Gga3 (golgi associated, gamma adaptin ear containing, ARF binding protein 3) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gga3 (golgi associated, gamma adaptin ear containing, ARF binding protein 3) Mus musculus
Analyze
Symbol: Gga3
Name: golgi associated, gamma adaptin ear containing, ARF binding protein 3
RGD ID: 1319956
MGI Page MGI
Description: Predicted to enable protein transporter activity; small GTPase binding activity; and ubiquitin binding activity. Acts upstream of or within positive regulation of protein catabolic process and protein localization to lysosome. Predicted to be located in Golgi apparatus; endosome; and lysosome. Predicted to be part of protein-containing complex. Predicted to be active in trans-Golgi network. Is expressed in several structures, including heart; liver; lung; metanephros; and white fat. Orthologous to human GGA3 (golgi associated, gamma adaptin ear containing, ARF binding protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ADP-ribosylation factor-binding protein GGA3; C230037M19Rik; golgi-localized, gamma ear-containing, ARF-binding protein 3; mKIAA0154
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,475,081 - 115,495,501 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,475,081 - 115,494,877 (-)EnsemblGRCm39 Ensembl
GRCm3811115,584,255 - 115,604,517 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,584,255 - 115,604,051 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,445,569 - 115,465,220 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,400,801 - 115,419,975 (-)NCBIMGSCv36mm8
Celera11127,352,022 - 127,371,680 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14621295   PMID:15741177   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:18799693   PMID:20484053   PMID:21267068   PMID:21873635   PMID:22291915   PMID:22836275   PMID:24089482   PMID:25592972   PMID:27192432  
PMID:28190767   PMID:29391027   PMID:32325033   PMID:33208500  


Genomics

Comparative Map Data
Gga3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,475,081 - 115,495,501 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,475,081 - 115,494,877 (-)EnsemblGRCm39 Ensembl
GRCm3811115,584,255 - 115,604,517 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,584,255 - 115,604,051 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,445,569 - 115,465,220 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,400,801 - 115,419,975 (-)NCBIMGSCv36mm8
Celera11127,352,022 - 127,371,680 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.89NCBI
GGA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,236,599 - 75,262,363 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,236,599 - 75,262,363 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,232,694 - 73,258,444 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,744,290 - 70,769,272 (-)NCBINCBI36Build 36hg18NCBI36
Build 341770,744,289 - 70,769,272NCBI
Celera1769,825,023 - 69,850,791 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,642,387 - 68,668,634 (-)NCBIHuRef
CHM1_11773,297,254 - 73,323,022 (-)NCBICHM1_1
T2T-CHM13v2.01776,128,675 - 76,154,454 (-)NCBIT2T-CHM13v2.0
Gga3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,324,378 - 101,342,373 (-)NCBIGRCr8
mRatBN7.210100,825,427 - 100,843,422 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,825,426 - 100,844,462 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,885,638 - 105,904,664 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,348,711 - 105,367,737 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,746,398 - 100,765,434 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,137,655 - 104,156,576 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,137,655 - 104,156,576 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,124,628 - 104,143,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,665,476 - 105,684,513 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,680,483 - 105,698,186 (-)NCBI
Celera1099,399,869 - 99,418,903 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Gga3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,108,379 - 2,124,748 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,103,694 - 2,124,748 (-)NCBIChiLan1.0ChiLan1.0
GGA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,275,986 - 91,301,164 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,099,060 - 96,124,342 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,185,045 - 69,208,766 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,737,164 - 74,762,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,737,164 - 74,762,039 (-)Ensemblpanpan1.1panPan2
