Wdr5b (WD repeat domain 5B) - Rat Genome Database

Name: Wdr5b
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Wdr5b (WD repeat domain 5B) Mus musculus

Analyze

Symbol:

Wdr5b

Name:

WD repeat domain 5B

RGD ID:

1318415

MGI Page

MGI

Description:

Predicted to enable histone binding activity. Predicted to be part of Set1C/COMPASS complex. Orthologous to human WDR5B (WD repeat domain 5B).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

2310009C03Rik; AI606931; WD repeat-containing protein 5B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR5B (WD repeat domain 5B)	HGNC	Ensembl, HGNC, HomoloGene, NCBI, OMA, OrthoMCL, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Wdr5b (WD repeat domain 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wdr5b (WD repeat domain 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR5B (WD repeat domain 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR5B (WD repeat domain 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wdr5b (WD repeat domain 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR5B (WD repeat domain 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WDR5B (WD repeat domain 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr5b (WD repeat domain 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	WDR5 (WD repeat domain 5)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Wdr5b (WD repeat domain 5B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	WDR5B (WD repeat domain 5B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	wdr5 (WD repeat domain 5)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	SWD3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	wdr-5.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	wdr-5.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	wds	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	wdr5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	35,861,560 - 35,863,344 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	35,861,560 - 35,864,298 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	36,041,190 - 36,042,974 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	36,041,190 - 36,043,928 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	36,041,276 - 36,043,060 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	35,960,937 - 35,962,721 (+)	NCBI		MGSCv36	mm8
Celera	16	36,521,798 - 36,523,582 (+)	NCBI		Celera
Cytogenetic Map	16	B3	NCBI
cM Map	16	25.43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alkaptonuria (ISO)

familial hypocalciuric hypercalcemia (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

4,4'-diaminodiphenylmethane (EXP)

aristolochic acid A (ISO)

avobenzone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

choline (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dioxygen (EXP)

elemental selenium (ISO)

folic acid (EXP)

formaldehyde (ISO)

gentamycin (ISO)

L-methionine (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

paracetamol (ISO)

potassium chloride (ISO)

quercetin (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium dodecyl sulfate (ISO)

Soman (ISO)

tebuconazole (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

triphenyl phosphate (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

Set1C/COMPASS complex (IBA)

Molecular Function

histone binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:15489334	PMID:16141072	PMID:16141073	PMID:17041588	PMID:21677750	PMID:21873635

Genomics

Comparative Map Data

Wdr5b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	35,861,560 - 35,863,344 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	35,861,560 - 35,864,298 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	36,041,190 - 36,042,974 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	36,041,190 - 36,043,928 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	36,041,276 - 36,043,060 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	35,960,937 - 35,962,721 (+)	NCBI		MGSCv36	mm8
Celera	16	36,521,798 - 36,523,582 (+)	NCBI		Celera
Cytogenetic Map	16	B3	NCBI
cM Map	16	25.43	NCBI

WDR5B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	122,411,846 - 122,416,062 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	122,411,846 - 122,416,062 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	122,130,693 - 122,134,909 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	123,613,390 - 123,617,572 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	123,613,389 - 123,617,572	NCBI
Celera	3	120,540,328 - 120,544,510 (-)	NCBI		Celera
Cytogenetic Map	3	q21.1	NCBI
HuRef	3	119,504,011 - 119,508,193 (-)	NCBI		HuRef
CHM1_1	3	122,094,185 - 122,098,367 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	125,131,401 - 125,135,617 (-)	NCBI		T2T-CHM13v2.0

Wdr5b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	78,216,266 - 78,218,125 (-)	NCBI		GRCr8
mRatBN7.2	11	64,710,945 - 64,712,804 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	64,710,355 - 64,712,807 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	73,536,288 - 73,538,147 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	66,198,550 - 66,200,409 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	65,229,798 - 65,231,657 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	67,645,959 - 67,647,818 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	67,645,965 - 67,647,818 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	70,733,436 - 70,735,295 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	66,546,008 - 66,547,867 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	66,603,598 - 66,605,456 (-)	NCBI
Celera	11	64,176,936 - 64,178,795 (-)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

Wdr5b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	21,698,917 - 21,699,888 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	21,698,766 - 21,700,390 (-)	NCBI	ChiLan1.0	ChiLan1.0

