MKRN7P (makorin ring finger protein 7, pseudogene) - Rat Genome Database

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Gene: MKRN7P (makorin ring finger protein 7, pseudogene) Homo sapiens
Analyze
Symbol: MKRN7P
Name: makorin ring finger protein 7, pseudogene
RGD ID: 1344748
HGNC Page HGNC:7119
Description: INTERACTS WITH bisphenol A; cyclosporin A; fulvestrant
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: dJ981L23.2; MKRNP3; ZNF127L5
Related Functional Gene: MKRN1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382046,463,660 - 46,465,292 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2046,463,900 - 46,465,270 (-)EnsemblGRCh38hg38GRCh38
GRCh372045,092,299 - 45,093,931 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,525,839 - 44,527,300 (-)NCBINCBI36Build 36hg18NCBI36
Celera2041,803,949 - 41,805,210 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,833,205 - 41,834,837 (-)NCBIHuRef
CHM1_12044,994,905 - 44,996,537 (-)NCBICHM1_1
T2T-CHM13v2.02048,199,760 - 48,201,396 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:8889548  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:271
Count of miRNA genes:258
Interacting mature miRNAs:270
Transcripts:ENST00000433469
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2 2 1
Low 138 49 1001 100 106 14 455 47 2130 80 1043 773 86 41 305 1
Below cutoff 1894 1827 501 323 668 249 2748 1535 1516 215 255 592 75 849 1773 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000433469
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2046,463,900 - 46,465,270 (-)Ensembl
RefSeq Acc Id: ENST00000640520
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2046,463,719 - 46,477,232 (-)Ensembl
RefSeq Acc Id: NR_026640
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382046,463,660 - 46,465,292 (-)NCBI
GRCh372045,092,299 - 45,093,931 (-)RGD
Celera2041,803,715 - 41,805,347 (-)RGD
HuRef2041,833,205 - 41,834,837 (-)RGD
CHM1_12044,994,905 - 44,996,537 (-)NCBI
T2T-CHM13v2.02048,199,760 - 48,201,396 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC MKRN7P COSMIC
Ensembl Genes ENSG00000225849 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000433469 ENTREZGENE
GTEx ENSG00000225849 GTEx
HGNC ID HGNC:7119 ENTREZGENE
Human Proteome Map MKRN7P Human Proteome Map
NCBI Gene 7686 ENTREZGENE
PharmGKB PA30838 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 MKRN7P  makorin ring finger protein 7, pseudogene  MKRNP3  makorin ring finger protein pseudogene 3  Symbol and/or name change 5135510 APPROVED