCCCTACCCACCCACTCCACACCACCAAAAAAAAAAAAAAAAAAAAAAGGAAGACAAAGTCCTGATGGGATGATGATGGCTATATGGCTATGCTGTGTCCATATATACTTACAGAAATA
TTTCAGACATATGGATTTATAGTTAAATCTGTGTTTTTCCTTCCCTTGGATTTGATTAATTTTAATGAAAAACTTAATTCTGACTTCTCAAGCCAATTAAAATGAAAATG

hide sequence

RefSeq Acc Id:

XM_017008625 ⟹ XP_016864114

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,136,424 - 121,166,334 (-)	NCBI

Sequence:

show sequence

CTTAGATGACCAAAGGCACAAGCAGTGAGTGGCAGAGCCAAGCTGTGAGTCCAGATAATCTAATTCTAGAGCTAGATCTTTTAGTCATTACTAATCCTCTCTTTCCTACCTACATAGCACATACACTT
AAAAATTCATGCAAATAGATTCAGGAAACAAAGAAGGTTTTTCAGCTCCCATTGTAAAAGCATAAAAAGGAAAAAGGCATGTTTCTTTTACCTGCCAAAGAATGCCTCCAATAACTTATAGAAATATA
GTACTCTCCTCTTGGACTAATTTTAAGATAATTATTGTCCACCAGAATGATGGTTATAGACCAGTGACTGGTAGTCCTTGTTCCTTTACCACATTTCCCTTTGTTAATTTTAATTTTCTTTCCTCTGT
ATAATATTTTAGTGACTTCAGAAATGAAGACTCTTCACAACAGCCTTGGAAACATGGAATGACACCTCTGTTTCTCTGAAAGTGATTTCAGCTAGTGATACTTCTCATGAAACAAAGCTTGACTAAAA
GCCAGACTCTTAAAATATGTGGCACAATGTGAGAGGGATGGAGGTGAAGTGAACAGAGCATATGTAACAGAAAAGACCCAATTAATTCTTAGGGATGGCATATTGAAAGTCTCATTTTTCTGAAACCA
AACTTGTGGCTCTTCAGAAGAGTTATTACTTATTCATAAATAACCATATGGCTCTCTTGAGCTAATAGAAAATCTGTTTGTTGTTTATCTGCATAACAGAAGAGGCAAAGGAATTGTAAAGAAAGAAG
CAAAGACTCCAGGAAAAACAGCTTCCATGGCACATTTTGTACAGGGCACATCTAGAATGATTGCCGCAGAAAGTTCTACGGAGCATAAAGAGTGTGCTGAACCATCAACAAGAAAGAACTTGATGAAT
TCTCTTGAACAAAAGATAAGGTGTTTGGAAAAACAAAGAAAAGAGCTCCTGGAAGTTAACCAGCAATGGGATCAGCAATTTAGAAGTATGAAAGAGTTATATGAAAGAAAGGTAGCAGAGCTGAAGAC
GAAACTGGACGCCGCGGAAAGATTCCTCAGCACGCGGGAGAAGGATCCGCATCAGAGGCAGAGAAAGGACGACAGGCAGAGAGAGGACGACAGGCAGCGCGACCTGACCCGGGACCGGCTGCAGCGGG
AGGAGAAGGAAAAGGAACGCCTAAATGAAGAATTACATGAATTGAAAGAAGAGAATAAACTTTTAAAGGGAAAAAATACTCTTGCGAACAAGGAAAAGGAACATTACGAATGTGAAATAAAACGCCTC
AATAAGGCTCTTCAGGATGCCTTGAATATCAAGTGTTCATTTTCCGAGGACTGTTTGAGGAAGTCTCGAGTGGAATTCTGCCATGAGGAGATGAGAACAGAAATGGAAGTTCTGAAGCAGCAGGTGCA
