Rnf7 (ring finger protein 7) - Rat Genome Database

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Gene: Rnf7 (ring finger protein 7) Chinchilla lanigera
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Symbol: Rnf7
Name: ring finger protein 7
RGD ID: 8829005
Description: ENCODES a protein that exhibits cullin family protein binding (ortholog); NEDD8 ligase activity (ortholog); INVOLVED IN activation of cysteine-type endopeptidase activity involved in apoptotic process (ortholog); apoptotic mitochondrial changes (ortholog); cerebral cortex radially oriented cell migration (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RING-box protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555084,001,441 - 4,003,518 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Rnf7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555084,001,441 - 4,003,518 (-)NCBIChiLan1.0ChiLan1.0
RNF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383141,738,298 - 141,747,560 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3141,738,249 - 141,747,560 (+)EnsemblGRCh38hg38GRCh38
GRCh373141,457,140 - 141,466,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363142,939,741 - 142,947,933 (+)NCBINCBI36hg18NCBI36
Build 343142,939,748 - 142,947,940NCBI
Celera3139,880,505 - 139,888,693 (+)NCBI
Cytogenetic Map3q23NCBI
HuRef3138,830,734 - 138,839,328 (+)NCBIHuRef
CHM1_13141,420,074 - 141,428,668 (+)NCBICHM1_1
T2T-CHM13v2.03144,485,514 - 144,494,774 (+)NCBI
Rnf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,352,990 - 96,360,728 (-)NCBIGRCm39mm39
GRCm39 Ensembl996,352,990 - 96,360,728 (-)Ensembl
GRCm38996,470,937 - 96,478,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,470,937 - 96,478,675 (-)EnsemblGRCm38mm10GRCm38
MGSCv37996,371,376 - 96,379,014 (-)NCBIGRCm37mm9NCBIm37
MGSCv36996,280,289 - 96,327,074 (-)NCBImm8
Celera996,029,356 - 96,036,994 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
Rnf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2897,038,845 - 97,048,080 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl897,038,840 - 97,047,824 (-)Ensembl
Rnor_6.08104,326,719 - 104,336,098 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,326,719 - 104,335,729 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08103,774,031 - 103,783,041 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,534,827 - 101,543,837 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18101,554,323 - 101,563,258 (-)NCBI
Celera896,481,487 - 96,490,405 (-)NCBICelera
Cytogenetic Map8q31NCBI
RNF7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13146,369,779 - 146,377,233 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3146,369,779 - 146,377,233 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03138,772,581 - 138,780,763 (+)NCBIMhudiblu_PPA_v0panPan3
RNF7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12337,578,222 - 37,584,862 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2337,578,273 - 37,584,523 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2337,569,830 - 37,576,519 (+)NCBI
ROS_Cfam_1.02338,107,894 - 38,114,562 (+)NCBI
ROS_Cfam_1.0 Ensembl2338,107,978 - 38,114,846 (+)Ensembl
UMICH_Zoey_3.12337,791,088 - 37,797,760 (+)NCBI
UNSW_CanFamBas_1.02337,868,181 - 37,874,831 (+)NCBI
UU_Cfam_GSD_1.02338,110,945 - 38,117,638 (+)NCBI
Rnf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560276,744,624 - 76,751,375 (+)NCBI
SpeTri2.0NW_0049365403,484,422 - 3,491,162 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1382,548,421 - 82,555,685 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11382,548,475 - 82,554,888 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21390,378,331 - 90,385,390 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11548,863,402 - 48,871,321 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1548,860,281 - 48,871,339 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604121,799,141 - 21,806,283 (-)NCBIVero_WHO_p1.0
Rnf7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473018,379,682 - 18,390,788 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473018,379,177 - 18,388,505 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005407754   ⟹   XP_005407811
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555084,001,441 - 4,003,518 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407811 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005407811   ⟸   XM_005407754
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Rnf7 ENTREZGENE