MICC (MHC class I polypeptide-related sequence C (pseudogene)) - Rat Genome Database

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Gene: MICC (MHC class I polypeptide-related sequence C (pseudogene)) Homo sapiens
Analyze
Symbol: MICC
Name: MHC class I polypeptide-related sequence C (pseudogene)
RGD ID: 1344876
HGNC Page HGNC:7092
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: PERB11.3
Related Functional Gene: MICB  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: The MICC pseudogene is located on the (+) strand of human chr6. A processing error in 2004 caused GeneID:221549 to be erroneously annotated on the (-) strand. To correct this error, GeneID:221549 was deleted, and the pseudogene is now represented by GeneID:100129192. [13 Feb 2013]
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,414,711 - 30,416,636 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,414,715 - 30,419,319 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,382,488 - 30,384,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,472,720 - 30,495,120 (+)NCBINCBI36Build 36hg18NCBI36
Celera631,962,932 - 31,982,938 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef630,179,912 - 30,184,965 (+)NCBIHuRef
CHM1_1630,384,568 - 30,389,622 (+)NCBICHM1_1
T2T-CHM13v2.0630,278,923 - 30,280,848 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8022771   PMID:21912425  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:167
Interacting mature miRNAs:168
Transcripts:ENST00000445710
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH35725  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,363,786 - 30,363,939UniSTSGRCh37
Build 36630,471,765 - 30,471,918RGDNCBI36
Celera631,961,977 - 31,962,130RGD
Cytogenetic Map6p22.1UniSTS
HuRef630,161,913 - 30,162,066UniSTS
Whitehead-YAC Contig Map6 UniSTS
D6S2925  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,428,237 - 31,428,470UniSTSGRCh37
GRCh37630,372,076 - 30,372,250UniSTSGRCh37
Build 36630,480,055 - 30,480,229RGDNCBI36
Celera631,970,268 - 31,970,442RGD
Celera633,026,174 - 33,026,400UniSTS
Cytogenetic Map6p22.1UniSTS
HuRef630,170,204 - 30,170,378UniSTS
HuRef631,215,062 - 31,215,299UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 4 2 1 4 1 1
Below cutoff 419 751 295 77 486 47 855 296 452 34 246 395 34 273 501

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000445710
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl630,414,715 - 30,419,319 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MICC COSMIC
Ensembl Genes ENSG00000226577 Ensembl
GTEx ENSG00000226577 GTEx
HGNC ID HGNC:7092 ENTREZGENE
Human Proteome Map MICC Human Proteome Map
NCBI Gene 100129192 ENTREZGENE
PharmGKB PA30813 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 MICC  MHC class I polypeptide-related sequence C (pseudogene)  MICC  MHC class I polypeptide-related sequence C  Symbol and/or name change 5135510 APPROVED