Rnf7 (ring finger protein 7) - Rat Genome Database

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Gene: Rnf7 (ring finger protein 7) Mus musculus
Analyze
Symbol: Rnf7
Name: ring finger protein 7
RGD ID: 1322299
MGI Page MGI
Description: Enables ubiquitin protein ligase activity. Involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of neuron migration. Acts upstream of with a negative effect on reelin-mediated signaling pathway. Acts upstream of or within several processes, including brain development; intrinsic apoptotic signaling pathway in response to oxidative stress; and positive regulation of cysteine-type endopeptidase activity. Located in cytoplasm and nucleus. Part of Cul5-RING ubiquitin ligase complex. Is expressed in central nervous system; eye; and genitourinary system. Orthologous to human RNF7 (ring finger protein 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Rbx; Rbx2; RING-box protein 2; S; SAG; sensitive to apoptosis gene protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm35144   Rnf7l  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,352,990 - 96,360,728 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl996,352,990 - 96,360,728 (-)EnsemblGRCm39 Ensembl
GRCm38996,470,937 - 96,478,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,470,937 - 96,478,675 (-)EnsemblGRCm38mm10GRCm38
MGSCv37996,371,376 - 96,379,014 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36996,280,289 - 96,327,074 (-)NCBIMGSCv36mm8
Celera996,029,356 - 96,036,994 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Cul5-RING ubiquitin ligase complex  (IBA,IDA,ISO)
cytoplasm  (IDA,ISO)
cytosol  (ISO,TAS)
nucleoplasm  (ISO)
nucleus  (IBA,IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10082581   PMID:10349636   PMID:10506102   PMID:10851089   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11255262   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:12819125   PMID:14610273   PMID:15489334   PMID:15601820   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17062627   PMID:17240529   PMID:18258608   PMID:18287559   PMID:18799693  
PMID:19037258   PMID:20638939   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22118770   PMID:22405651   PMID:23990909   PMID:24210661   PMID:24213570   PMID:24430184   PMID:24569637  
PMID:25622904   PMID:25850934   PMID:26056141   PMID:27543965   PMID:27689697   PMID:29361558   PMID:30269386   PMID:30418981   PMID:30574150   PMID:32325033   PMID:32513959   PMID:32554809  
PMID:32873638   PMID:33268465   PMID:36543126   PMID:36745565   PMID:38355793   PMID:38873758  


Genomics

Comparative Map Data
Rnf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,352,990 - 96,360,728 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl996,352,990 - 96,360,728 (-)EnsemblGRCm39 Ensembl
GRCm38996,470,937 - 96,478,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,470,937 - 96,478,675 (-)EnsemblGRCm38mm10GRCm38
MGSCv37996,371,376 - 96,379,014 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36996,280,289 - 96,327,074 (-)NCBIMGSCv36mm8
Celera996,029,356 - 96,036,994 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.63NCBI
RNF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383141,738,298 - 141,747,560 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3141,738,249 - 141,747,560 (+)EnsemblGRCh38hg38GRCh38
GRCh373141,457,140 - 141,466,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363142,939,741 - 142,947,933 (+)NCBINCBI36Build 36hg18NCBI36
Build 343142,939,748 - 142,947,940NCBI
Celera3139,880,505 - 139,888,693 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3138,830,734 - 138,839,328 (+)NCBIHuRef
CHM1_13141,420,074 - 141,428,668 (+)NCBICHM1_1
T2T-CHM13v2.03144,485,514 - 144,494,774 (+)NCBIT2T-CHM13v2.0
Rnf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88105,918,395 - 105,927,643 (-)NCBIGRCr8
mRatBN7.2897,038,845 - 97,048,080 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,038,840 - 97,047,824 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8102,703,632 - 102,712,543 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08100,902,890 - 100,911,801 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,741,847 - 98,750,758 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,326,719 - 104,336,098 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,326,719 - 104,335,729 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08103,774,031 - 103,783,041 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,534,827 - 101,543,837 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18101,554,323 - 101,563,258 (-)NCBI
Celera896,481,487 - 96,490,405 (-)NCBICelera
Cytogenetic Map8q31NCBI
Rnf7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555084,001,441 - 4,003,518 (-)NCBIChiLan1.0ChiLan1.0
RNF7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,649,584 - 139,657,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13139,654,420 - 139,661,914 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03138,772,581 - 138,780,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13146,369,779 - 146,377,233 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3146,369,779 - 146,377,233 (+)Ensemblpanpan1.1panPan2
RNF7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12337,578,222 - 37,584,862 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2337,578,273 - 37,584,523 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2337,569,830 - 37,576,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02338,107,894 - 38,114,562 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2338,107,978 - 38,114,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12337,791,088 - 37,797,760 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02337,868,181 - 37,874,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02338,110,945 - 38,117,638 (+)NCBIUU_Cfam_GSD_1.0
Rnf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560276,744,624 - 76,751,375 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365403,484,053 - 3,491,162 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365403,484,422 - 3,491,162 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1382,548,421 - 82,555,685 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11382,548,475 - 82,554,888 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21390,378,331 - 90,385,390 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11548,863,402 - 48,871,321 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1548,860,281 - 48,871,339 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604121,799,141 - 21,806,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473018,379,682 - 18,390,788 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473018,379,177 - 18,388,505 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf7
234 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:576
Count of miRNA genes:410
Interacting mature miRNAs:473
Transcripts:ENSMUST00000057500, ENSMUST00000071301, ENSMUST00000128955
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse

Markers in Region
UniSTS:236224  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38996,503,390 - 96,503,596UniSTSGRCm38
MGSCv37996,403,809 - 96,404,015UniSTSGRCm37
Celera996,062,466 - 96,062,672UniSTS
Cytogenetic Map9D2.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001311135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF092877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF018220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY781065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ231571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000057500   ⟹   ENSMUSP00000052856
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl996,352,990 - 96,360,728 (-)Ensembl
GRCm38.p6 Ensembl996,470,937 - 96,478,675 (-)Ensembl
Ensembl Acc Id: ENSMUST00000071301   ⟹   ENSMUSP00000108581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl996,353,816 - 96,360,663 (-)Ensembl
GRCm38.p6 Ensembl996,471,763 - 96,478,610 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl996,355,915 - 96,360,641 (-)Ensembl
GRCm38.p6 Ensembl996,473,862 - 96,478,588 (-)Ensembl
RefSeq Acc Id: NM_001311135   ⟹   NP_001298064
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39996,352,990 - 96,360,728 (-)NCBI
GRCm38996,470,937 - 96,478,675 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011279   ⟹   NP_035409
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39996,352,990 - 96,360,728 (-)NCBI
GRCm38996,470,937 - 96,478,675 (-)NCBI
MGSCv37996,371,376 - 96,379,014 (-)RGD
Celera996,029,356 - 96,036,994 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035409   ⟸   NM_011279
- Peptide Label: isoform 1
- UniProtKB: Q3UKF8 (UniProtKB/Swiss-Prot),   Q9WTZ1 (UniProtKB/Swiss-Prot),   D3Z497 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001298064   ⟸   NM_001311135
- Peptide Label: isoform 2
- UniProtKB: D3Z392 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000108581   ⟸   ENSMUST00000071301
Ensembl Acc Id: ENSMUSP00000052856   ⟸   ENSMUST00000057500

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WTZ1-F1-model_v2 AlphaFold Q9WTZ1 1-113 view protein structure

Promoters
RGD ID:6845049
Promoter ID:MM_KWN:58420
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000071301,   OTTMUST00000055285,   OTTMUST00000055287
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36996,378,861 - 96,379,361 (-)MPROMDB
RGD ID:8670494
Promoter ID:EPDNEW_M13278
Type:initiation region
Name:Rnf7_1
Description:Mus musculus ring finger protein 7 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38996,478,598 - 96,478,658EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1337096 AgrOrtholog
Ensembl Genes ENSMUSG00000051234 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057500 ENTREZGENE
  ENSMUST00000057500.6 UniProtKB/Swiss-Prot
  ENSMUST00000071301 ENTREZGENE
  ENSMUST00000071301.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RING-box_E3_Ubiquitin_Ligase UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_H2 UniProtKB/Swiss-Prot
KEGG Report mmu:19823 UniProtKB/Swiss-Prot
MGD MGI:1337096 ENTREZGENE
NCBI Gene 19823 ENTREZGENE
PANTHER RING BOX UniProtKB/Swiss-Prot
Pfam zf-rbx1 UniProtKB/Swiss-Prot
PhenoGen Rnf7 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z392 ENTREZGENE, UniProtKB/TrEMBL
  D3Z497 ENTREZGENE
  Q3UKF8 ENTREZGENE
  Q9WTZ1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UKF8 UniProtKB/Swiss-Prot