Ints9 (integrator complex subunit 9) - Rat Genome Database

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Gene: Ints9 (integrator complex subunit 9) Mus musculus
Analyze
Symbol: Ints9
Name: integrator complex subunit 9
RGD ID: 1323050
MGI Page MGI
Description: Predicted to be involved in negative regulation of transforming growth factor beta receptor signaling pathway and snRNA 3'-end processing. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of integrator complex. Orthologous to human INTS9 (integrator complex subunit 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC028953; D14Ertd231; D14Ertd231e; int9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391465,187,494 - 65,277,284 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1465,187,494 - 65,277,284 (+)EnsemblGRCm39 Ensembl
GRCm381464,950,045 - 65,039,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,950,045 - 65,039,832 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,950,045 - 65,039,835 (+)EnsemblGRCm38mm10GRCm38
MGSCv371465,568,882 - 65,658,663 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361463,904,155 - 63,993,936 (+)NCBIMGSCv36mm8
Celera1462,711,961 - 62,802,247 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
integrator complex  (IBA,IEA,ISO)
nucleoplasm  (ISO)
nucleus  (ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:21677750   PMID:21873635   PMID:26206133   PMID:26584622   PMID:31138677   PMID:38355793  


Genomics

Comparative Map Data
Ints9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391465,187,494 - 65,277,284 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1465,187,494 - 65,277,284 (+)EnsemblGRCm39 Ensembl
GRCm381464,950,045 - 65,039,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,950,045 - 65,039,832 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,950,045 - 65,039,835 (+)EnsemblGRCm38mm10GRCm38
MGSCv371465,568,882 - 65,658,663 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361463,904,155 - 63,993,936 (+)NCBIMGSCv36mm8
Celera1462,711,961 - 62,802,247 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.81NCBI
INTS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38828,767,661 - 28,889,969 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl828,767,661 - 28,890,242 (-)EnsemblGRCh38hg38GRCh38
GRCh37828,625,178 - 28,747,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36828,681,099 - 28,803,398 (-)NCBINCBI36Build 36hg18NCBI36
Celera827,585,025 - 27,707,519 (-)NCBICelera
Cytogenetic Map8p21.1NCBI
HuRef827,170,713 - 27,292,794 (-)NCBIHuRef
CHM1_1828,827,212 - 28,949,697 (-)NCBICHM1_1
T2T-CHM13v2.0829,045,883 - 29,168,153 (-)NCBIT2T-CHM13v2.0
Ints9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,376,235 - 43,460,549 (+)NCBIGRCr8
mRatBN7.21539,200,541 - 39,284,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,200,553 - 39,303,189 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1541,065,446 - 41,149,179 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01542,216,131 - 42,299,870 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01540,660,981 - 40,745,273 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01548,326,728 - 48,413,792 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,327,461 - 48,411,462 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01552,074,082 - 52,160,485 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41544,305,731 - 44,389,322 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11544,321,372 - 44,405,016 (+)NCBI
Celera1538,876,823 - 38,960,851 (+)NCBICelera
Cytogenetic Map15p12NCBI
Ints9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540351,109,751 - 51,199,136 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540351,111,418 - 51,199,430 (-)NCBIChiLan1.0ChiLan1.0
INTS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2747,311,623 - 47,435,019 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1823,024,615 - 23,148,007 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0828,049,858 - 28,173,046 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1825,247,565 - 25,369,907 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl825,247,565 - 25,369,907 (-)Ensemblpanpan1.1panPan2
INTS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12528,679,470 - 28,779,931 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2528,679,465 - 28,904,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2529,327,374 - 29,428,497 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02528,835,218 - 28,935,751 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2528,835,487 - 28,935,746 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12528,795,031 - 28,896,165 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02528,680,435 - 28,781,769 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02528,842,816 - 28,944,349 (+)NCBIUU_Cfam_GSD_1.0
Ints9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049437,006,739 - 7,098,808 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366751,486,036 - 1,578,551 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366751,489,833 - 1,578,499 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INTS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1412,577,104 - 12,692,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11412,577,095 - 12,692,440 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21413,726,714 - 13,790,370 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INTS9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1826,872,786 - 26,999,410 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl826,872,726 - 26,999,265 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605215,131,526 - 15,257,546 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ints9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475823,378,233 - 23,472,367 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475823,378,362 - 23,472,415 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ints9
2519 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:125
Interacting mature miRNAs:137
Transcripts:ENSMUST00000043914
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse

Markers in Region
RH126495  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381465,039,589 - 65,039,823UniSTSGRCm38
MGSCv371465,658,426 - 65,658,660UniSTSGRCm37
Celera1462,802,011 - 62,802,244UniSTS
Cytogenetic Map14D1UniSTS
cM Map1428.0UniSTS
Whitehead/MRC_RH14743.19UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000043914   ⟹   ENSMUSP00000045552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1465,187,494 - 65,277,281 (+)Ensembl
GRCm38.p6 Ensembl1464,950,045 - 65,039,832 (+)Ensembl
Ensembl Acc Id: ENSMUST00000224593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1465,187,751 - 65,248,249 (+)Ensembl
GRCm38.p6 Ensembl1464,950,302 - 65,010,800 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1465,187,762 - 65,273,009 (+)Ensembl
GRCm38.p6 Ensembl1464,950,313 - 65,035,560 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239450   ⟹   ENSMUSP00000159373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1465,187,494 - 65,277,284 (+)Ensembl
GRCm38.p6 Ensembl1464,950,045 - 65,039,835 (+)Ensembl
RefSeq Acc Id: NM_001253731   ⟹   NP_001240660
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391465,187,494 - 65,277,284 (+)NCBI
GRCm381464,950,045 - 65,039,835 (+)ENTREZGENE
Celera1462,711,961 - 62,802,256 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_153414   ⟹   NP_700463
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391465,187,742 - 65,277,284 (+)NCBI
GRCm381464,950,293 - 65,039,835 (+)NCBI
MGSCv371465,568,882 - 65,658,663 (+)RGD
Celera1462,711,961 - 62,802,256 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_700463   ⟸   NM_153414
- Peptide Label: isoform 1
- UniProtKB: Q8K114 (UniProtKB/Swiss-Prot),   Q8CAE4 (UniProtKB/Swiss-Prot),   Q8BP62 (UniProtKB/Swiss-Prot),   A0A0R4J0J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240660   ⟸   NM_001253731
- Peptide Label: isoform 2
- UniProtKB: A0A0R4J0J5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000159373   ⟸   ENSMUST00000239450
Ensembl Acc Id: ENSMUSP00000045552   ⟸   ENSMUST00000043914
Protein Domains
Beta-Casp

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K114-F1-model_v2 AlphaFold Q8K114 1-658 view protein structure

Promoters
RGD ID:8682764
Promoter ID:EPDNEW_M19406
Type:multiple initiation site
Name:Ints9_1
Description:Mus musculus integrator complex subunit 9 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19407  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381464,950,045 - 64,950,105EPDNEW
RGD ID:8682752
Promoter ID:EPDNEW_M19407
Type:multiple initiation site
Name:Ints9_2
Description:Mus musculus integrator complex subunit 9 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19406  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381464,950,319 - 64,950,379EPDNEW
RGD ID:6825075
Promoter ID:MM_KWN:17231
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000022544,   NM_153414,   NM_177338,   UC007UIQ.1,   UC007UIS.1,   UC007UIT.1,   UC007UIU.1,   UC007UIV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361465,567,781 - 65,569,242 (+)MPROMDB
RGD ID:6825073
Promoter ID:MM_KWN:17232
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000067704
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361465,598,256 - 65,598,756 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098533 AgrOrtholog
Ensembl Genes ENSMUSG00000021975 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043914 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000043914.8 UniProtKB/Swiss-Prot
  ENSMUST00000239450.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10890 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.60.15.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Beta_Casp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrator_9su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IntS9-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Metallo-B-lactamas UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RibonucZ/Hydroxyglut_hydro UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:210925 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1098533 ENTREZGENE
NCBI Gene Ints9 ENTREZGENE
PANTHER INTEGRATOR COMPLEX SUBUNIT 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46094 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Beta-Casp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IntS9_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lactamase_B_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ints9 PhenoGen
SMART Beta-Casp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56281 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J0J5 ENTREZGENE, UniProtKB/TrEMBL
  INT9_MOUSE UniProtKB/Swiss-Prot
  Q8BP62 ENTREZGENE
  Q8CAE4 ENTREZGENE
  Q8K114 ENTREZGENE
UniProt Secondary Q8BP62 UniProtKB/Swiss-Prot
  Q8CAE4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Ints9  integrator complex subunit 9  D14Ertd231e  DNA segment, Chr 14, ERATO Doi 231, expressed  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 D14Ertd231e  DNA segment, Chr 14, ERATO Doi 231, expressed  Ints9  integrator complex subunit 9  Symbol and/or name change 5135510 APPROVED