CKAP2 (cytoskeleton associated protein 2) - Rat Genome Database

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Gene: CKAP2 (cytoskeleton associated protein 2) Homo sapiens
Analyze
Symbol: CKAP2
Name: cytoskeleton associated protein 2
RGD ID: 1323189
HGNC Page HGNC:1990
Description: Acts upstream of or within mitotic cytokinesis and positive regulation of transcription by RNA polymerase II. Located in centrosome and mitotic spindle.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CTCL tumor antigen se20-10; cytoskeleton-associated protein 2; DKFZp686L1238; FLJ10749; LB1; se20-10; TMAP; tumor- and microtubule-associated protein; tumor-associated microtubule-associated protein
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Related Pseudogenes: CKAP2P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381352,455,478 - 52,476,627 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1352,455,429 - 52,476,628 (+)EnsemblGRCh38hg38GRCh38
GRCh371353,029,613 - 53,050,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361351,927,496 - 51,948,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 341351,927,596 - 51,948,758NCBI
Celera1333,946,444 - 33,967,702 (-)NCBICelera
Cytogenetic Map13q14.3NCBI
HuRef1333,768,646 - 33,789,294 (+)NCBIHuRef
CHM1_11352,997,571 - 53,018,839 (+)NCBICHM1_1
T2T-CHM13v2.01351,670,301 - 51,692,112 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-methylcholine  (EXP)
2-palmitoylglycerol  (EXP)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (EXP)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP)
antirheumatic drug  (EXP)
aristolochic acid A  (EXP)
arsenous acid  (ISO)
azathioprine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (EXP)
beta-D-glucosamine  (ISO)
beta-lapachone  (EXP)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
calcitriol  (EXP)
carbon nanotube  (ISO)
cefaloridine  (ISO)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
CU-O LINKAGE  (EXP)
Cuprizon  (ISO)
cyclosporin A  (EXP)
D-glucose  (ISO)
deoxynivalenol  (EXP)
diallyl trisulfide  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (EXP)
dioxygen  (ISO)
diquat  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
Echimidine  (ISO)
elemental selenium  (EXP)
endosulfan  (ISO)
enzyme inhibitor  (EXP)
ethyl methanesulfonate  (EXP)
flutamide  (ISO)
folic acid  (ISO)
FR900359  (EXP)
fructose  (ISO)
furan  (ISO)
gentamycin  (ISO)
glucose  (ISO)
glycidol  (ISO)
glyphosate  (ISO)
Heliotrine  (ISO)
hydrogen peroxide  (EXP)
L-methionine  (ISO)
leflunomide  (EXP)
lidocaine  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methapyrilene  (EXP,ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
mitomycin C  (ISO)
N-nitrosodiethylamine  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenformin  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (EXP)
PhIP  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (EXP)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (EXP)
selenium atom  (EXP)
senecionine  (ISO)
Senkirkine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
sunitinib  (EXP)
tacrolimus hydrate  (ISO)
testosterone  (EXP,ISO)
testosterone enanthate  (EXP)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thioacetamide  (ISO)
thiram  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP,ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
Triptolide  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP)
vincaleukoblastine  (EXP)
vitamin E  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7566098   PMID:9771967   PMID:11149944   PMID:11230166   PMID:11234418   PMID:12477932   PMID:12500535   PMID:12942315   PMID:14702039   PMID:15057823   PMID:15324660   PMID:15489334  
PMID:16061649   PMID:16565220   PMID:16876122   PMID:17339342   PMID:17376772   PMID:18029348   PMID:18779650   PMID:19369249   PMID:19641375   PMID:20458174   PMID:20888340   PMID:21328343  
PMID:21368580   PMID:21399614   PMID:21873635   PMID:22020800   PMID:22465120   PMID:23737987   PMID:24238125   PMID:24280143   PMID:24613305   PMID:24797263   PMID:24887265   PMID:25281560  
PMID:26186194   PMID:26496610   PMID:26638075   PMID:26693507   PMID:26752685   PMID:27055594   PMID:27503909   PMID:27880917   PMID:28242625   PMID:28514442   PMID:28522860   PMID:28611215  
PMID:28718761   PMID:28933561   PMID:29089450   PMID:29509190   PMID:29511261   PMID:29513927   PMID:29778605   PMID:30066946   PMID:30119212   PMID:30209976   PMID:30561431   PMID:30804502  
PMID:31091453   PMID:31180492   PMID:31527615   PMID:31586073   PMID:32129710   PMID:32322062   PMID:32707033   PMID:32807901   PMID:32877691   PMID:33306668   PMID:33916271   PMID:33957083  
PMID:33961781   PMID:34079125   PMID:34133714   PMID:34216644   PMID:34349018   PMID:34596006   PMID:34672954   PMID:34732716   PMID:35013218   PMID:35241646   PMID:35271311   PMID:35696571  
PMID:35853854   PMID:35905213   PMID:35914814   PMID:35915203   PMID:35944360   PMID:36114006   PMID:36215168   PMID:36526897   PMID:36931259   PMID:37151849   PMID:37314216   PMID:37827155  


Genomics

Comparative Map Data
CKAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381352,455,478 - 52,476,627 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1352,455,429 - 52,476,628 (+)EnsemblGRCh38hg38GRCh38
GRCh371353,029,613 - 53,050,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361351,927,496 - 51,948,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 341351,927,596 - 51,948,758NCBI
Celera1333,946,444 - 33,967,702 (-)NCBICelera
Cytogenetic Map13q14.3NCBI
HuRef1333,768,646 - 33,789,294 (+)NCBIHuRef
