Pus1 (pseudouridine synthase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pus1 (pseudouridine synthase 1) Mus musculus
Analyze
Symbol: Pus1
Name: pseudouridine synthase 1
RGD ID: 1323554
MGI Page MGI
Description: Enables chromatin binding activity; nuclear receptor coactivator activity; and tRNA pseudouridine synthase activity. Involved in tRNA pseudouridine synthesis. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleolus. Part of transcription regulator complex. Used to study myopathy, lactic acidosis, and sideroblastic anemia. Human ortholog(s) of this gene implicated in myopathy, lactic acidosis, and sideroblastic anemia 1. Orthologous to human PUS1 (pseudouridine synthase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A730013B20Rik; MPU; MPUS1; mPus1p; pseudouridylate synthase 1 homolog; tRNA pseudouridine synthase 1; tRNA pseudouridine synthase A; tRNA pseudouridine synthase A, mitochondrial; tRNA pseudouridine(38-40) synthase; tRNA pseudouridylate synthase I; tRNA-uridine isomerase I
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,921,533 - 110,928,523 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,921,533 - 110,928,525 (-)EnsemblGRCm39 Ensembl
GRCm385110,773,667 - 110,780,649 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,773,667 - 110,780,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv375111,202,686 - 111,209,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365111,013,969 - 111,020,917 (-)NCBIMGSCv36mm8
Celera5107,905,692 - 107,912,636 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzo[e]pyrene  (ISO)
benzoates  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
cisplatin  (EXP)
clofibric acid  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
diethyl maleate  (EXP)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
ivermectin  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentachlorophenol  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
resveratrol  (EXP)
rotenone  (ISO)
silicon dioxide  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10094309   PMID:10349636   PMID:10512203   PMID:11027153   PMID:11042159   PMID:11076861   PMID:11085940   PMID:11217851   PMID:12477932   PMID:12904583   PMID:14610273  
PMID:15327771   PMID:15489334   PMID:15840001   PMID:16141072   PMID:16141073   PMID:17170069   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:27197761   PMID:32325033  


Genomics

Comparative Map Data
Pus1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,921,533 - 110,928,523 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,921,533 - 110,928,525 (-)EnsemblGRCm39 Ensembl
GRCm385110,773,667 - 110,780,649 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,773,667 - 110,780,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv375111,202,686 - 111,209,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365111,013,969 - 111,020,917 (-)NCBIMGSCv36mm8
Celera5107,905,692 - 107,912,636 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.7NCBI
PUS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812131,929,276 - 131,945,896 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12131,929,200 - 131,945,896 (+)EnsemblGRCh38hg38GRCh38
GRCh3712132,413,821 - 132,430,441 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612130,979,742 - 130,994,357 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412131,080,271 - 131,094,632NCBI
Celera12132,032,281 - 132,046,846 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12129,299,517 - 129,314,189 (+)NCBIHuRef
CHM1_112132,234,704 - 132,249,366 (+)NCBICHM1_1
T2T-CHM13v2.012131,977,320 - 131,993,946 (+)NCBIT2T-CHM13v2.0
Pus1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,539,659 - 51,548,975 (+)NCBIGRCr8
mRatBN7.21245,880,364 - 45,889,196 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,880,440 - 45,889,196 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1247,055,896 - 47,064,646 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,661,351 - 47,670,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,721,879 - 46,730,643 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,936,721 - 51,945,930 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,937,175 - 51,945,928 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01253,675,092 - 53,684,281 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41246,024,978 - 46,033,733 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11245,889,104 - 45,897,858 (+)NCBI
Celera1247,439,849 - 47,448,604 (+)NCBICelera
Cytogenetic Map12q16NCBI