AATATACGAAGAAGACTTCAAAAAGGAACGATCGGATCGAGAGAGACTTAATCAAGAGAAAGAGGAGCTACAGCAAATTAATGAAACTTCCCAATCCCAGTTGAACAGGCTGAATTCCCAGATAAAAG
CTTGTCAGATGGAGAAAGAAAAACTAGAAAAGCAATTAAAACAGATGTATTGCCCACCCTGTAACTGCGGCTTGGTTTTCCACCTGCAAGATCCATGGGTACCAACAGGCCCTGGAGCTGTGCAGAAG
CAACGGGAGCACCCACCAGACTATCAGTGGTATGCTCTTGACCAGCTTCCGCCAGATGTACAACACAAGGCAAATGATGGTGTCTTGCTCCACCTCCAGTCTGTTGCCAGGCTGGTCTCGAACTCCTG
GCCTCAAGTGATCCTCCTGCCTCTGGCTCCCAAAGTGCTGAAATTTCAGGTTTATCCTCAGTAAAGAAAGTCCATCCGTAGAAGTACACACTAACAGAGAGAGACAACAGGCAACGAGGGAGCGTGGC
TGAGGACCCTCTTCTTTGTTTATACTGAGGCTTGTTTCTGCCACAAAGGCACATCATCTACCCTGTTATTTGTGCCTGGTCATGTTTTCCTTTGGTATGAATACAGGAAAAGGCTTCTGACAGCTAAG
ATCCTGATCAAATTGGAGGAGCCAGTTATTATACAACCAAATACAACTTCCAGTTTCCTTGAAATGAGACTTGGCAGATGGATGATGCACGACTCCCTGAAAATCTCTTCAGCATATTGCTGTTGGAT
GCACAAAAATGATTCTATGATTTAGGCAACTCAGTGTTTGCTGCAGGGATATTGTATGTTGATTTAAAGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCTGGGGTAAAA
ATTTCTGCAGTTGTAAACGTTTAACATTGCTCCCATTCTTCTTCCACAGGGCCTTAGTTCTTTAGCTATTTGACTACATATTGTTGACCTCAGTGATCCTAAACGTAGAATTGAAGAGGTGTATATAC
CTCATTAAATTAAATAAGTGGTTCAATCTGAATAAGATGGTTAATTGGAAGCTATTCCTTAGACAGATCATTTCTTTAAGATGATGAGAAATTGTGCGCCTGCATCACAAGACTTGATTATGAAAGAT
AAAGTCTTGGGCTGGGTGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATTGCTTTGAGGCCAGGAGTTCTAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTA
CTATAAATACAAAAATTAGCCAGGCTCGTGGCACACACCTATAAACCCAGCTACTCAGGAGGCTTGAGGCGGGAGGATCACTTGAGCCCAGGGAGGCAGAGGTTGCTGTAAGTTGAGATCGCCACTGC
ACTCCAGCCTGGGAAATAGAGTGAGCAAGACTCAGTGCCCCCTACCCACCCACTCCACACCACCAAAAAAAAAAAAAAAAAAAAAAGGAAGACAAAGTCCTGATGGGATGATGATGGCTATATGGCTA
TGCTGTGTCCATATATACTTACAGAAATATTTCAGACATATGGATTTATAGTTAAATCTGTGTTTTTCCTTCCCTTGGATTTGATTAATTTTAATGAAAAACTTAATTCTGACTTCTCAAGCCAATTA
AAATGAAAATG