CHM1_11352,997,571 - 53,018,839 (+)NCBICHM1_1
T2T-CHM13v2.01351,670,301 - 51,692,112 (+)NCBIT2T-CHM13v2.0
Ckap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39822,658,168 - 22,675,835 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl822,658,176 - 22,675,835 (-)EnsemblGRCm39 Ensembl
GRCm38822,168,149 - 22,185,819 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl822,168,160 - 22,185,819 (-)EnsemblGRCm38mm10GRCm38
MGSCv37823,278,624 - 23,296,291 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36823,633,994 - 23,651,364 (-)NCBIMGSCv36mm8
Celera823,660,804 - 23,678,492 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map811.13NCBI
Ckap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81676,542,114 - 76,567,297 (+)NCBIGRCr8
mRatBN7.21669,839,668 - 69,864,852 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1669,839,630 - 69,864,913 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1675,113,349 - 75,138,530 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01678,552,184 - 78,576,964 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01673,801,472 - 73,826,252 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01674,752,655 - 74,779,184 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1674,752,655 - 74,779,184 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01674,383,677 - 74,410,206 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41674,492,221 - 74,518,743 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11674,492,485 - 74,519,006 (+)NCBI
Celera1667,729,052 - 67,749,485 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Ckap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554315,418,103 - 5,427,463 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554315,416,596 - 5,429,465 (-)NCBIChiLan1.0ChiLan1.0
CKAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21453,674,979 - 53,699,456 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11352,319,243 - 52,343,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01333,371,744 - 33,393,483 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11352,378,273 - 52,399,604 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1352,378,278 - 52,399,608 (+)Ensemblpanpan1.1panPan2
CKAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.125134,914 - 190,810 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl25135,586 - 150,835 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha25254,102 - 309,766 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.025237,711 - 293,381 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl25237,629 - 253,620 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.125118,567 - 174,268 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.025133,250 - 188,931 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.025201,092 - 256,747 (-)NCBIUU_Cfam_GSD_1.0
Ckap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945161,386,331 - 161,397,634 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365654,871,414 - 4,881,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365654,872,142 - 4,896,449 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CKAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1115,751,808 - 15,768,046 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11115,751,717 - 15,767,068 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21116,074,832 - 16,090,294 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CKAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1330,086,068 - 30,107,491 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl330,086,073 - 30,107,463 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605713,705,765 - 13,727,131 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in CKAP2
47 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 13q12.3-31.3(chr13:31363472-90575292)x3 copy number gain See cases [RCV000050293] Chr13:31363472..90575292 [GRCh38]
Chr13:31937609..91227546 [GRCh37]
Chr13:30835609..90025547 [NCBI36]
Chr13:13q12.3-31.3		 pathogenic
GRCh38/hg38 13q14.12-31.3(chr13:44967523-92738168)x1 copy number loss See cases [RCV000050891] Chr13:44967523..92738168 [GRCh38]
Chr13:45541658..93390421 [GRCh37]
Chr13:44439658..92188422 [NCBI36]
Chr13:13q14.12-31.3		 pathogenic
GRCh38/hg38 13q12.3-21.33(chr13:30697728-69471973)x1 copy number loss See cases [RCV000051373] Chr13:30697728..69471973 [GRCh38]
Chr13:31271865..70046105 [GRCh37]
Chr13:30169865..68944106 [NCBI36]
Chr13:13q12.3-21.33		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:18946182-114304628)x3 copy number gain See cases [RCV000053726] Chr13:18946182..114304628 [GRCh38]
Chr13:19520322..115070103 [GRCh37]
Chr13:18418322..114088205 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000053731] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q12.3-31.1(chr13:30318913-83610426)x3 copy number gain See cases [RCV000053737] Chr13:30318913..83610426 [GRCh38]
Chr13:30893050..84184561 [GRCh37]
Chr13:29791050..83082562 [NCBI36]
Chr13:13q12.3-31.1		 pathogenic
GRCh38/hg38 13q11-34(chr13:18565048-114327173)x3 copy number gain See cases [RCV000053719] Chr13:18565048..114327173 [GRCh38]
Chr13:19139188..115085141 [GRCh37]
Chr13:18037188..114110750 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q11-34(chr13:18850545-114327173)x3 copy number gain See cases [RCV000053723] Chr13:18850545..114327173 [GRCh38]
Chr13:19296527..115085141 [GRCh37]
Chr13:18194527..114110750 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q13.2-34(chr13:33528097-114327173)x3 copy number gain See cases [RCV000053759] Chr13:33528097..114327173 [GRCh38]
Chr13:34102234..115085141 [GRCh37]
Chr13:33000234..114110750 [NCBI36]
Chr13:13q13.2-34		 pathogenic
GRCh38/hg38 13q14.11-34(chr13:43219125-114327314)x3 copy number gain See cases [RCV000053762] Chr13:43219125..114327314 [GRCh38]
Chr13:43793261..115085141 [GRCh37]
Chr13:42691261..114110891 [NCBI36]
Chr13:13q14.11-34		 pathogenic
GRCh38/hg38 13q14.11-34(chr13:44164751-114327173)x3 copy number gain See cases [RCV000053764] Chr13:44164751..114327173 [GRCh38]
Chr13:44738887..115085141 [GRCh37]
Chr13:43636887..114110750 [NCBI36]
Chr13:13q14.11-34		 pathogenic
GRCh38/hg38 13q14.12-34(chr13:44733046-114327173)x3 copy number gain See cases [RCV000053767] Chr13:44733046..114327173 [GRCh38]
Chr13:45307182..115085141 [GRCh37]
Chr13:44205182..114110750 [NCBI36]
Chr13:13q14.12-34		 pathogenic
NM_001098525.2(CKAP2):c.1364C>T (p.Pro455Leu) single nucleotide variant Malignant melanoma [RCV000062687] Chr13:52465350 [GRCh38]
Chr13:53039485 [GRCh37]
Chr13:51937486 [NCBI36]
Chr13:13q14.3		 not provided
GRCh38/hg38 13q13.3-21.31(chr13:36777318-62955876)x1 copy number loss See cases [RCV000133696] Chr13:36777318..62955876 [GRCh38]
Chr13:37351455..63530009 [GRCh37]
Chr13:36249455..62428010 [NCBI36]
Chr13:13q13.3-21.31		 pathogenic
GRCh38/hg38 13q14.3(chr13:52381559-54493354)x3 copy number gain See cases [RCV000134421] Chr13:52381559..54493354 [GRCh38]
Chr13:52955694..55067489 [GRCh37]
Chr13:51853695..53965490 [NCBI36]
Chr13:13q14.3		 uncertain significance
GRCh38/hg38 13q14.11-31.1(chr13:41288493-85137552)x3 copy number gain See cases [RCV000133944] Chr13:41288493..85137552 [GRCh38]
Chr13:41862629..85711687 [GRCh37]
Chr13:40760629..84609688 [NCBI36]
Chr13:13q14.11-31.1		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114298614)x3 copy number gain See cases [RCV000134104] Chr13:19833130..114298614 [GRCh38]
Chr13:20407270..115064089 [GRCh37]
Chr13:19305270..114082191 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q12.3-21.32(chr13:31553608-65470367)x3 copy number gain See cases [RCV000135808] Chr13:31553608..65470367 [GRCh38]
Chr13:32127745..66044499 [GRCh37]
Chr13:31025745..64942500 [NCBI36]
Chr13:13q12.3-21.32		 pathogenic
GRCh38/hg38 13q11-34(chr13:18445862-114327173)x1 copy number loss See cases [RCV000135610] Chr13:18445862..114327173 [GRCh38]
Chr13:19020001..115085141 [GRCh37]
Chr13:10098739..114110750 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q14.11-31.1(chr13:41143820-85137552)x1 copy number loss See cases [RCV000136526] Chr13:41143820..85137552 [GRCh38]
Chr13:41717956..85711687 [GRCh37]
Chr13:40615956..84609688 [NCBI36]
Chr13:13q14.11-31.1		 pathogenic
GRCh38/hg38 13q14.2-31.1(chr13:47117587-84300935)x1 copy number loss See cases [RCV000136647] Chr13:47117587..84300935 [GRCh38]
Chr13:47691722..84875070 [GRCh37]
Chr13:46589723..83773071 [NCBI36]
Chr13:13q14.2-31.1		 pathogenic
GRCh38/hg38 13q14.11-34(chr13:40942298-114340331)x1 copy number loss See cases [RCV000137893] Chr13:40942298..114340331 [GRCh38]
Chr13:41516434..115085141 [GRCh37]
Chr13:40414434..114123908 [NCBI36]
Chr13:13q14.11-34		 pathogenic
GRCh38/hg38 13q13.1-31.1(chr13:32531486-86757044)x3 copy number gain See cases [RCV000138339] Chr13:32531486..86757044 [GRCh38]
Chr13:33105623..87409299 [GRCh37]
Chr13:32003623..86207300 [NCBI36]
Chr13:13q13.1-31.1		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114327106)x3 copy number gain See cases [RCV000139078] Chr13:19833130..114327106 [GRCh38]
Chr13:20407270..115085141 [GRCh37]
Chr13:19305270..114110683 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q11-34(chr13:18456040-114340285)x3 copy number gain See cases [RCV000140004] Chr13:18456040..114340285 [GRCh38]
Chr13:19030180..115105760 [GRCh37]
Chr13:17928180..114123862 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q13.3-21.32(chr13:37864226-67963788)x1 copy number loss See cases [RCV000140744] Chr13:37864226..67963788 [GRCh38]
Chr13:38438363..68537920 [GRCh37]
Chr13:37336363..67435921 [NCBI36]
Chr13:13q13.3-21.32		 pathogenic
GRCh38/hg38 13q14.2-21.31(chr13:47765202-62058520)x1 copy number loss See cases [RCV000142223] Chr13:47765202..62058520 [GRCh38]
Chr13:48339337..62632653 [GRCh37]
Chr13:47237338..61530654 [NCBI36]
Chr13:13q14.2-21.31		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19671934-114340331)x3 copy number gain See cases [RCV000142924] Chr13:19671934..114340331 [GRCh38]
Chr13:20246074..115085141 [GRCh37]
Chr13:19144074..114123908 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q11-34(chr13:18862146-114342258)x3 copy number gain See cases [RCV000143462] Chr13:18862146..114342258 [GRCh38]
Chr13:19436286..115107733 [GRCh37]
Chr13:18334286..114125835 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q12.3-31.3(chr13:31363472-90575292)x3 copy number gain See cases [RCV000148244] Chr13:31363472..90575292 [GRCh38]
Chr13:31937609..91227546 [GRCh37]
Chr13:30835609..90025547 [NCBI36]
Chr13:13q12.3-31.3		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000148126] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092569)x3 copy number gain See cases [RCV000240150] Chr13:19571503..115092569 [GRCh37]
Chr13:13q12.11-34		 pathogenic
GRCh37/hg19 13q14.3-21.1(chr13:52170957-57713087)x3 copy number gain not provided [RCV001270648] Chr13:52170957..57713087 [GRCh37]
Chr13:13q14.3-21.1		 uncertain significance
GRCh37/hg19 13q12.11-34(chr13:19571503-115092510) copy number gain See cases [RCV000449142] Chr13:19571503..115092510 [GRCh37]
Chr13:13q12.11-34		 pathogenic
GRCh37/hg19 13q14.11-31.3(chr13:42457841-91796698)x1 copy number loss See cases [RCV000446747] Chr13:42457841..91796698 [GRCh37]
Chr13:13q14.11-31.3		 pathogenic
GRCh37/hg19 13q13.1-21.31(chr13:32946120-62698217)x1 copy number loss See cases [RCV000446067] Chr13:32946120..62698217 [GRCh37]
Chr13:13q13.1-21.31		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain See cases [RCV000445886] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733) copy number gain See cases [RCV000510405] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q14.3(chr13:51786657-54834098)x1 copy number loss not provided [RCV000509218] Chr13:51786657..54834098 [GRCh37]
Chr13:13q14.3		 not provided
GRCh37/hg19 13q11-34(chr13:19436287-115107733)x3 copy number gain See cases [RCV000511880] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
NM_018204.5(CKAP2):c.949A>G (p.Ile317Val) single nucleotide variant not specified [RCV004318217] Chr13:52461775 [GRCh38]
Chr13:53035910 [GRCh37]
Chr13:13q14.3		 uncertain significance
Single allele deletion Intellectual disability [RCV000684766] Chr13:48225451..58070399 [GRCh37]
Chr13:13q14.2-21.1		 likely pathogenic
GRCh37/hg19 13q14.3(chr13:53044826-53210544)x1 copy number loss not provided [RCV000683495] Chr13:53044826..53210544 [GRCh37]
Chr13:13q14.3		 likely benign|uncertain significance
GRCh37/hg19 13q14.3-21.32(chr13:51939350-66854666)x3 copy number gain not provided [RCV000683569] Chr13:51939350..66854666 [GRCh37]
Chr13:13q14.3-21.32		 likely pathogenic
GRCh37/hg19 13q11-22.1(chr13:19436286-74045459)x3 copy number gain not provided [RCV000683572] Chr13:19436286..74045459 [GRCh37]
Chr13:13q11-22.1		 pathogenic
NC_000013.11:g.46968080_87381985del40413906 deletion Chromosome 13q14 deletion syndrome [RCV000721955] Chr13:46968080..87381985 [GRCh38]
Chr13:13q14.2-31.2		 pathogenic
GRCh37/hg19 13q11-34(chr13:19058717-115103529)x3 copy number gain not provided [RCV000738115] Chr13:19058717..115103529 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q14.3(chr13:53030565-53053768)x3 copy number gain not provided [RCV000738194] Chr13:53030565..53053768 [GRCh37]
Chr13:13q14.3		 benign
GRCh37/hg19 13q11-34(chr13:19031237-115107157)x3 copy number gain not provided [RCV000750643] Chr13:19031237..115107157 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q14.3(chr13:52801010-53167513)x3 copy number gain not provided [RCV000750725] Chr13:52801010..53167513 [GRCh37]
Chr13:13q14.3		 benign
NM_018204.5(CKAP2):c.936T>A (p.Thr312=) single nucleotide variant not provided [RCV000973508] Chr13:52461762 [GRCh38]
Chr13:53035897 [GRCh37]
Chr13:13q14.3		 benign
NM_018204.5(CKAP2):c.1156A>G (p.Asn386Asp) single nucleotide variant not provided [RCV000973509] Chr13:52462418 [GRCh38]
Chr13:53036553 [GRCh37]
Chr13:13q14.3		 benign
NM_018204.5(CKAP2):c.778C>T (p.His260Tyr) single nucleotide variant not provided [RCV000970881] Chr13:52461604 [GRCh38]
Chr13:53035739 [GRCh37]
Chr13:13q14.3		 likely benign
GRCh37/hg19 13q14.3(chr13:52538548-53354011)x3 copy number gain not provided [RCV000847753] Chr13:52538548..53354011 [GRCh37]
Chr13:13q14.3		 uncertain significance
GRCh37/hg19 13q14.2-21.2(chr13:49586017-61311845)x1 copy number loss not provided [RCV000846575] Chr13:49586017..61311845 [GRCh37]
Chr13:13q14.2-21.2		 uncertain significance
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV000849129] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
NM_018204.5(CKAP2):c.1549G>A (p.Glu517Lys) single nucleotide variant not provided [RCV000974475] Chr13:52473831 [GRCh38]
Chr13:53047966 [GRCh37]
Chr13:13q14.3		 benign
NM_018204.5(CKAP2):c.329A>G (p.Asn110Ser) single nucleotide variant not provided [RCV000898152] Chr13:52461155 [GRCh38]
Chr13:53035290 [GRCh37]
Chr13:13q14.3		 benign
GRCh37/hg19 13q14.3-31.3(chr13:51512603-91631111)x1 copy number loss not provided [RCV001006564] Chr13:51512603..91631111 [GRCh37]
Chr13:13q14.3-31.3		 pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878) copy number gain Complete trisomy 13 syndrome [RCV002280659] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34		 pathogenic
NM_018204.5(CKAP2):c.1381A>C (p.Lys461Gln) single nucleotide variant not specified [RCV004610779] Chr13:52465370 [GRCh38]
Chr13:53039505 [GRCh37]
Chr13:13q14.3		 uncertain significance
GRCh37/hg19 13q11-34(chr13:19053605-115108528)x3 copy number gain See cases [RCV001353184] Chr13:19053605..115108528 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q14.3(chr13:52535544-53362733)x3 copy number gain See cases [RCV002285117] Chr13:52535544..53362733 [GRCh37]
Chr13:13q14.3		 uncertain significance
GRCh37/hg19 13q14.13-21.31(chr13:45819046-63910212)x1 copy number loss not provided [RCV001795546] Chr13:45819046..63910212 [GRCh37]
Chr13:13q14.13-21.31		 pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878)x3 copy number gain See cases [RCV001780076] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34		 pathogenic
GRCh37/hg19 13q14.11-33.3(chr13:42504540-108206269)x3 copy number gain not provided [RCV001829235] Chr13:42504540..108206269 [GRCh37]
Chr13:13q14.11-33.3		 pathogenic
GRCh37/hg19 13q13.1-21.31(chr13:32946120-62698217) copy number loss not specified [RCV002053048] Chr13:32946120..62698217 [GRCh37]
Chr13:13q13.1-21.31		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733) copy number gain not specified [RCV002053036] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q13.3-31.1(chr13:36376204-80681753) copy number loss not specified [RCV002053052] Chr13:36376204..80681753 [GRCh37]
Chr13:13q13.3-31.1		 pathogenic
GRCh37/hg19 13q14.11-31.3(chr13:42457841-91796698) copy number loss not specified [RCV002053057] Chr13:42457841..91796698 [GRCh37]
Chr13:13q14.11-31.3		 pathogenic
GRCh37/hg19 13q14.11-14.3(chr13:44573371-53324137) copy number loss not specified [RCV002053058] Chr13:44573371..53324137 [GRCh37]
Chr13:13q14.11-14.3		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-114981726) copy number gain not specified [RCV002053035] Chr13:19436286..114981726 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV001834436] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q11-34(chr13:19253848-115108937)x3 copy number gain not provided [RCV002291540] Chr13:19253848..115108937 [GRCh37]
Chr13:13q11-34		 pathogenic
NM_018204.5(CKAP2):c.631A>G (p.Ile211Val) single nucleotide variant not specified [RCV004327696] Chr13:52461457 [GRCh38]
Chr13:53035592 [GRCh37]
Chr13:13q14.3		 likely benign
NM_018204.5(CKAP2):c.1055T>C (p.Val352Ala) single nucleotide variant not specified [RCV004210737] Chr13:52461881 [GRCh38]
Chr13:53036016 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.337G>C (p.Val113Leu) single nucleotide variant not specified [RCV004218875] Chr13:52461163 [GRCh38]
Chr13:53035298 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1708A>C (p.Lys570Gln) single nucleotide variant not specified [RCV004084775] Chr13:52473990 [GRCh38]
Chr13:53048125 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1258G>A (p.Glu420Lys) single nucleotide variant not specified [RCV004164163] Chr13:52462520 [GRCh38]
Chr13:53036655 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1840G>A (p.Ala614Thr) single nucleotide variant not specified [RCV004086322] Chr13:52474932 [GRCh38]
Chr13:53049067 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1364A>G (p.Asp455Gly) single nucleotide variant not specified [RCV004141432] Chr13:52465353 [GRCh38]
Chr13:53039488 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.802A>C (p.Lys268Gln) single nucleotide variant not specified [RCV004164164] Chr13:52461628 [GRCh38]
Chr13:53035763 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1036A>G (p.Thr346Ala) single nucleotide variant not specified [RCV004206752] Chr13:52461862 [GRCh38]
Chr13:53035997 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.70+10GCGGTG[5] microsatellite not provided [RCV002885831] Chr13:52455636..52455641 [GRCh38]
Chr13:53029771..53029776 [GRCh37]
Chr13:13q14.3		 benign
NM_018204.5(CKAP2):c.1337T>G (p.Leu446Arg) single nucleotide variant not specified [RCV004140509] Chr13:52465326 [GRCh38]
Chr13:53039461 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1495C>T (p.His499Tyr) single nucleotide variant not specified [RCV004225829] Chr13:52468296 [GRCh38]
Chr13:53042431 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.119T>C (p.Leu40Pro) single nucleotide variant not specified [RCV004154221] Chr13:52456571 [GRCh38]
Chr13:53030706 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1682G>T (p.Cys561Phe) single nucleotide variant not specified [RCV004120200] Chr13:52473964 [GRCh38]
Chr13:53048099 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1883G>A (p.Arg628Gln) single nucleotide variant not provided [RCV004695630]|not specified [RCV004193730] Chr13:52474975 [GRCh38]
Chr13:53049110 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.818G>T (p.Arg273Ile) single nucleotide variant not specified [RCV004195904] Chr13:52461644 [GRCh38]
Chr13:53035779 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.887T>C (p.Leu296Ser) single nucleotide variant not specified [RCV004179246] Chr13:52461713 [GRCh38]
Chr13:53035848 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1972G>A (p.Gly658Arg) single nucleotide variant not specified [RCV004072897] Chr13:52475064 [GRCh38]
Chr13:53049199 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.215A>C (p.Lys72Thr) single nucleotide variant not specified [RCV004136178] Chr13:52460958 [GRCh38]
Chr13:53035093 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.751C>G (p.Leu251Val) single nucleotide variant not specified [RCV004157930] Chr13:52461577 [GRCh38]
Chr13:53035712 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.791G>A (p.Arg264Gln) single nucleotide variant not specified [RCV004161493] Chr13:52461617 [GRCh38]
Chr13:53035752 [GRCh37]
Chr13:13q14.3		 likely benign
NM_018204.5(CKAP2):c.1999C>T (p.Arg667Cys) single nucleotide variant not specified [RCV004076646] Chr13:52475091 [GRCh38]
Chr13:53049226 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.205A>G (p.Lys69Glu) single nucleotide variant not specified [RCV004087741] Chr13:52460948 [GRCh38]
Chr13:53035083 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.640G>T (p.Ala214Ser) single nucleotide variant not specified [RCV004088793] Chr13:52461466 [GRCh38]
Chr13:53035601 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.715A>C (p.Thr239Pro) single nucleotide variant not specified [RCV004076801] Chr13:52461541 [GRCh38]
Chr13:53035676 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.377C>T (p.Thr126Ile) single nucleotide variant not specified [RCV004272985] Chr13:52461203 [GRCh38]
Chr13:53035338 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.977C>T (p.Ala326Val) single nucleotide variant not specified [RCV004259046] Chr13:52461803 [GRCh38]
Chr13:53035938 [GRCh37]
Chr13:13q14.3		 likely benign
NM_018204.5(CKAP2):c.1406T>C (p.Ile469Thr) single nucleotide variant not specified [RCV004339033] Chr13:52465395 [GRCh38]
Chr13:53039530 [GRCh37]
Chr13:13q14.3		 uncertain significance
GRCh37/hg19 13q14.3(chr13:51768837-54900165)x1 copy number loss not provided [RCV003483182] Chr13:51768837..54900165 [GRCh37]
Chr13:13q14.3		 uncertain significance
GRCh37/hg19 13q14.11-21.2(chr13:44076923-60520078)x1 copy number loss not specified [RCV003987012] Chr13:44076923..60520078 [GRCh37]
Chr13:13q14.11-21.2		 pathogenic
GRCh37/hg19 13q13.2-21.1(chr13:35015723-59553519)x3 copy number gain not specified [RCV003987040] Chr13:35015723..59553519 [GRCh37]
Chr13:13q13.2-21.1		 pathogenic
GRCh37/hg19 13q14.2-32.2(chr13:49547974-98214905)x1 copy number loss not specified [RCV003987008] Chr13:49547974..98214905 [GRCh37]
Chr13:13q14.2-32.2		 pathogenic
GRCh37/hg19 13q14.2-14.3(chr13:50181731-54350061)x1 copy number loss not provided [RCV004442840] Chr13:50181731..54350061 [GRCh37]
Chr13:13q14.2-14.3		 uncertain significance
NM_018204.5(CKAP2):c.1390A>G (p.Ile464Val) single nucleotide variant not specified [RCV004444035] Chr13:52465379 [GRCh38]
Chr13:53039514 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.833T>A (p.Val278Asp) single nucleotide variant not specified [RCV004444041] Chr13:52461659 [GRCh38]
Chr13:53035794 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.855T>A (p.His285Gln) single nucleotide variant not specified [RCV004444043] Chr13:52461681 [GRCh38]
Chr13:53035816 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1105C>T (p.Arg369Cys) single nucleotide variant not specified [RCV004444032] Chr13:52462367 [GRCh38]
Chr13:53036502 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1369A>G (p.Lys457Glu) single nucleotide variant not specified [RCV004444034] Chr13:52465358 [GRCh38]
Chr13:53039493 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.634C>T (p.Pro212Ser) single nucleotide variant not specified [RCV004444040] Chr13:52461460 [GRCh38]
Chr13:53035595 [GRCh37]
Chr13:13q14.3		 likely benign
NM_018204.5(CKAP2):c.1028G>A (p.Arg343Gln) single nucleotide variant not specified [RCV004444031] Chr13:52461854 [GRCh38]
Chr13:53035989 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.2030A>G (p.Tyr677Cys) single nucleotide variant not specified [RCV004444038] Chr13:52475122 [GRCh38]
Chr13:53049257 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.517C>T (p.Pro173Ser) single nucleotide variant not specified [RCV004444039] Chr13:52461343 [GRCh38]
Chr13:53035478 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.841C>T (p.Arg281Trp) single nucleotide variant not specified [RCV004444042] Chr13:52461667 [GRCh38]
Chr13:53035802 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1475A>T (p.Gln492Leu) single nucleotide variant not specified [RCV004444036] Chr13:52465464 [GRCh38]
Chr13:53039599 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.1108C>G (p.Leu370Val) single nucleotide variant not specified [RCV004444033] Chr13:52462370 [GRCh38]
Chr13:53036505 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.2020C>T (p.Arg674Trp) single nucleotide variant not specified [RCV004444037] Chr13:52475112 [GRCh38]
Chr13:53049247 [GRCh37]
Chr13:13q14.3		 uncertain significance
GRCh37/hg19 13q13.2-21.2(chr13:34884647-61309742)x1 copy number loss not provided [RCV003885457] Chr13:34884647..61309742 [GRCh37]
Chr13:13q13.2-21.2		 pathogenic
NM_018204.5(CKAP2):c.1936C>T (p.Pro646Ser) single nucleotide variant not specified [RCV004612756] Chr13:52475028 [GRCh38]
Chr13:53049163 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.424A>C (p.Thr142Pro) single nucleotide variant not specified [RCV004610777] Chr13:52461250 [GRCh38]
Chr13:53035385 [GRCh37]
Chr13:13q14.3		 uncertain significance
NM_018204.5(CKAP2):c.380C>T (p.Pro127Leu) single nucleotide variant not specified [RCV004610778] Chr13:52461206 [GRCh38]
Chr13:53035341 [GRCh37]
Chr13:13q14.3		 likely benign
NM_018204.5(CKAP2):c.20C>T (p.Pro7Leu) single nucleotide variant not specified [RCV004610776] Chr13:52455576 [GRCh38]
Chr13:53029711 [GRCh37]
Chr13:13q14.3		 uncertain significance
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR203Ahsa-miR-203aOncomiRDBexternal_infoNANA21368580

Predicted Target Of
Summary Value
Count of predictions:1486
Count of miRNA genes:519
Interacting mature miRNAs:564
Transcripts:ENST00000258607, ENST00000378034, ENST00000378037, ENST00000459902, ENST00000468284, ENST00000480747, ENST00000490903
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292823PRSTS88_HProstate tumor susceptibility QTL 88 (human)Prostate tumor susceptibility134153205867532058Human
2289192BW359_HBody weight QTL 359 (human)0.0344Body fat amountpercent fat134998940475989404Human
1643298BW212_HBody weight QTL 212 (human)2.670.0002Body weightBMI134153205867532058Human

Markers in Region
RH47265  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371353,039,648 - 53,039,746UniSTSGRCh37
Build 361351,937,649 - 51,937,747RGDNCBI36
Celera1333,957,461 - 33,957,559RGD
Cytogenetic Map13q14UniSTS
HuRef1333,778,790 - 33,778,888UniSTS
GeneMap99-GB4 RH Map13155.53UniSTS
GDB:594944  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37937,919,624 - 37,919,807UniSTSGRCh37
Build 36937,909,624 - 37,909,807RGDNCBI36
Celera937,852,796 - 37,852,979RGD
Cytogenetic Map13q14UniSTS
Cytogenetic Map9p13.2UniSTS
HuRef937,872,016 - 37,872,199UniSTS
STS-X75342  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37937,919,648 - 37,919,813UniSTSGRCh37
Build 36937,909,648 - 37,909,813RGDNCBI36
Celera937,852,820 - 37,852,985RGD
Cytogenetic Map13q14UniSTS
Cytogenetic Map9p13.2UniSTS
HuRef937,872,040 - 37,872,205UniSTS
GeneMap99-GB4 RH Map9154.96UniSTS
NCBI RH Map9549.6UniSTS
RH106549  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371353,049,383 - 53,049,686UniSTSGRCh37
Build 361351,947,384 - 51,947,687RGDNCBI36
Celera1333,947,521 - 33,947,824RGD
Cytogenetic Map13q14UniSTS
HuRef1333,787,914 - 33,788,217UniSTS
WI-12628  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371353,028,917 - 53,029,054UniSTSGRCh37
Build 361351,926,918 - 51,927,055RGDNCBI36
Celera1333,968,143 - 33,968,280RGD
Cytogenetic Map13q14UniSTS
HuRef1333,768,068 - 33,768,205UniSTS
GeneMap99-GB4 RH Map13155.43UniSTS
Whitehead-RH Map13145.2UniSTS
NCBI RH Map13449.5UniSTS
A008Q05  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371353,046,883 - 53,047,042UniSTSGRCh37
Build 361351,944,884 - 51,945,043RGDNCBI36
Celera1333,950,165 - 33,950,324RGD
Cytogenetic Map13q14UniSTS
HuRef1333,785,414 - 33,785,573UniSTS
GeneMap99-GB4 RH Map13155.33UniSTS
WI-19223  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37937,919,621 - 37,919,732UniSTSGRCh37
Build 36937,909,621 - 37,909,732RGDNCBI36
Celera937,852,793 - 37,852,904RGD
Cytogenetic Map13q14UniSTS
Cytogenetic Map9p13.2UniSTS
HuRef937,872,013 - 37,872,124UniSTS
GeneMap99-GB4 RH Map9156.38UniSTS
Whitehead-RH Map9172.6UniSTS
NCBI RH Map9549.6UniSTS
RH71287  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13q14UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map22q11.2UniSTS
GeneMap99-GB4 RH Map2246.65UniSTS
RH71387  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13q14UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map22q11.2UniSTS
GeneMap99-GB4 RH Map2245.82UniSTS
D22S1040  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13q14UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map22q11.2UniSTS
Whitehead-YAC Contig Map22 UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001098525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011535043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA308726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF177227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI499799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ429398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL359513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY062261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY062262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM541375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB512858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EC439890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF560732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y15758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000258607   ⟹   ENSP00000258607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1352,455,478 - 52,476,627 (+)Ensembl
Ensembl Acc Id: ENST00000378034   ⟹   ENSP00000367273
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1352,455,439 - 52,465,843 (+)Ensembl
Ensembl Acc Id: ENST00000378037   ⟹   ENSP00000367276
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1352,455,467 - 52,476,628 (+)Ensembl
Ensembl Acc Id: ENST00000459902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1352,473,535 - 52,475,142 (+)Ensembl
Ensembl Acc Id: ENST00000468284   ⟹   ENSP00000418431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1352,455,429 - 52,461,353 (+)Ensembl
Ensembl Acc Id: ENST00000480747   ⟹   ENSP00000418224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1352,456,008 - 52,461,258 (+)Ensembl
Ensembl Acc Id: ENST00000490903   ⟹   ENSP00000417830
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1352,455,972 - 52,476,349 (+)Ensembl
RefSeq Acc Id: NM_001098525   ⟹   NP_001091995
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381352,455,478 - 52,476,627 (+)NCBI
GRCh371353,029,495 - 53,050,763 (+)ENTREZGENE
GRCh371353,029,495 - 53,050,763 (+)NCBI
Build 361351,927,496 - 51,948,764 (+)NCBI Archive
HuRef1333,768,646 - 33,789,297 (+)NCBI
CHM1_11352,997,571 - 53,018,842 (+)NCBI
T2T-CHM13v2.01351,670,301 - 51,692,112 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286686   ⟹   NP_001273615
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381352,455,988 - 52,476,627 (+)NCBI
HuRef1333,768,646 - 33,789,297 (+)NCBI
CHM1_11352,998,183 - 53,018,842 (+)NCBI
T2T-CHM13v2.01351,670,811 - 51,692,112 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286687   ⟹   NP_001273616
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381352,455,478 - 52,465,843 (+)NCBI
HuRef1333,768,646 - 33,789,297 (+)NCBI
CHM1_11352,997,571 - 53,008,054 (+)NCBI
T2T-CHM13v2.01351,670,301 - 51,681,328 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018204   ⟹   NP_060674
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381352,455,478 - 52,476,627 (+)NCBI
GRCh371353,029,495 - 53,050,763 (+)ENTREZGENE
GRCh371353,029,495 - 53,050,763 (+)NCBI
Build 361351,927,496 - 51,948,764 (+)NCBI Archive
HuRef1333,768,646 - 33,789,297 (+)NCBI
CHM1_11352,997,571 - 53,018,842 (+)NCBI
T2T-CHM13v2.01351,670,301 - 51,692,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005266344   ⟹   XP_005266401
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381352,455,988 - 52,476,627 (+)NCBI
GRCh371353,029,495 - 53,050,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047430268   ⟹   XP_047286224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381352,455,988 - 52,476,627 (+)NCBI
RefSeq Acc Id: XM_054374449   ⟹   XP_054230424
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01351,670,811 - 51,692,112 (+)NCBI
RefSeq Acc Id: XM_054374450   ⟹   XP_054230425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01351,670,811 - 51,692,112 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001091995 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273615 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273616 (Get FASTA)   NCBI Sequence Viewer  
  NP_060674 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266401 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286224 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230424 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230425 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG33675 (Get FASTA)   NCBI Sequence Viewer  
  AAH10901 (Get FASTA)   NCBI Sequence Viewer  
  AAI05807 (Get FASTA)   NCBI Sequence Viewer  
  AAI30297 (Get FASTA)   NCBI Sequence Viewer  
  AAI36333 (Get FASTA)   NCBI Sequence Viewer  
  AAL47212 (Get FASTA)   NCBI Sequence Viewer  
  AAL47213 (Get FASTA)   NCBI Sequence Viewer  
  ABQ59042 (Get FASTA)   NCBI Sequence Viewer  
  BAA91788 (Get FASTA)   NCBI Sequence Viewer  
  BAB14345 (Get FASTA)   NCBI Sequence Viewer  
  BAG61147 (Get FASTA)   NCBI Sequence Viewer  
  CAB66782 (Get FASTA)   NCBI Sequence Viewer  
  CAC17466 (Get FASTA)   NCBI Sequence Viewer  
  CAD22295 (Get FASTA)   NCBI Sequence Viewer  
  EAW55889 (Get FASTA)   NCBI Sequence Viewer  
  EAW55890 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000258607
  ENSP00000258607.5
  ENSP00000367273
  ENSP00000367273.2
  ENSP00000367276
  ENSP00000367276.4
  ENSP00000417830
  ENSP00000417830.1
  ENSP00000418224.1
  ENSP00000418431.1
GenBank Protein Q8WWK9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001091995   ⟸   NM_001098525
- Peptide Label: isoform 2
- UniProtKB: Q9HC49 (UniProtKB/Swiss-Prot),   Q9H988 (UniProtKB/Swiss-Prot),   Q9H0D0 (UniProtKB/Swiss-Prot),   Q9H012 (UniProtKB/Swiss-Prot),   Q96FH9 (UniProtKB/Swiss-Prot),   Q8IWV6 (UniProtKB/Swiss-Prot),   Q8IWV5 (UniProtKB/Swiss-Prot),   Q5VXB4 (UniProtKB/Swiss-Prot),   Q3KRA5 (UniProtKB/Swiss-Prot),   E9PD90 (UniProtKB/Swiss-Prot),   B4DR35 (UniProtKB/Swiss-Prot),   A5YM58 (UniProtKB/Swiss-Prot),   A2BDE0 (UniProtKB/Swiss-Prot),   Q9NVG4 (UniProtKB/Swiss-Prot),   Q8WWK9 (UniProtKB/Swiss-Prot),   B2RMQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_060674   ⟸   NM_018204
- Peptide Label: isoform 1
- UniProtKB: B2RMQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005266401   ⟸   XM_005266344
- Peptide Label: isoform X1
- UniProtKB: B2RMQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273616   ⟸   NM_001286687
- Peptide Label: isoform 4
- UniProtKB: Q8WWK9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273615   ⟸   NM_001286686
- Peptide Label: isoform 3
- UniProtKB: B2RMQ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000417830   ⟸   ENST00000490903
Ensembl Acc Id: ENSP00000418431   ⟸   ENST00000468284
Ensembl Acc Id: ENSP00000258607   ⟸   ENST00000258607
Ensembl Acc Id: ENSP00000418224   ⟸   ENST00000480747
Ensembl Acc Id: ENSP00000367273   ⟸   ENST00000378034
Ensembl Acc Id: ENSP00000367276   ⟸   ENST00000378037
RefSeq Acc Id: XP_047286224   ⟸   XM_047430268
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054230424   ⟸   XM_054374449
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054230425   ⟸   XM_054374450
- Peptide Label: isoform X2
Protein Domains
Cytoskeleton-associated protein 2 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8WWK9-F1-model_v2 AlphaFold Q8WWK9 1-683 view protein structure

Promoters
RGD ID:6790752
Promoter ID:HG_KWN:17965
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000398044,   NM_001098525,   NM_018204,   UC001VGT.2
Position:
Human AssemblyChrPosition (strand)Source
Build 361351,926,626 - 51,927,977 (+)MPROMDB
RGD ID:7226521
Promoter ID:EPDNEW_H19007
Type:initiation region
Name:CKAP2_1
Description:cytoskeleton associated protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381352,455,480 - 52,455,540EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1990 AgrOrtholog
COSMIC CKAP2 COSMIC
Ensembl Genes ENSG00000136108 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000258607 ENTREZGENE
  ENST00000258607.10 UniProtKB/Swiss-Prot
  ENST00000378034 ENTREZGENE
  ENST00000378034.7 UniProtKB/Swiss-Prot
  ENST00000378037 ENTREZGENE
  ENST00000378037.9 UniProtKB/Swiss-Prot
  ENST00000468284.1 UniProtKB/TrEMBL
  ENST00000480747.1 UniProtKB/TrEMBL
  ENST00000490903 ENTREZGENE
  ENST00000490903.5 UniProtKB/Swiss-Prot
GTEx ENSG00000136108 GTEx
HGNC ID HGNC:1990 ENTREZGENE
Human Proteome Map CKAP2 Human Proteome Map
InterPro CKAP2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CKAP2_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:26586 UniProtKB/Swiss-Prot
NCBI Gene 26586 ENTREZGENE
OMIM 611569 OMIM
PANTHER CYTOSKELETON-ASSOCIATED PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16076 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CKAP2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26526 PharmGKB
UniProt A2BDE0 ENTREZGENE
  A5YM58 ENTREZGENE
  B2RMQ4 ENTREZGENE, UniProtKB/TrEMBL
  B4DR35 ENTREZGENE
  C9J649_HUMAN UniProtKB/TrEMBL
  C9J7Y4_HUMAN UniProtKB/TrEMBL
  CKAP2_HUMAN UniProtKB/Swiss-Prot
  E9PD90 ENTREZGENE
  Q3KRA5 ENTREZGENE
  Q5VXB4 ENTREZGENE
  Q8IWV5 ENTREZGENE
  Q8IWV6 ENTREZGENE
  Q8WWK9 ENTREZGENE
  Q96FH9 ENTREZGENE
  Q9H012 ENTREZGENE
  Q9H0D0 ENTREZGENE
  Q9H988 ENTREZGENE
  Q9HC49 ENTREZGENE
  Q9NVG4 ENTREZGENE
UniProt Secondary A2BDE0 UniProtKB/Swiss-Prot
  A5YM58 UniProtKB/Swiss-Prot
  B4DR35 UniProtKB/Swiss-Prot
  E9PD90 UniProtKB/Swiss-Prot
  Q3KRA5 UniProtKB/Swiss-Prot
  Q5VXB4 UniProtKB/Swiss-Prot
  Q8IWV5 UniProtKB/Swiss-Prot
  Q8IWV6 UniProtKB/Swiss-Prot
  Q96FH9 UniProtKB/Swiss-Prot
  Q9H012 UniProtKB/Swiss-Prot
  Q9H0D0 UniProtKB/Swiss-Prot
  Q9H988 UniProtKB/Swiss-Prot
  Q9HC49 UniProtKB/Swiss-Prot
  Q9NVG4 UniProtKB/Swiss-Prot