Sncaip (synuclein, alpha interacting protein (synphilin)) - Rat Genome Database

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Gene: Sncaip (synuclein, alpha interacting protein (synphilin)) Mus musculus
Analyze
Symbol: Sncaip
Name: synuclein, alpha interacting protein (synphilin)
RGD ID: 1319546
MGI Page MGI
Description: Predicted to enable identical protein binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in dopamine metabolic process; regulation of inclusion body assembly; and regulation of neurotransmitter secretion. Predicted to be located in cytoplasmic ribonucleoprotein granule and nucleoplasm. Is expressed in several structures, including alimentary system; branchial arch; cerebral cortex; genitourinary system; and ureter. Orthologous to human SNCAIP (synuclein alpha interacting protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810407O15Rik; 4933427B05Rik; alpha-synuclein-interacting protein; BB104594; MGC107459; synp; synphilin-1; SYP; SYPH1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391852,900,872 - 53,049,007 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1852,900,781 - 53,049,007 (+)EnsemblGRCm39 Ensembl
GRCm381852,767,811 - 52,915,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1852,767,709 - 52,915,935 (+)EnsemblGRCm38mm10GRCm38
MGSCv371852,927,363 - 53,075,584 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361852,893,462 - 53,040,681 (+)NCBIMGSCv36mm8
Celera1854,086,678 - 54,232,635 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1828.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11958831   PMID:12477932   PMID:12930822   PMID:16141072   PMID:16141073   PMID:18023262   PMID:18287559   PMID:19730898   PMID:19760259  
PMID:19857556   PMID:20059953   PMID:20185556   PMID:21267068   PMID:21386911   PMID:21677750   PMID:21873635   PMID:21931791   PMID:22158267   PMID:23284848   PMID:24064336   PMID:24902662  
PMID:24947141   PMID:25886189   PMID:25917213   PMID:26569394   PMID:26697752   PMID:26797281   PMID:27466341   PMID:27741433   PMID:27818201   PMID:28621812   PMID:28870519   PMID:29124353  
PMID:29747690   PMID:30966771   PMID:30987677   PMID:31683259   PMID:31722091   PMID:32502569   PMID:33378226   PMID:33926043   PMID:34321999   PMID:34595918   PMID:35773260   PMID:35830804  


Genomics

Comparative Map Data
Sncaip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391852,900,872 - 53,049,007 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1852,900,781 - 53,049,007 (+)EnsemblGRCm39 Ensembl
GRCm381852,767,811 - 52,915,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1852,767,709 - 52,915,935 (+)EnsemblGRCm38mm10GRCm38
MGSCv371852,927,363 - 53,075,584 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361852,893,462 - 53,040,681 (+)NCBIMGSCv36mm8
Celera1854,086,678 - 54,232,635 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1828.27NCBI
SNCAIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385122,311,353 - 122,464,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5122,311,354 - 122,464,219 (+)EnsemblGRCh38hg38GRCh38
GRCh375121,647,386 - 121,799,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365121,675,719 - 121,827,693 (+)NCBINCBI36Build 36hg18NCBI36
Build 345121,675,831 - 121,827,648NCBI
Celera5117,600,701 - 117,753,238 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5116,834,697 - 116,986,649 (+)NCBIHuRef
CHM1_15121,080,421 - 121,232,412 (+)NCBICHM1_1
T2T-CHM13v2.05122,828,188 - 122,981,079 (+)NCBIT2T-CHM13v2.0
Sncaip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81848,402,164 - 48,542,246 (+)NCBIGRCr8
mRatBN7.21846,205,846 - 46,343,932 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1846,207,152 - 46,343,929 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1848,257,319 - 48,394,034 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01848,969,756 - 49,106,571 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01846,763,218 - 46,899,927 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01847,739,284 - 47,877,679 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1847,739,140 - 47,877,676 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01846,953,856 - 47,092,057 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41848,122,804 - 48,259,575 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11848,227,495 - 48,291,366 (+)NCBI
Celera1844,394,529 - 44,531,368 (+)NCBICelera
Cytogenetic Map18q11NCBI
Sncaip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955521482,433 - 548,751 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955521410,270 - 548,691 (+)NCBIChiLan1.0ChiLan1.0
SNCAIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24117,581,707 - 117,736,695 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15115,735,370 - 115,890,358 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05117,692,836 - 117,847,221 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15123,476,664 - 123,630,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5123,555,073 - 123,630,921 (+)Ensemblpanpan1.1panPan2
SNCAIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,226,940 - 12,375,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,301,719 - 12,375,560 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,008,224 - 11,159,094 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,931,642 - 13,082,653 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,932,537 - 13,080,751 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11111,672,709 - 11,823,503 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,489,633 - 11,640,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,120,329 - 12,271,518 (+)NCBIUU_Cfam_GSD_1.0
Sncaip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213134,646,219 - 134,792,294 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365752,727,201 - 2,872,889 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365752,727,253 - 2,873,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNCAIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2125,811,459 - 125,956,862 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12125,889,165 - 125,956,864 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22131,097,461 - 131,120,771 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNCAIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12325,397,944 - 25,545,185 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2325,398,534 - 25,545,962 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603452,671,118 - 52,818,362 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sncaip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477419,702,565 - 19,827,374 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477419,702,884 - 19,853,952 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sncaip
4829 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3377
Count of miRNA genes:553
Interacting mature miRNAs:667
Transcripts:ENSMUST00000025413, ENSMUST00000115410, ENSMUST00000163742, ENSMUST00000177861, ENSMUST00000178011, ENSMUST00000178678, ENSMUST00000178883, ENSMUST00000179038, ENSMUST00000179625, ENSMUST00000179689, ENSMUST00000180259
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
10412184Sstapa1_mSuseptibility to Staphylococus aureus infection 1 (mouse)Not determined184654154657590708Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185043306762633071Mouse

Markers in Region
BB104594  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381852,915,615 - 52,915,722UniSTSGRCm38
MGSCv371853,075,269 - 53,075,376UniSTSGRCm37
Celera1854,232,320 - 54,232,427UniSTS
Cytogenetic Map18D1UniSTS
Whitehead/MRC_RH18728.16UniSTS
48.MMHAP79FLH6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381852,781,929 - 52,782,126UniSTSGRCm38
MGSCv371852,941,583 - 52,941,780UniSTSGRCm37
Celera1854,098,651 - 54,098,848UniSTS
Cytogenetic Map18D1UniSTS
Whitehead_YAC18 UniSTS
D18Mit53  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381852,833,084 - 52,833,226UniSTSGRCm38
MGSCv371852,992,738 - 52,992,880UniSTSGRCm37
Celera1854,149,861 - 54,149,989UniSTS
Cytogenetic Map18D1UniSTS
cM Map1827.0UniSTS
Whitehead Genetic1816.4UniSTS
Whitehead/MRC_RH18730.38UniSTS
Whitehead_YAC18 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001199151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF348447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB669757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC152544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000025413   ⟹   ENSMUSP00000025413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,901,066 - 53,049,007 (+)Ensembl
GRCm38.p6 Ensembl1852,767,994 - 52,915,935 (+)Ensembl
Ensembl Acc Id: ENSMUST00000115410   ⟹   ENSMUSP00000111069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,900,781 - 53,048,936 (+)Ensembl
GRCm38.p6 Ensembl1852,767,709 - 52,915,864 (+)Ensembl
Ensembl Acc Id: ENSMUST00000163742   ⟹   ENSMUSP00000127189
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,901,162 - 53,048,814 (+)Ensembl
GRCm38.p6 Ensembl1852,768,090 - 52,915,742 (+)Ensembl
Ensembl Acc Id: ENSMUST00000177861   ⟹   ENSMUSP00000136021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,971,036 - 53,048,658 (+)Ensembl
GRCm38.p6 Ensembl1852,837,964 - 52,915,586 (+)Ensembl
Ensembl Acc Id: ENSMUST00000178011   ⟹   ENSMUSP00000137549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,901,193 - 53,048,685 (+)Ensembl
GRCm38.p6 Ensembl1852,768,121 - 52,915,613 (+)Ensembl
Ensembl Acc Id: ENSMUST00000178678   ⟹   ENSMUSP00000137367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,900,782 - 53,049,002 (+)Ensembl
GRCm38.p6 Ensembl1852,767,710 - 52,915,930 (+)Ensembl
Ensembl Acc Id: ENSMUST00000178883   ⟹   ENSMUSP00000136200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,971,036 - 53,048,951 (+)Ensembl
GRCm38.p6 Ensembl1852,837,964 - 52,915,879 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179038   ⟹   ENSMUSP00000137201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,901,804 - 52,971,112 (+)Ensembl
GRCm38.p6 Ensembl1852,768,732 - 52,838,040 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179625   ⟹   ENSMUSP00000136838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,971,082 - 53,048,384 (+)Ensembl
GRCm38.p6 Ensembl1852,838,010 - 52,915,312 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179689   ⟹   ENSMUSP00000137107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,971,082 - 53,048,384 (+)Ensembl
GRCm38.p6 Ensembl1852,838,010 - 52,915,312 (+)Ensembl
Ensembl Acc Id: ENSMUST00000180259   ⟹   ENSMUSP00000137282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1852,971,036 - 53,048,951 (+)Ensembl
GRCm38.p6 Ensembl1852,837,964 - 52,915,879 (+)Ensembl
RefSeq Acc Id: NM_001199151   ⟹   NP_001186080
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391852,900,872 - 53,049,007 (+)NCBI
GRCm381852,767,811 - 52,915,931 (+)NCBI
Celera1854,086,780 - 54,232,636 (+)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001199153   ⟹   NP_001186082
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391852,901,066 - 53,049,007 (+)NCBI
GRCm381852,768,093 - 52,915,931 (+)NCBI
Celera1854,086,780 - 54,232,636 (+)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001199154   ⟹   NP_001186083
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391852,901,305 - 53,049,007 (+)NCBI
GRCm381852,768,144 - 52,915,931 (+)NCBI
Celera1854,086,780 - 54,232,636 (+)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001403646   ⟹   NP_001390575
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391852,901,066 - 53,049,007 (+)NCBI
RefSeq Acc Id: NM_001403647   ⟹   NP_001390576
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391852,901,305 - 53,049,007 (+)NCBI
RefSeq Acc Id: NM_001403648   ⟹   NP_001390577
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391852,901,305 - 53,049,007 (+)NCBI
RefSeq Acc Id: NM_026408   ⟹   NP_080684
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391852,900,872 - 53,049,007 (+)NCBI
GRCm381852,767,811 - 52,915,931 (+)NCBI
MGSCv371852,927,363 - 53,075,584 (+)RGD
Celera1854,086,780 - 54,232,636 (+)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017317971   ⟹   XP_017173460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391852,901,161 - 53,049,007 (+)NCBI
GRCm381852,768,089 - 52,915,935 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001186080 (Get FASTA)   NCBI Sequence Viewer  
  NP_001186082 (Get FASTA)   NCBI Sequence Viewer  
  NP_001186083 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390575 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390576 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390577 (Get FASTA)   NCBI Sequence Viewer  
  NP_080684 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173460 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98489 (Get FASTA)   NCBI Sequence Viewer  
  AAI30226 (Get FASTA)   NCBI Sequence Viewer  
  AAK30156 (Get FASTA)   NCBI Sequence Viewer  
  BAB30511 (Get FASTA)   NCBI Sequence Viewer  
  BAB30548 (Get FASTA)   NCBI Sequence Viewer  
  BAC32166 (Get FASTA)   NCBI Sequence Viewer  
  BAC38405 (Get FASTA)   NCBI Sequence Viewer  
  BAE21118 (Get FASTA)   NCBI Sequence Viewer  
  BAE35635 (Get FASTA)   NCBI Sequence Viewer  
  EDL09916 (Get FASTA)   NCBI Sequence Viewer  
  EDL09917 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000025413
  ENSMUSP00000025413.7
  ENSMUSP00000111069.3
  ENSMUSP00000127189
  ENSMUSP00000127189.3
  ENSMUSP00000136021.2
  ENSMUSP00000136200.2
  ENSMUSP00000136838
  ENSMUSP00000136838.2
  ENSMUSP00000137107.2
  ENSMUSP00000137201.2
  ENSMUSP00000137282.2
  ENSMUSP00000137367
  ENSMUSP00000137367.2
  ENSMUSP00000137549
  ENSMUSP00000137549.2
GenBank Protein Q99ME3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_080684   ⟸   NM_026408
- Peptide Label: isoform 2
- UniProtKB: E9Q4E2 (UniProtKB/TrEMBL),   Q3V1N2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186080   ⟸   NM_001199151
- Peptide Label: isoform 1
- UniProtKB: Q4KMM4 (UniProtKB/TrEMBL),   G5E848 (UniProtKB/TrEMBL),   Q3TVI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186082   ⟸   NM_001199153
- Peptide Label: isoform 1
- UniProtKB: Q4KMM4 (UniProtKB/TrEMBL),   G5E848 (UniProtKB/TrEMBL),   Q3TVI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186083   ⟸   NM_001199154
- Peptide Label: isoform 2
- UniProtKB: E9Q4E2 (UniProtKB/TrEMBL),   Q3V1N2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173460   ⟸   XM_017317971
- Peptide Label: isoform X2
- UniProtKB: J3QNK1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000137549   ⟸   ENSMUST00000178011
Ensembl Acc Id: ENSMUSP00000137367   ⟸   ENSMUST00000178678
Ensembl Acc Id: ENSMUSP00000136200   ⟸   ENSMUST00000178883
Ensembl Acc Id: ENSMUSP00000127189   ⟸   ENSMUST00000163742
Ensembl Acc Id: ENSMUSP00000136021   ⟸   ENSMUST00000177861
Ensembl Acc Id: ENSMUSP00000137107   ⟸   ENSMUST00000179689
Ensembl Acc Id: ENSMUSP00000136838   ⟸   ENSMUST00000179625
Ensembl Acc Id: ENSMUSP00000137201   ⟸   ENSMUST00000179038
Ensembl Acc Id: ENSMUSP00000111069   ⟸   ENSMUST00000115410
Ensembl Acc Id: ENSMUSP00000025413   ⟸   ENSMUST00000025413
Ensembl Acc Id: ENSMUSP00000137282   ⟸   ENSMUST00000180259
RefSeq Acc Id: NP_001390575   ⟸   NM_001403646
- Peptide Label: isoform 3
- UniProtKB: J3QNK1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001390577   ⟸   NM_001403648
- Peptide Label: isoform 1
- UniProtKB: G5E848 (UniProtKB/TrEMBL),   Q3TVI3 (UniProtKB/TrEMBL),   Q4KMM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001390576   ⟸   NM_001403647
- Peptide Label: isoform 1
- UniProtKB: G5E848 (UniProtKB/TrEMBL),   Q3TVI3 (UniProtKB/TrEMBL),   Q4KMM4 (UniProtKB/TrEMBL)
Protein Domains
Synphilin-1 alpha-Synuclein-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99ME3-F1-model_v2 AlphaFold Q99ME3 1-962 view protein structure

Promoters
RGD ID:13677800
Promoter ID:EPDNEW_M23049
Type:multiple initiation site
Name:Sncaip_2
Description:Mus musculus synuclein, alpha interacting protein , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23050  EPDNEW_M23051  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381852,767,714 - 52,767,774EPDNEW
RGD ID:13677802
Promoter ID:EPDNEW_M23050
Type:initiation region
Name:Sncaip_1
Description:Mus musculus synuclein, alpha interacting protein , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23049  EPDNEW_M23051  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381852,768,140 - 52,768,200EPDNEW
RGD ID:13677804
Promoter ID:EPDNEW_M23051
Type:initiation region
Name:Sncaip_3
Description:Mus musculus synuclein, alpha interacting protein , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23049  EPDNEW_M23050  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381852,768,403 - 52,768,463EPDNEW
RGD ID:6829271
Promoter ID:MM_KWN:25290
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:AK042895_GM5078,   NM_026408,   UC008EXN.1,   UC008EXO.1,   UC008EXP.1,   UC008EXQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361852,927,586 - 52,928,086 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915097 AgrOrtholog
Ensembl Genes ENSMUSG00000024534 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025413 ENTREZGENE
  ENSMUST00000025413.14 UniProtKB/TrEMBL
  ENSMUST00000115410.9 UniProtKB/TrEMBL
  ENSMUST00000163742 ENTREZGENE
  ENSMUST00000163742.9 UniProtKB/TrEMBL
  ENSMUST00000177861.8 UniProtKB/TrEMBL
  ENSMUST00000178011 ENTREZGENE
  ENSMUST00000178011.8 UniProtKB/TrEMBL
  ENSMUST00000178678 ENTREZGENE
  ENSMUST00000178678.8 UniProtKB/TrEMBL
  ENSMUST00000178883.8 UniProtKB/TrEMBL
  ENSMUST00000179038.2 UniProtKB/TrEMBL
  ENSMUST00000179625 ENTREZGENE
  ENSMUST00000179625.8 UniProtKB/TrEMBL
  ENSMUST00000179689.2 UniProtKB/TrEMBL
  ENSMUST00000180259.8 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.750 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNCAIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNCAIP_SNCA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67847 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1915097 ENTREZGENE
NCBI Gene 67847 ENTREZGENE
PANTHER PTHR22882 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNPHILIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNCAIP_SNCA_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sncaip PhenoGen
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDC8_MOUSE UniProtKB/TrEMBL
  E9Q4E2 ENTREZGENE, UniProtKB/TrEMBL
  G5E848 ENTREZGENE, UniProtKB/TrEMBL
  J3KMU0_MOUSE UniProtKB/TrEMBL
  J3QNK1 ENTREZGENE, UniProtKB/TrEMBL
  J3QP58_MOUSE UniProtKB/TrEMBL
  J3QPG2_MOUSE UniProtKB/TrEMBL
  Q3TVI3 ENTREZGENE, UniProtKB/TrEMBL
  Q3V1N2 ENTREZGENE, UniProtKB/TrEMBL
  Q4KMM4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BRF4_MOUSE UniProtKB/TrEMBL
  Q8C4I8_MOUSE UniProtKB/TrEMBL
  Q99ME3 ENTREZGENE
  Q9D3W0_MOUSE UniProtKB/TrEMBL
  Q9D3Y6_MOUSE UniProtKB/TrEMBL
  SNCAP_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2BDD1 UniProtKB/Swiss-Prot