OR11J5P (olfactory receptor family 11 subfamily J member 5 pseudogene) - Rat Genome Database

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Gene: OR11J5P (olfactory receptor family 11 subfamily J member 5 pseudogene) Homo sapiens
Analyze
Symbol: OR11J5P
Name: olfactory receptor family 11 subfamily J member 5 pseudogene
RGD ID: 1344426
HGNC Page HGNC:31238
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: OR11H6  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381520,969,250 - 20,970,209 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1520,969,282 - 20,970,215 (-)EnsemblGRCh38hg38GRCh38
GRCh371521,174,579 - 21,175,538 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361519,439,138 - 19,440,297 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map15q11.2NCBI
HuRef15670,406 - 671,365 (-)NCBIHuRef
CHM1_11521,175,365 - 21,176,324 (-)NCBICHM1_1
T2T-CHM13v2.01519,697,951 - 19,698,910 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:51
Interacting mature miRNAs:51
Transcripts:ENST00000556889
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 3
Below cutoff 10 9 13 6 17 5 24 10 33 9 164 13 1 6 16

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000556889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1520,969,282 - 20,970,215 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC OR11J5P COSMIC
Ensembl Genes ENSG00000258494 Ensembl, ENTREZGENE
GTEx ENSG00000258494 GTEx
HGNC ID HGNC:31238 ENTREZGENE
Human Proteome Map OR11J5P Human Proteome Map
NCBI Gene 403226 ENTREZGENE
PharmGKB PA134875267 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR11J5P  olfactory receptor family 11 subfamily J member 5 pseudogene  OR11J5P  olfactory receptor, family 11, subfamily J, member 5 pseudogene  Symbol and/or name change 5135510 APPROVED