GGA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,235,377 - 5,250,982 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,235,025 - 5,249,361 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,913,638 - 5,929,958 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,904,719 - 5,921,031 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,905,524 - 5,921,037 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,943,474 - 5,959,763 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,053,691 - 6,070,007 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,113,427 - 6,130,011 (+)NCBIUU_Cfam_GSD_1.0
Gga3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,863,468 - 5,886,500 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594532,342 - 548,440 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594531,844 - 548,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GGA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,055,696 - 6,074,478 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,051,854 - 6,072,424 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,023,618 - 6,034,858 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GGA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,410,941 - 46,432,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,411,391 - 46,432,991 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,181,468 - 17,202,614 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gga3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,059,126 - 5,073,157 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,057,611 - 5,073,276 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gga3
643 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3029
Count of miRNA genes:723
Interacting mature miRNAs:910
Transcripts:ENSMUST00000019135, ENSMUST00000106508, ENSMUST00000123485, ENSMUST00000123831, ENSMUST00000125097, ENSMUST00000128437, ENSMUST00000132503, ENSMUST00000136790, ENSMUST00000148782, ENSMUST00000149814, ENSMUST00000154832, ENSMUST00000156173
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse

Markers in Region
UniSTS:236776  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811115,584,567 - 115,584,689UniSTSGRCm38
MGSCv3711115,445,881 - 115,446,003UniSTSGRCm37
Celera11127,352,334 - 127,352,456UniSTS
Cytogenetic Map11E2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK031086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW551893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY268727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY296723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000019135   ⟹   ENSMUSP00000019135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,475,081 - 115,494,877 (-)Ensembl
GRCm38.p6 Ensembl11115,584,255 - 115,604,051 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106508   ⟹   ENSMUSP00000102117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,475,081 - 115,494,877 (-)Ensembl
GRCm38.p6 Ensembl11115,584,255 - 115,604,051 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,476,530 - 115,479,881 (-)Ensembl
GRCm38.p6 Ensembl11115,585,704 - 115,589,055 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,478,762 - 115,494,702 (-)Ensembl
GRCm38.p6 Ensembl11115,587,936 - 115,603,876 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125097   ⟹   ENSMUSP00000118024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,482,468 - 115,494,719 (-)Ensembl
GRCm38.p6 Ensembl11115,591,642 - 115,603,893 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,476,613 - 115,494,710 (-)Ensembl
GRCm38.p6 Ensembl11115,585,787 - 115,603,884 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,483,343 - 115,494,706 (-)Ensembl
GRCm38.p6 Ensembl11115,592,517 - 115,603,880 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,478,411 - 115,478,853 (-)Ensembl
GRCm38.p6 Ensembl11115,587,585 - 115,588,027 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,479,303 - 115,494,714 (-)Ensembl
GRCm38.p6 Ensembl11115,588,477 - 115,603,888 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,483,325 - 115,494,550 (-)Ensembl
GRCm38.p6 Ensembl11115,592,499 - 115,603,724 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154832
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,475,190 - 115,480,347 (-)Ensembl
GRCm38.p6 Ensembl11115,584,364 - 115,589,521 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156173   ⟹   ENSMUSP00000138597
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,475,081 - 115,494,877 (-)Ensembl
GRCm38.p6 Ensembl11115,584,255 - 115,604,051 (-)Ensembl
RefSeq Acc Id: NM_001252067   ⟹   NP_001238996
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,475,081 - 115,494,711 (-)NCBI
GRCm3811115,584,255 - 115,603,916 (-)NCBI
Celera11127,352,022 - 127,371,690 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_173048   ⟹   NP_766636
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,475,081 - 115,494,711 (-)NCBI
GRCm3811115,584,255 - 115,603,916 (-)NCBI
MGSCv3711115,445,569 - 115,465,220 (-)RGD
Celera11127,352,022 - 127,371,690 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533365   ⟹   XP_006533428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,475,081 - 115,494,927 (-)NCBI