WDR5B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	120,357,926 - 120,361,745 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	120,360,418 - 120,366,525 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	119,503,001 - 119,506,814 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	126,408,696 - 126,412,482 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	126,410,902 - 126,411,894 (-)	Ensembl	panpan1.1		panPan2

WDR5B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	25,554,218 - 25,557,025 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	25,555,419 - 25,556,408 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	25,578,548 - 25,581,379 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	25,789,314 - 25,792,140 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	25,789,314 - 25,792,105 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	25,586,303 - 25,589,137 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	25,629,685 - 25,632,491 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	26,187,207 - 26,190,033 (-)	NCBI		UU_Cfam_GSD_1.0

Wdr5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	128,787,032 - 128,794,125 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936536	8,728,735 - 8,730,367 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936536	8,727,881 - 8,731,067 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR5B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	138,109,848 - 138,113,646 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	138,109,758 - 138,113,638 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	147,720,711 - 147,723,427 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR5B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	58,444,586 - 58,446,316 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	58,445,149 - 58,446,141 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	107,895,882 - 107,899,147 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wdr5b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624912	764,076 - 766,647 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624912	762,893 - 766,690 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Wdr5b
47 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	184
Count of miRNA genes:	149
Interacting mature miRNAs:	171
Transcripts:	ENSMUST00000042203
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11059560	Lmr12b_m	leishmaniasis resistance 12b (mouse)					16	28792813	62792952	Mouse
26884376	Skwq4_m	skull length QTL 4, 5 week (mouse)					16	8417864	90896888	Mouse
1301841	Lrnx9_m	learning-contextual 9 (mouse)			Not determined		16	12225360	46225471	Mouse
1302096	Aod1a_m	autoimmune ovarian dysgenesis 1a (mouse)			Not determined		16	35446643	92573008	Mouse
4141179	Ipng3_m	imprinted postnatal growth 3 (mouse)			Not determined			22775252	57594076	Mouse
38501069	Tip4_m	tuberculosis immunophenotype 4, IFN-g level (mouse)					16	4317864	44520363	Mouse
26884432	Zlq7_m	zygomatic length QTL 7, 10 week (mouse)					16	3817864	64620363	Mouse
11049571	Lmr12c_m	leishmaniasis resistance 12c (mouse)					16	28792813	62792952	Mouse
1301086	Lprm5_m	lymphoproliferation modifier 5 (mouse)			Not determined		16	11848824	45848923	Mouse
27226768	Tibl9_m	tibia length 9, 5 week (mouse)					16	3317864	51420363	Mouse
11059559	Lmr12a_m	leishmaniasis resistance 12a (mouse)					16	28792813	62792952	Mouse
1301443	Mopkd2_m	modifier of polycystic kidney disease progression 2 (mouse)			Not determined		16	4646314	38646414	Mouse
10043978	Obq35_m	obesity QTL 35 (mouse)			Not determined		16	9881631	43881631	Mouse
25671380	Hrsq2_m	host response to SARS QTL 2, titer (mouse)					16	31402501	36540273	Mouse
4142187	Arrd3_m	age-related retinal degeneration 3 (mouse)			Not determined			32522909	65466552	Mouse
1357763	Lp1_m	lymphocyte proliferation 1 (mouse)			Not determined		16	6542979	65466552	Mouse
1357517	Bwtn1_m	body weight at necropsy 1 (mouse)			Not determined		16	20019329	85600826	Mouse
1300943	Skts9_m	skin tumor susceptibility 9 (mouse)			Not determined		16	5775252	39775440	Mouse
1301070	Cypr1_m	cytokine production 1 (mouse)			Not determined		16	32312795	66312933	Mouse
1300915	Lmr12_m	leishmaniasis resistance 12 (mouse)			Not determined		16	28792813	62792952	Mouse
1300656	Bgeq15_m	body growth early QTL 15 (mouse)			Not determined		16	5775252	39775440	Mouse
4142236	Pstc4_m	periosteal circumference 4 (mouse)			Not determined		16	15522909	49523112	Mouse
1300534	Bmd15_m	bone mineral density 15 (mouse)			Not determined		16	21938383	55938574	Mouse
11251724	Ewc6_m	ethanol withdrawal and consumption 6 (mouse)					16	8226052	42226052	Mouse
1300987	Skull23_m	skull morphology 23 (mouse)			Not determined		16	5775252	39775440	Mouse
1301945	Skl7_m	skeletal size (tail length) 7 (mouse)			Not determined		16	5775252	39775440	Mouse
10045614	Rapop6_m	radiation-induced apoptosis 6 (mouse)			Not determined		16	14802921	48803032	Mouse
15092062	Egrme4_m	early growth rate, maternal effect 4 (mouse)					16	25218664	44220250	Mouse
27095908	Scvln7_m	sacral vertebrae length 2, 5 week (mouse)					16	3317864	39820362	Mouse
27226785	Feml12_m	femur length 12, 5 week (mouse)					16	3317864	64620363	Mouse