hide sequence

RefSeq Acc Id:

XM_047416181 ⟹ XP_047272137

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,135,778 - 121,227,483 (-)	NCBI

RefSeq Acc Id:

XM_047416182 ⟹ XP_047272138

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,131,408 - 121,227,483 (-)	NCBI

RefSeq Acc Id:

XM_054350851 ⟹ XP_054206826

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	4	124,435,731 - 124,531,810 (-)	NCBI

RefSeq Acc Id:

XM_054350852 ⟹ XP_054206827

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	4	124,439,714 - 124,531,810 (-)	NCBI

RefSeq Acc Id:

XM_054350853 ⟹ XP_054206828

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	4	124,440,747 - 124,487,846 (-)	NCBI

RefSeq Acc Id:

XM_054350854 ⟹ XP_054206829

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	4	124,435,731 - 124,531,810 (-)	NCBI

RefSeq Acc Id:

XM_054350855 ⟹ XP_054206830

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	4	124,435,731 - 124,531,810 (-)	NCBI

RefSeq Acc Id:

XM_054350856 ⟹ XP_054206831

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	4	124,440,747 - 124,470,659 (-)	NCBI


Protein RefSeqs	NP_001122315	(Get FASTA)	NCBI Sequence Viewer
	NP_001231693	(Get FASTA)	NCBI Sequence Viewer
	NP_079149	(Get FASTA)	NCBI Sequence Viewer
	XP_011530558	(Get FASTA)	NCBI Sequence Viewer
	XP_011530559	(Get FASTA)	NCBI Sequence Viewer
	XP_016864114	(Get FASTA)	NCBI Sequence Viewer
	XP_047272137	(Get FASTA)	NCBI Sequence Viewer
	XP_047272138	(Get FASTA)	NCBI Sequence Viewer
	XP_054206826	(Get FASTA)	NCBI Sequence Viewer
	XP_054206827	(Get FASTA)	NCBI Sequence Viewer
	XP_054206828	(Get FASTA)	NCBI Sequence Viewer
	XP_054206829	(Get FASTA)	NCBI Sequence Viewer
	XP_054206830	(Get FASTA)	NCBI Sequence Viewer
	XP_054206831	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI28409	(Get FASTA)	NCBI Sequence Viewer
	AAL02151	(Get FASTA)	NCBI Sequence Viewer
	ABQ40006	(Get FASTA)	NCBI Sequence Viewer
	BAB15018	(Get FASTA)	NCBI Sequence Viewer
	BAF83098	(Get FASTA)	NCBI Sequence Viewer
	BAG62667	(Get FASTA)	NCBI Sequence Viewer
	BAG64285	(Get FASTA)	NCBI Sequence Viewer
	CAC85929	(Get FASTA)	NCBI Sequence Viewer
	EAX05263	(Get FASTA)	NCBI Sequence Viewer
	EAX05264	(Get FASTA)	NCBI Sequence Viewer
	EAX05265	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000057513
	ENSP00000057513.3
	ENSP00000426613
	ENSP00000426613.1
	ENSP00000427106
	ENSP00000427106.1
GenBank Protein	Q96KP6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001122315 ⟸ NM_001128843
- Peptide Label:	isoform 2
- UniProtKB:	Q96KP6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MNKNEKHDDKLVMFTNQSEDSERCESMELDKKIQDLIERNASPHPKRFTPEAMPTHRNLCSLKTPGKTASMAHFVQGTSRMIAAESSTEHKECAEPSTRKNLMNSLEQKIRCLEKQRKELLEVNQQWD QQFRSMKELYERKVAELKTKLDAAERFLSTREKDPHQRQRKDDRQREDDRQRDLTRDRLQREEKEKERLNEELHELKEENKLLKGKNTLANKEKEHYECEIKRLNKALQDALNIKCSFSEDCLRKSRV EFCHEEMRTEMEVLKQQVQIYEEDFKKERSDRERLNQEKEELQQINETSQSQLNRLNSQIKACQMEKEKLEKQLKQMYCPPCNCGLVFHLQDPWVPTGPGAVQKQREHPVYPQ hide sequence

RefSeq Acc Id:	NP_079149 ⟸ NM_024873
- Peptide Label:	isoform 1
- UniProtKB:	Q96PQ3 (UniProtKB/Swiss-Prot), B4E023 (UniProtKB/Swiss-Prot), B4DVF5 (UniProtKB/Swiss-Prot), A8K2Z4 (UniProtKB/Swiss-Prot), A1A574 (UniProtKB/Swiss-Prot), Q9H780 (UniProtKB/Swiss-Prot), Q96KP6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAHFVQGTSRMIAAESSTEHKECAEPSTRKNLMNSLEQKIRCLEKQRKELLEVNQQWDQQFRSMKELYERKVAELKTKLDAAERFLSTREKDPHQRQRKDDRQREDDRQRDLTRDRLQREEKEKERLN EELHELKEENKLLKGKNTLANKEKEHYECEIKRLNKALQDALNIKCSFSEDCLRKSRVEFCHEEMRTEMEVLKQQVQIYEEDFKKERSDRERLNQEKEELQQINETSQSQLNRLNSQIKACQMEKEKL EKQLKQMYCPPCNCGLVFHLQDPWVPTGPGAVQKQREHPPDYQWYALDQLPPDVQHKANGLSSVKKVHP hide sequence

RefSeq Acc Id:	NP_001231693 ⟸ NM_001244764
- Peptide Label:	isoform 3
- UniProtKB:	Q96KP6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MIPCGWLMNKNEKHDDKLVMFTNQSEDSERCESMELDKKIQDLIERNASPHPKRFTPEAMPTHRNLCSLKTPGKTASMAHFVQGTSRMIAAESSTEHKECAEPSTRKNLMNSLEQKIRCLEKQRKELL EVNQQWDQQFRSMKELYERKVAELKTKLDAAERFLSTREKDPHQRQRKDDRQREDDRQRDLTRDRLQREEKEKERLNEELHELKEENKLLKGKNTLANKEKEHYECEIKRLNKALQDALNIKCSFSED CLRKSRVEFCHEEMRTEMEVLKQQVQIYEEDFKKERSDRERLNQEKEELQQINETSQSQLNRLNSQIKACQMEKEKLEKQLKQMYCPPCNCGLVFHLQDPWVPTGPGAVQKQREHPVYPQ hide sequence

RefSeq Acc Id:

XP_011530558 ⟸ XM_011532256

- Peptide Label:

isoform X1

- Sequence:

show sequence

MIPCGWLMNKNEKHDDKLVMFTNQSEDSERCESMELDKKIQDLIERNASPHPKRFTPEAMPTHRNLCSLKPLPVTKEILQQKNLLALSTLKCPGSCDYKKTPGKTASMAHFVQGTSRMIAAESSTEHK
ECAEPSTRKNLMNSLEQKIRCLEKQRKELLEVNQQWDQQFRSMKELYERKVAELKTKLDAAERFLSTREKDPHQRQRKDDRQREDDRQRDLTRDRLQREEKEKERLNEELHELKEENKLLKGKNTLAN
KEKEHYECEIKRLNKALQDALNIKCSFSEDCLRKSRVEFCHEEMRTEMEVLKQQVQIYEEDFKKERSDRERLNQEKEELQQINETSQSQLNRLNSQIKACQMEKEKLEKQLKQMYCPPCNCGLVFHLQ
DPWVPTGPGAVQKQREHPPDYQWYALDQLPPDVQHKANGLSSVKKVHP

hide sequence

RefSeq Acc Id:

XP_011530559 ⟸ XM_011532257

- Peptide Label:

isoform X3

- Sequence:

show sequence

MIPCGWLMNKNEKHDDKLVMFTNQSEDSERCESMELDKKIQDLIERNASPHPKRFTPEAMPTHR
NLCSLKPLPVTKEILQQKNLLALSTLKCPGSCDYKKTPGKTASMAHFVQGTSRMIAAESSTEHKECAEPSTRKNLMNSLEQKIRCLEKQRKELLEVNQQWDQQFRSMKELYERKVAELKTKLDAAERF
LSTREKDPHQRQRKDDRQREDDRQRDLTRDRLQREEKEKERLNEELHELKEENKLLKGKNTLANKEKEHYECEIKRLNKALQDALNIKCSFSEDCLRKSRVEFCHEEMRTEMEVLKQQVQIYEEDFKK
ERSDRERLNQEKEELQQINETSQSQLNRLNSQIKACQMEKEKLEKQLKQMYCPPCNCGLVFHLQDPWVPTGPGAVQKQREHPVYPQ

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Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q96KP6-F1-model_v2	AlphaFold	Q96KP6	1-325	view protein structure

RGD ID:

6868392

Promoter ID:

EPDNEW_H7361

Type:

multiple initiation site

Name:

TNIP3_1

Description:

TNFAIP3 interacting protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	121,164,321 - 121,164,381	EPDNEW

Database	Acc Id	Source(s)
COSMIC	TNIP3	COSMIC
Ensembl Genes	ENSG00000050730	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000057513	ENTREZGENE
	ENST00000057513.8	UniProtKB/Swiss-Prot
	ENST00000507879	ENTREZGENE
	ENST00000507879.5	UniProtKB/Swiss-Prot
	ENST00000509841	ENTREZGENE
	ENST00000509841.1	UniProtKB/Swiss-Prot
Gene3D-CATH	Nemo cc2-lz domain - 1d5 darpin complex	UniProtKB/Swiss-Prot
GTEx	ENSG00000050730	GTEx
HGNC ID	HGNC:19315	ENTREZGENE
Human Proteome Map	TNIP3	Human Proteome Map
InterPro	CC2-LZ_dom	UniProtKB/Swiss-Prot
KEGG Report	hsa:79931	UniProtKB/Swiss-Prot
NCBI Gene	79931	ENTREZGENE
OMIM	608019	OMIM
PANTHER	PTHR31882:SF2	UniProtKB/Swiss-Prot
	TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER	UniProtKB/Swiss-Prot
Pfam	CC2-LZ	UniProtKB/Swiss-Prot
PharmGKB	PA134934429	PharmGKB
UniProt	A1A574	ENTREZGENE
	A5HU65_HUMAN	UniProtKB/TrEMBL
	A8K2Z4	ENTREZGENE
	B4DVF5	ENTREZGENE
	B4E023	ENTREZGENE
	H0Y9J7_HUMAN	UniProtKB/TrEMBL
	Q96KP6	ENTREZGENE
	Q96PQ3	ENTREZGENE
	Q9H780	ENTREZGENE
	TNIP3_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	A1A574	UniProtKB/Swiss-Prot
	A8K2Z4	UniProtKB/Swiss-Prot
	B4DVF5	UniProtKB/Swiss-Prot
	B4E023	UniProtKB/Swiss-Prot
	Q96PQ3	UniProtKB/Swiss-Prot
	Q9H780	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar