CDY3P (chromodomain Y-linked 3 pseudogene) - Rat Genome Database

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Gene: CDY3P (chromodomain Y-linked 3 pseudogene) Homo sapiens
Analyze
Symbol: CDY3P
Name: chromodomain Y-linked 3 pseudogene
RGD ID: 1346553
HGNC Page HGNC:23849
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: chromodomain protein, Y-linked 3 pseudogene
Related Functional Gene: CDY1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y9,165,228 - 9,168,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY9,166,085 - 9,167,702 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y9,002,837 - 9,005,636 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y9,062,732 - 9,065,736 (-)NCBINCBI36Build 36hg18NCBI36
CeleraY237,309 - 240,108 (+)NCBICelera
Cytogenetic MapYp11.2NCBI
HuRefY6,543,700 - 6,546,499 (-)NCBIHuRef
T2T-CHM13v2.0Y8,771,366 - 8,774,165 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074   PMID:12815422  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:143
Count of miRNA genes:141
Interacting mature miRNAs:143
Transcripts:ENST00000454543
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
DYF77S1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y23,858,423 - 23,858,566UniSTSGRCh37
GRCh37Y9,005,201 - 9,005,344UniSTSGRCh37
CeleraY8,530,626 - 8,530,769UniSTS
CeleraY237,601 - 237,744RGD
Cytogenetic MapYq11.223UniSTS
Cytogenetic MapYp11.2UniSTS
HuRefY6,546,064 - 6,546,207UniSTS
HuRefY17,408,317 - 17,408,460UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1
Below cutoff 24 16 8 4 9 66 20 37 2 42 4 4 13 40

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000454543
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY9,166,085 - 9,167,702 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CDY3P COSMIC
Ensembl Genes ENSG00000232235 Ensembl
GTEx ENSG00000232235 GTEx
HGNC ID HGNC:23849 ENTREZGENE
Human Proteome Map CDY3P Human Proteome Map
NCBI Gene 286556 ENTREZGENE
PharmGKB PA134980626 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-19 CDY3P  chromodomain Y-linked 3 pseudogene    chromodomain protein, Y-linked 3 pseudogene  Symbol and/or name change 5135510 APPROVED