Markers in Region

AI606931

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	16	36,042,736 - 36,042,826	UniSTS	GRCm38
MGSCv37	16	36,042,822 - 36,042,912	UniSTS	GRCm37
Celera	16	36,523,344 - 36,523,434	UniSTS
Cytogenetic Map	16	B3	UniSTS
Whitehead/MRC_RH	16	346.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_027113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK009247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK165100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC064045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT573031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF011616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000042203 ⟹ ENSMUSP00000040852

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	35,861,560 - 35,864,298 (+)	Ensembl
GRCm38.p6 Ensembl	16	36,041,190 - 36,043,928 (+)	Ensembl

RefSeq Acc Id:

NM_027113 ⟹ NP_081389

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	35,861,560 - 35,863,344 (+)	NCBI
GRCm38	16	36,041,190 - 36,042,974 (+)	ENTREZGENE
MGSCv37	16	36,041,276 - 36,043,060 (+)	RGD
Celera	16	36,521,798 - 36,523,582 (+)	RGD
cM Map	16		ENTREZGENE

Sequence:

show sequence

GTGTGACGTCATCTGTTGCTTGAGGTTCCCAGACATTTTGGAGCTGCGGAGGGCGTGGAAGAGG
AAAGGTGCAGCCCCGAACCCCCGCGGATCGGCCTAGTCCTTTGACAGCATCTGACACGAGTACG
GATCCCAGGATCACTGTGATCCGTGATGCTATAGAAGAAAGCAAGACGGGGAGTGGTTCAAACT
TCGTTGCTGACTGGGAACGGACCTTATAGAGGAGCCCATGTTACAATCAAAACCATCCGCCTTC
CAACCGCAAGTTTTAACTTCTGTAAGTTTCAGGGCGGGAAGCCCGCGCAAATTATAGAGCCGGA
TCTATGGCGACCGAGCATCTGCCAGCAGAGAGAGCACAGTCACTTCTCTCTGCCCCCCGGCGCG
AGGAAGAGCCGCAGAAACCCAACTATGCTCTCAGACTTACTCTTGCGGGGCACTCGGCGGCCAT
ATCATCAGTTAAATTTAGTCCTAATGGCGAATGGCTAGCGAGTTCTGCAGCTGATGCACTAATT
ATAATTTGGGGAGCATACGATGGGAATTGTAAGAAAACACTCTATGGTCACAGTCTGGAAATAT
CAGATGTTGCCTGGTCTTCAGATTCTAGTCGTCTAGTTTCAGCCTCAGATGATAAGACTCTAAA
GGTATGGGATATGAGATCTGGAAAATGTCTGAAAACACTGAAGGGGCACAGCGATTTCGTCTTC
TGTTGTGACTTCAACCCACCATCCAACCTCATCGTTTCGGGCTCTTTTGATGAGAGTGTGAAAA
TATGGGAAGTAAAAACAGGAAAATGCCTCAAGACTTTGTCTGCACATTCGGACCCCATTTCTGC
CGTAAATTTTAATTGTAATGGGTCCTTGATAGTGTCCGGGAGCTATGATGGGCTTTGTAGAATT
TGGGATGCTGCGTCAGGCCAGTGTTTAAGGACACTTGCTGATGAAGGCAACCCTCCAGTGTCTT
TTGTAAAATTTTCTCCAAATGGTAAATACATTCTCACTGCAACTTTGGACAATACTCTTAAACT
GTGGGATTACAGCAGGGGCAGATGCCTGAAGACATACACTGGTCATAAGAATGAGAAATACTGC
CTATTTGCCAGTTTCTCGGTTACTGGTAGAAAGTGGGTTGTGTCTGGTTCAGAGGACAACATGG
TTTACATCTGGAATCTTCAGACTAAAGAGATTGTACAGAGGTTGCAAGGTCACACAGATGTGGT
GATCTCAGCAGCCTGTCACCCTACAAAAAACATCATCGCATCAGCAGCACTAGAAAATGACAAG
ACAATTAAAGTGTGGTCGAGTGACTGCTGAAGTCTCTGGCAGGCGATGAGGAAAGCCAAGTTAG
ACACAAAATCCAAAGGATGGTCTCTCTGGATTCTGGCAAAGCTTAAACTGTCCTTGAGTCTGAA
TCATCTTACTTTGCAAAGTGAGACCCTTGTAAAAACAGGTCTAGGACTTAGGGCTTGTGAATCC
TAGTCTTGAGGCCTGCTAGGAATCTCCTGTGCTCACCCCTGGACAGAGCCTCATTCTTTCACTG
GCTTTCCCAGGGGGGTAAGGTTTTTGGAATATCTGGAAAGGTGACACAACAGGATGACCCAGGG
GAGGAGGGACGTGTAGCCTCTGGTTTGGGAGGTCATTAAGGGCAGTGACATTAGGGAGGCAATG
AGAGGATTGGAGACATTTTACATGTCACTTGTATATTTTTGTTATTCAATATGATTGGGCATCA
AATTGCCAAATTAATCTGTCAAGTTGGGGACAATAAATCATGGTCCGGTTTGTTCTAAAAAAAA
AAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_081389	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH64045	(Get FASTA)	NCBI Sequence Viewer
	ABK41106	(Get FASTA)	NCBI Sequence Viewer
	BAB26165	(Get FASTA)	NCBI Sequence Viewer
	BAE28955	(Get FASTA)	NCBI Sequence Viewer
	BAE38035	(Get FASTA)	NCBI Sequence Viewer
	EDK97905	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000040852
	ENSMUSP00000040852.9
GenBank Protein	Q9D7H2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_081389 ⟸ NM_027113