Pus1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955482748,394 - 756,747 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955482749,265 - 756,964 (-)NCBIChiLan1.0ChiLan1.0
PUS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210140,020,955 - 140,036,202 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112140,017,411 - 140,032,719 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012129,583,040 - 129,598,328 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112134,011,927 - 134,027,160 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12134,011,932 - 134,027,160 (+)Ensemblpanpan1.1panPan2
PUS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126955,413 - 965,561 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26955,462 - 966,155 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26999,050 - 1,009,405 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0261,017,083 - 1,027,425 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl261,017,131 - 1,027,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126954,195 - 964,550 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0261,050,823 - 1,061,179 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026973,978 - 984,323 (-)NCBIUU_Cfam_GSD_1.0
Pus1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118122,521,435 - 122,532,091 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366602,192,651 - 2,199,602 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366602,192,583 - 2,199,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PUS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1423,400,584 - 23,418,132 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11423,400,575 - 23,418,470 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21424,852,142 - 24,870,013 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PUS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111127,307,955 - 127,327,596 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11127,308,053 - 127,328,301 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037117,632,671 - 117,650,593 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pus1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474727,698,816 - 27,709,514 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474727,699,397 - 27,707,592 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pus1
169 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1132
Count of miRNA genes:277
Interacting mature miRNAs:319
Transcripts:ENSMUST00000031481, ENSMUST00000031483, ENSMUST00000086643, ENSMUST00000112426, ENSMUST00000136483, ENSMUST00000149208, ENSMUST00000170468
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
1301877Bbaa3_mB.burgdorferi-associated arthritis 3 (mouse)Not determined599455285112465722Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
1357901Mdmsc2_mmodifier of muscularity 2 (mouse)Not determined5107561006112434786Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
4141652Mrdq2_mmodifier of retinal degeneration QTL 2 (mouse)Not determined110253106118093673Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001025562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF116237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF269250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU515425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY174054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY331510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB059120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF618003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000031481   ⟹   ENSMUSP00000031481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,921,533 - 110,928,525 (-)Ensembl
GRCm38.p6 Ensembl5110,773,667 - 110,780,659 (-)Ensembl
RefSeq Acc Id: ENSMUST00000031483   ⟹   ENSMUSP00000031483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,921,533 - 110,928,462 (-)Ensembl
GRCm38.p6 Ensembl5110,773,667 - 110,780,596 (-)Ensembl
RefSeq Acc Id: ENSMUST00000086643   ⟹   ENSMUSP00000083844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,921,533 - 110,928,462 (-)Ensembl
GRCm38.p6 Ensembl5110,773,667 - 110,780,596 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112426   ⟹   ENSMUSP00000108045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,921,533 - 110,927,833 (-)Ensembl
GRCm38.p6 Ensembl5110,773,667 - 110,779,967 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136483   ⟹   ENSMUSP00000115143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,923,402 - 110,928,012 (-)Ensembl
GRCm38.p6 Ensembl5110,775,536 - 110,780,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149208   ⟹   ENSMUSP00000115468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,923,411 - 110,928,457 (-)Ensembl
