TUBB7P (tubulin beta 7 pseudogene) - Rat Genome Database

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Gene: TUBB7P (tubulin beta 7 pseudogene) Homo sapiens
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Symbol: TUBB7P
Name: tubulin beta 7 pseudogene
RGD ID: 1344969
HGNC Page HGNC:12413
Description: INTERACTS WITH aristolochic acid A; copper atom; copper(0)
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: putative tubulin beta-4q chain; TUBB4Q; tubulin, beta polypeptide 4, member Q
Related Functional Gene: TUBB8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384189,982,335 - 189,984,929 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4189,982,523 - 189,984,871 (-)EnsemblGRCh38hg38GRCh38
GRCh374190,903,490 - 190,906,084 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364191,140,672 - 191,143,020 (-)NCBINCBI36Build 36hg18NCBI36
Build 344191,278,826 - 191,281,173NCBI
Celera4188,198,204 - 188,200,552 (-)NCBICelera
Cytogenetic Map4q35.2NCBI
HuRef4186,645,359 - 186,647,193 (-)NCBIHuRef
CHM1_14190,888,217 - 190,890,751 (-)NCBICHM1_1
T2T-CHM13v2.04193,350,543 - 193,353,137 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10512680   PMID:10828619   PMID:11731935   PMID:12477932   PMID:17266347   PMID:22119785   PMID:22939629   PMID:23246001   PMID:23463506   PMID:24244333   PMID:26186194   PMID:28514442  
PMID:31091453   PMID:33961781  


Genomics

Variants

.
Variants in TUBB7P
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:219
Count of miRNA genes:205
Interacting mature miRNAs:217
Transcripts:ENST00000428444
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292972PRSTS190_HProstate tumor susceptibility QTL 190 (human)4.130.0018Prostate tumor susceptibility4175186665190214555Human

Markers in Region
RH80853  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374190,903,535 - 190,903,688UniSTSGRCh37
Build 364191,140,529 - 191,140,682RGDNCBI36
Celera4188,198,057 - 188,198,210RGD
Cytogenetic Map4q35UniSTS
RH93426  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4q35UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map10p15.3UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
303 982 790 435 2875 963 1238 1 229 720 121 1022 2374 2002 19 2025 487 1239 935 112

Sequence


Ensembl Acc Id: ENST00000428444
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4189,982,523 - 189,984,871 (-)Ensembl
RefSeq Acc Id: NM_020040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh374190,903,678 - 190,906,026 (-)RGD
Build 364191,140,672 - 191,143,020 (-)NCBI Archive
Protein Sequences
GenBank Protein AAB48456 (Get FASTA)   NCBI Sequence Viewer  
  EAX04599 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
COSMIC TUBB7P COSMIC
Ensembl Genes ENSG00000251297 Ensembl, ENTREZGENE
GTEx ENSG00000251297 GTEx
HGNC ID HGNC:12413 ENTREZGENE
Human Proteome Map TUBB7P Human Proteome Map
NCBI Gene 56604 ENTREZGENE
PharmGKB PA37076 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 TUBB7P  tubulin beta 7 pseudogene    tubulin, beta 7, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-10-18 TUBB7P  tubulin, beta 7, pseudogene  TUBB4Q  tubulin, beta polypeptide 4, member Q, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 TUBB4Q  tubulin, beta polypeptide 4, member Q, pseudogene  TUBB4Q  tubulin, beta polypeptide 4, member Q  Symbol and/or name change 5135510 APPROVED