GRCm3811115,584,255 - 115,604,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249031   ⟹   XP_011247333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,475,081 - 115,494,727 (-)NCBI
GRCm3811115,584,255 - 115,603,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249032   ⟹   XP_011247334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,475,081 - 115,482,481 (-)NCBI
GRCm3811115,584,255 - 115,591,655 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936965
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,475,081 - 115,495,501 (-)NCBI
Sequence:
RefSeq Acc Id: XR_388465
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,475,081 - 115,495,501 (-)NCBI
GRCm3811115,584,255 - 115,604,517 (-)NCBI
Sequence:
RefSeq Acc Id: NP_766636   ⟸   NM_173048
- Peptide Label: isoform 1
- UniProtKB: Q3V1Y0 (UniProtKB/Swiss-Prot),   Q80U71 (UniProtKB/Swiss-Prot),   Q8BMI3 (UniProtKB/Swiss-Prot),   S4R2D2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001238996   ⟸   NM_001252067
- Peptide Label: isoform 2
- UniProtKB: A2A9W7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533428   ⟸   XM_006533365
- Peptide Label: isoform X1
- UniProtKB: S4R2D2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247333   ⟸   XM_011249031
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011247334   ⟸   XM_011249032
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSMUSP00000118024   ⟸   ENSMUST00000125097
Ensembl Acc Id: ENSMUSP00000102117   ⟸   ENSMUST00000106508
Ensembl Acc Id: ENSMUSP00000019135   ⟸   ENSMUST00000019135
Ensembl Acc Id: ENSMUSP00000138597   ⟸   ENSMUST00000156173
Protein Domains
GAE   GAT   VHS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BMI3-F1-model_v2 AlphaFold Q8BMI3 1-718 view protein structure

Promoters
RGD ID:6820938
Promoter ID:MM_KWN:10544
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000014296
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611115,449,101 - 115,449,752 (-)MPROMDB
RGD ID:6820934
Promoter ID:MM_KWN:10547
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   Brain,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000007400,   OTTMUST00000007401,   OTTMUST00000007402,   OTTMUST00000007403,   OTTMUST00000007404,   OTTMUST00000007405,   OTTMUST00000007406,   OTTMUST00000014297,   OTTMUST00000014298
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611115,464,946 - 115,465,446 (-)MPROMDB
RGD ID:8677360
Promoter ID:EPDNEW_M16711
Type:single initiation site
Name:Gga3_2
Description:Mus musculus golgi associated, gamma adaptin ear containing,ARF binding protein 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16712  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811115,590,858 - 115,590,918EPDNEW
RGD ID:8677362
Promoter ID:EPDNEW_M16712
Type:multiple initiation site
Name:Gga3_1
Description:Mus musculus golgi associated, gamma adaptin ear containing,ARF binding protein 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16711  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811115,603,883 - 115,603,943EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384159 AgrOrtholog
Ensembl Genes ENSMUSG00000020740 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019135 ENTREZGENE
  ENSMUST00000019135.14 UniProtKB/Swiss-Prot
  ENSMUST00000106508 ENTREZGENE
  ENSMUST00000106508.10 UniProtKB/TrEMBL
  ENSMUST00000125097.2 UniProtKB/TrEMBL
  ENSMUST00000156173 ENTREZGENE
  ENSMUST00000156173.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.1230 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Clathrin_a/b/g-adaptin_app_Ig UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_app_Ig-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAT_GGA3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GGA3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GGA_N-GAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHS_GGA3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:260302 UniProtKB/Swiss-Prot
MGD MGI:2384159 ENTREZGENE
NCBI Gene 260302 ENTREZGENE
PANTHER GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45905:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Alpha_adaptinC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GGA_N-GAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gga3 PhenoGen
PROSITE GAE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Alpha_adaptinC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP GAT-like domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48464 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A9W5_MOUSE UniProtKB/TrEMBL
  A2A9W7 ENTREZGENE, UniProtKB/TrEMBL
  GGA3_MOUSE UniProtKB/Swiss-Prot
  Q3V1Y0 ENTREZGENE
  Q80U71 ENTREZGENE
  Q8BMI3 ENTREZGENE
  S4R2D2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q3V1Y0 UniProtKB/Swiss-Prot
  Q80U71 UniProtKB/Swiss-Prot