GRCm38.p6 Ensembl5110,775,545 - 110,780,591 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170468   ⟹   ENSMUSP00000130814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,921,534 - 110,928,481 (-)Ensembl
GRCm38.p6 Ensembl5110,773,668 - 110,780,615 (-)Ensembl
RefSeq Acc Id: NM_001025561   ⟹   NP_001020732
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,462 (-)NCBI
GRCm385110,773,667 - 110,780,596 (-)NCBI
MGSCv375111,202,686 - 111,209,634 (-)RGD
Celera5107,905,692 - 107,912,636 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001025562   ⟹   NP_001020733
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,481 (-)NCBI
GRCm385110,773,667 - 110,780,615 (-)NCBI
MGSCv375111,202,686 - 111,209,634 (-)RGD
Celera5107,905,692 - 107,912,636 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001347390   ⟹   NP_001334319
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,481 (-)NCBI
GRCm385110,773,667 - 110,780,615 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359218   ⟹   NP_001346147
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,481 (-)NCBI
GRCm385110,773,667 - 110,780,615 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359219   ⟹   NP_001346148
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,481 (-)NCBI
GRCm385110,773,667 - 110,780,615 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019700   ⟹   NP_062674
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,462 (-)NCBI
GRCm385110,773,667 - 110,780,596 (-)NCBI
MGSCv375111,202,686 - 111,209,634 (-)RGD
Celera5107,905,692 - 107,912,636 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535148   ⟹   XP_006535211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,495 (-)NCBI
GRCm385110,773,667 - 110,780,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321014   ⟹   XP_017176503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,500 (-)NCBI
GRCm385110,773,667 - 110,780,634 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321015   ⟹   XP_017176504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,517 (-)NCBI
GRCm385110,773,667 - 110,780,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165331   ⟹   XP_036021224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,497 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165332   ⟹   XP_036021225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165333   ⟹   XP_036021226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,921,533 - 110,928,523 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001020732 (Get FASTA)   NCBI Sequence Viewer  
  NP_001020733 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334319 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346147 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346148 (Get FASTA)   NCBI Sequence Viewer  
  NP_062674 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535211 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176503 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176504 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021224 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021225 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021226 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD21041 (Get FASTA)   NCBI Sequence Viewer  
  AAG35307 (Get FASTA)   NCBI Sequence Viewer  
  AAG35308 (Get FASTA)   NCBI Sequence Viewer  
  AAH34359 (Get FASTA)   NCBI Sequence Viewer  
  BAA95047 (Get FASTA)   NCBI Sequence Viewer  
  BAC40817 (Get FASTA)   NCBI Sequence Viewer  
  BAE23701 (Get FASTA)   NCBI Sequence Viewer  
  BAE36440 (Get FASTA)   NCBI Sequence Viewer  
  EDL20003 (Get FASTA)   NCBI Sequence Viewer  
  EDL20004 (Get FASTA)   NCBI Sequence Viewer  
  EDL20005 (Get FASTA)   NCBI Sequence Viewer  
  EDL20006 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000031481
  ENSMUSP00000031481.7
  ENSMUSP00000031483
  ENSMUSP00000031483.9
  ENSMUSP00000083844
  ENSMUSP00000083844.6
  ENSMUSP00000108045
  ENSMUSP00000108045.2
  ENSMUSP00000115143.2
  ENSMUSP00000115468.2
  ENSMUSP00000130814
  ENSMUSP00000130814.2
GenBank Protein Q9WU56 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020733   ⟸   NM_001025562
- Peptide Label: isoform 3
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_062674   ⟸   NM_019700
- Peptide Label: isoform 2
- UniProtKB: Q9EQD1 (UniProtKB/Swiss-Prot),   Q8VDQ3 (UniProtKB/Swiss-Prot),   Q8C250 (UniProtKB/Swiss-Prot),   Q791J1 (UniProtKB/Swiss-Prot),   Q3UUC6 (UniProtKB/Swiss-Prot),   Q9JJE5 (UniProtKB/Swiss-Prot),   Q9WU56 (UniProtKB/Swiss-Prot),   Q3TT85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001020732   ⟸   NM_001025561
