FABP5P2 (fatty acid binding protein 5 pseudogene 2) - Rat Genome Database

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Gene: FABP5P2 (fatty acid binding protein 5 pseudogene 2) Homo sapiens
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Symbol: FABP5P2
Name: fatty acid binding protein 5 pseudogene 2
RGD ID: 1345237
HGNC Page HGNC:31060
Description: INTERACTS WITH arsane; arsenic atom; chloropicrin
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: FABP5L2
Related Functional Gene: FABP5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381351,966,682 - 51,967,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1351,966,742 - 51,967,149 (+)EnsemblGRCh38hg38GRCh38
GRCh371352,540,818 - 52,541,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361351,438,821 - 51,439,498 (+)NCBINCBI36Build 36hg18NCBI36
Celera1333,589,471 - 33,590,114 (+)NCBICelera
Cytogenetic Map13q14.3NCBI
HuRef1333,329,224 - 33,329,867 (+)NCBIHuRef
CHM1_11352,508,378 - 52,508,952 (+)NCBICHM1_1
T2T-CHM13v2.01351,181,352 - 51,182,010 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FABP5P2Humanarsane multiple interactionsEXP 6480464[sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of FABP5P2 more ...CTDPMID:32525701
FABP5P2Humanarsenic atom multiple interactionsEXP 6480464[sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of FABP5P2 more ...CTDPMID:32525701
FABP5P2Humanchloropicrin affects expressionEXP 6480464chloropicrin affects the expression of FABP5L2 mRNACTDPMID:26352163
FABP5P2Humanmethylparaben decreases expressionEXP 6480464methylparaben results in decreased expression of FABP5P2 mRNACTDPMID:31745603
FABP5P2Humansodium arsenate multiple interactionsEXP 6480464[sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of FABP5P2 more ...CTDPMID:32525701
FABP5P2Humanzoledronic acid decreases expressionEXP 6480464Zoledronic Acid results in decreased expression of FABP5L2 mRNACTDPMID:24714768



.

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:42
Interacting mature miRNAs:42
Transcripts:ENST00000439042
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2292823PRSTS88_HProstate tumor susceptibility QTL 88 (human)Prostate tumor susceptibility134153205867532058Human
2289192BW359_HBody weight QTL 359 (human)0.0344Body fat amountpercent fat134998940475989404Human
1643298BW212_HBody weight QTL 212 (human)2.670.0002Body weightBMI134153205867532058Human

GDB:533050  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371352,538,975 - 52,539,206UniSTSGRCh37
Build 361351,436,976 - 51,437,207RGDNCBI36
Celera1333,587,613 - 33,587,844RGD
Cytogenetic Map13q14.3UniSTS
HuRef1333,327,366 - 33,327,597UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
874 1332 1642 1138 2825 773 1069 2 315 456 203 1637 2946 3001 13 2046 379 1030 759 115



Ensembl Acc Id: ENST00000439042
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1351,966,742 - 51,967,149 (+)Ensembl
RefSeq Acc Id: XM_001132811
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361351,438,821 - 51,439,498 (+)NCBI Archive
RefSeq Acc Id: XR_914995
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
CHM1_11352,508,378 - 52,508,952 (+)NCBI


Database
Acc Id
Source(s)
COSMIC FABP5P2 COSMIC
Ensembl Genes ENSG00000236044 Ensembl
GTEx ENSG00000236044 GTEx
HGNC ID HGNC:31060 ENTREZGENE
Human Proteome Map FABP5P2 Human Proteome Map
NCBI Gene FABP5P2 ENTREZGENE
PharmGKB PA134901344 PharmGKB


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 FABP5P2  fatty acid binding protein 5 pseudogene 2  FABP5L2  fatty acid binding protein 5-like 2  Symbol and/or name change 5135510 APPROVED