OR4A50P (olfactory receptor family 4 subfamily A member 50 pseudogene) - Rat Genome Database

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Gene: OR4A50P (olfactory receptor family 4 subfamily A member 50 pseudogene) Homo sapiens
Analyze
Symbol: OR4A50P
Name: olfactory receptor family 4 subfamily A member 50 pseudogene
RGD ID: 1345225
HGNC Page HGNC:31269
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,475,944 - 55,476,429 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,475,943 - 55,478,512 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,243,420 - 55,243,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,999,895 - 55,000,580 (+)NCBINCBI36Build 36hg18NCBI36
Celera1152,586,811 - 52,587,297 (+)NCBICelera
Cytogenetic Map11q11NCBI
HuRef1151,572,798 - 51,573,284 (+)NCBIHuRef
CHM1_11155,108,678 - 55,109,164 (+)NCBICHM1_1
T2T-CHM13v2.01155,414,259 - 55,414,745 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14983052  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:96
Interacting mature miRNAs:97
Transcripts:ENST00000526321
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-82772  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371155,242,347 - 55,242,619UniSTSGRCh37
Build 361154,998,923 - 54,999,195RGDNCBI36
Celera1152,585,738 - 52,586,010RGD
Cytogenetic Map11q11UniSTS
HuRef1151,571,725 - 51,571,997UniSTS
TNG Radiation Hybrid Map1123801.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 6 1
Below cutoff 4 6 3 22 9 6 4 8 10 8 2 6

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000526321
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1155,475,943 - 55,478,512 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC OR4A50P COSMIC
Ensembl Genes ENSG00000255294 Ensembl
GTEx ENSG00000255294 GTEx
HGNC ID HGNC:31269 ENTREZGENE
Human Proteome Map OR4A50P Human Proteome Map
NCBI Gene 403256 ENTREZGENE
PharmGKB PA134934033 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR4A50P  olfactory receptor family 4 subfamily A member 50 pseudogene    olfactory receptor, family 4, subfamily A, member 50 pseudogene  Symbol and/or name change 5135510 APPROVED