- Peptide Label: isoform 1
- UniProtKB: H7BX59 (UniProtKB/TrEMBL),   Q3TT85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535211   ⟸   XM_006535148
- Peptide Label: isoform X3
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176504   ⟸   XM_017321015
- Peptide Label: isoform X2
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176503   ⟸   XM_017321014
- Peptide Label: isoform X2
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001334319   ⟸   NM_001347390
- Peptide Label: isoform 4
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346147   ⟸   NM_001359218
- Peptide Label: isoform 5
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346148   ⟸   NM_001359219
- Peptide Label: isoform 3
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000130814   ⟸   ENSMUST00000170468
RefSeq Acc Id: ENSMUSP00000083844   ⟸   ENSMUST00000086643
RefSeq Acc Id: ENSMUSP00000031481   ⟸   ENSMUST00000031481
RefSeq Acc Id: ENSMUSP00000031483   ⟸   ENSMUST00000031483
RefSeq Acc Id: ENSMUSP00000108045   ⟸   ENSMUST00000112426
RefSeq Acc Id: ENSMUSP00000115468   ⟸   ENSMUST00000149208
RefSeq Acc Id: ENSMUSP00000115143   ⟸   ENSMUST00000136483
RefSeq Acc Id: XP_036021226   ⟸   XM_036165333
- Peptide Label: isoform X1
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036021225   ⟸   XM_036165332
- Peptide Label: isoform X1
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036021224   ⟸   XM_036165331
- Peptide Label: isoform X1
- UniProtKB: Q3TT85 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WU56-F1-model_v2 AlphaFold Q9WU56 1-423 view protein structure

Promoters
RGD ID:6887560
Promoter ID:EPDNEW_M7230
Type:single initiation site
Name:Pus1_2
Description:Mus musculus pseudouridine synthase 1 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7231  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385110,779,939 - 110,779,999EPDNEW
RGD ID:6887562
Promoter ID:EPDNEW_M7231
Type:initiation region
Name:Pus1_1
Description:Mus musculus pseudouridine synthase 1 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7230  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385110,780,615 - 110,780,675EPDNEW
RGD ID:6838161
Promoter ID:MM_KWN:43390
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000031481,   ENSMUST00000100906,   ENSMUST00000112426,   NM_001025562,   NM_019700,   OTTMUST00000057852,   OTTMUST00000057855,   OTTMUST00000057856
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365111,208,786 - 111,210,207 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1929237 AgrOrtholog
Ensembl Genes ENSMUSG00000029507 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031481 ENTREZGENE
  ENSMUST00000031481.13 UniProtKB/Swiss-Prot
  ENSMUST00000031483 ENTREZGENE
  ENSMUST00000031483.15 UniProtKB/Swiss-Prot
  ENSMUST00000086643 ENTREZGENE
  ENSMUST00000086643.12 UniProtKB/TrEMBL
  ENSMUST00000112426 ENTREZGENE
  ENSMUST00000112426.8 UniProtKB/Swiss-Prot
  ENSMUST00000136483.8 UniProtKB/TrEMBL
  ENSMUST00000149208.2 UniProtKB/TrEMBL
  ENSMUST00000170468 ENTREZGENE
  ENSMUST00000170468.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.580 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PsdUridine_synth_cat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PsdUridine_synth_TruA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PsdUridine_synth_TruA_a/b_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PsdUridine_synth_TruA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PUS1/PUS2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TruA/RsuA/RluB/E/F_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56361 UniProtKB/Swiss-Prot
MGD MGI:1929237 ENTREZGENE
NCBI Gene 56361 ENTREZGENE
PANTHER PTHR11142 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRNA PSEUDOURIDINE SYNTHASE A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PseudoU_synth_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pus1 PhenoGen
Superfamily-SCOP SSF55120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YWU8_MOUSE UniProtKB/TrEMBL
  D3Z092_MOUSE UniProtKB/TrEMBL
  H7BX59 ENTREZGENE, UniProtKB/TrEMBL
  Q3TT85 ENTREZGENE, UniProtKB/TrEMBL
  Q3UUC6 ENTREZGENE
  Q791J1 ENTREZGENE
  Q8C250 ENTREZGENE
  Q8VDQ3 ENTREZGENE
  Q9EQD1 ENTREZGENE
  Q9JJE5 ENTREZGENE
  Q9WU56 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UUC6 UniProtKB/Swiss-Prot
  Q791J1 UniProtKB/Swiss-Prot
  Q8C250 UniProtKB/Swiss-Prot
  Q8VDQ3 UniProtKB/Swiss-Prot
  Q9EQD1 UniProtKB/Swiss-Prot
  Q9JJE5 UniProtKB/Swiss-Prot