NPM1P12 (nucleophosmin 1 pseudogene 12) - Rat Genome Database

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Gene: NPM1P12 (nucleophosmin 1 pseudogene 12) Homo sapiens
Analyze
Symbol: NPM1P12
Name: nucleophosmin 1 pseudogene 12
RGD ID: 1345257
HGNC Page HGNC:7914
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 12
Related Functional Gene: NPM1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387149,333,997 - 149,335,170 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7149,334,024 - 149,334,857 (+)EnsemblGRCh38hg38GRCh38
GRCh377149,031,088 - 149,032,261 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367148,661,842 - 148,663,302 (+)NCBINCBI36Build 36hg18NCBI36
Celera7143,700,207 - 143,701,463 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7143,107,880 - 143,109,136 (+)NCBIHuRef
CHM1_17149,039,669 - 149,040,925 (+)NCBICHM1_1
T2T-CHM13v2.07150,515,770 - 150,516,944 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27148,369,010 - 148,370,266 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:44
Interacting mature miRNAs:44
Transcripts:ENST00000423757
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
Npm1-rs  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377149,032,011 - 149,032,220UniSTSGRCh37
Build 367148,662,944 - 148,663,153RGDNCBI36
Celera7143,701,213 - 143,701,422RGD
HuRef7143,108,886 - 143,109,095UniSTS
CRA_TCAGchr7v27148,370,016 - 148,370,225UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 4 3 183 5 4 9 16 6 1 2
Below cutoff 786 891 541 156 424 106 1520 634 1019 126 563 563 52 481 974 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000423757
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7149,334,024 - 149,334,857 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC NPM1P12 COSMIC
Ensembl Genes ENSG00000215311 Ensembl
GTEx ENSG00000215311 GTEx
HGNC ID HGNC:7914 ENTREZGENE
Human Proteome Map NPM1P12 Human Proteome Map
NCBI Gene 10835 ENTREZGENE
PharmGKB PA31716 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-30 NPM1P12  nucleophosmin 1 pseudogene 12    nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 12  Symbol and/or name change 5135510 APPROVED