- UniProtKB:

Q9D7H2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MATEHLPAERAQSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALII
IWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFC
CDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIW
DAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCL
FASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKT
IKVWSSDC

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Ensembl Acc Id:

ENSMUSP00000040852 ⟸ ENSMUST00000042203

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9D7H2-F1-model_v2	AlphaFold	Q9D7H2	1-328	view protein structure

Promoters

RGD ID:

6827625

Promoter ID:

MM_KWN:20891

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_027113

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	16	36,040,556 - 36,042,852 (+)	MPROMDB

RGD ID:

8686098

Promoter ID:

EPDNEW_M21080

Type:

initiation region

Name:

Wdr5b_1

Description:

Mus musculus WD repeat domain 5B , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	36,041,286 - 36,041,346	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1916794	AgrOrtholog
Ensembl Genes	ENSMUSG00000034379	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000042203	ENTREZGENE
	ENSMUST00000042203.10	UniProtKB/Swiss-Prot
Gene3D-CATH	2.130.10.10	UniProtKB/Swiss-Prot
InterPro	G-protein_beta_WD-40_rep	UniProtKB/Swiss-Prot
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot
	WD40_repeat	UniProtKB/Swiss-Prot
	WD40_repeat_CS	UniProtKB/Swiss-Prot
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:69544	UniProtKB/Swiss-Prot
MGD	MGI:1916794	ENTREZGENE
NCBI Gene	69544	ENTREZGENE
PANTHER	WD REPEAT-CONTAINING PROTEIN 5B	UniProtKB/Swiss-Prot
	WD40 REPEAT PROTEIN	UniProtKB/Swiss-Prot
Pfam	WD40	UniProtKB/Swiss-Prot
PhenoGen	Wdr5b	PhenoGen
PIRSF	GN-bd_beta	UniProtKB/Swiss-Prot
PRINTS	GPROTEINBRPT	UniProtKB/Swiss-Prot
PROSITE	WD_REPEATS_1	UniProtKB/Swiss-Prot
	WD_REPEATS_2	UniProtKB/Swiss-Prot
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot
SMART	WD40	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot
UniProt	Q9D7H2	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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