OR1M4P (olfactory receptor family 1 subfamily M member 4 pseudogene) - Rat Genome Database

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Gene: OR1M4P (olfactory receptor family 1 subfamily M member 4 pseudogene) Homo sapiens
Analyze
Symbol: OR1M4P
Name: olfactory receptor family 1 subfamily M member 4 pseudogene
RGD ID: 1346076
HGNC Page HGNC:31244
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38199,082,936 - 9,083,398 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl199,083,112 - 9,083,398 (-)EnsemblGRCh38hg38GRCh38
GRCh37199,193,612 - 9,194,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36199,054,512 - 9,055,174 (-)NCBINCBI36Build 36hg18NCBI36
Celera199,089,074 - 9,089,536 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,775,286 - 8,775,748 (-)NCBIHuRef
CHM1_1199,193,317 - 9,193,779 (-)NCBICHM1_1
T2T-CHM13v2.0199,209,118 - 9,209,580 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:218
Interacting mature miRNAs:228
Transcripts:ENST00000589199
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium 2
Low 2 1 7 1 22 1
Below cutoff 43 51 16 1 42 1 62 31 41 2 26 19 19 42

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000589199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl199,083,112 - 9,083,398 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC OR1M4P COSMIC
Ensembl Genes ENSG00000267154 Ensembl
GTEx ENSG00000267154 GTEx
HGNC ID HGNC:31244 ENTREZGENE
Human Proteome Map OR1M4P Human Proteome Map
NCBI Gene 403232 ENTREZGENE
PharmGKB PA134971237 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR1M4P  olfactory receptor family 1 subfamily M member 4 pseudogene  OR1M4P  olfactory receptor, family 1, subfamily M, member 4 pseudogene  Symbol and/or name change 5135510 APPROVED