RNF149 (ring finger protein 149) - Rat Genome Database

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Gene: RNF149 (ring finger protein 149) Homo sapiens
Analyze
Symbol: RNF149
Name: ring finger protein 149
RGD ID: 1318240
HGNC Page HGNC:23137
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within cellular response to xenobiotic stimulus; negative regulation of MAPK cascade; and regulation of protein stability. Located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA polymerase-transactivated protein 2; DNAPTP2; E3 ubiquitin-protein ligase RNF149; FLJ90504; RING-type E3 ubiquitin transferase RNF149
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382101,271,219 - 101,308,701 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2101,271,219 - 101,308,701 (-)EnsemblGRCh38hg38GRCh38
GRCh372101,892,063 - 101,925,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362101,258,985 - 101,291,584 (-)NCBINCBI36Build 36hg18NCBI36
Build 342101,351,070 - 101,383,670NCBI
Celera296,096,053 - 96,129,169 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef295,656,251 - 95,689,364 (-)NCBIHuRef
CHM1_12101,896,449 - 101,929,560 (-)NCBICHM1_1
T2T-CHM13v2.02101,729,922 - 101,767,398 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11076863   PMID:14702039   PMID:15489334   PMID:15489336   PMID:15815621   PMID:16344560   PMID:16381901   PMID:18029348   PMID:19322201   PMID:19946888   PMID:20686608   PMID:21873635  
PMID:22628551   PMID:23376485   PMID:26186194   PMID:28514442   PMID:29180619   PMID:29568061   PMID:33545068   PMID:33660365   PMID:33845483   PMID:33961781   PMID:34079125   PMID:34672954  
PMID:34709727   PMID:35271311   PMID:35696571   PMID:36610398   PMID:37031316   PMID:37410058  


Genomics

Comparative Map Data
RNF149
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382101,271,219 - 101,308,701 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2101,271,219 - 101,308,701 (-)EnsemblGRCh38hg38GRCh38
GRCh372101,892,063 - 101,925,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362101,258,985 - 101,291,584 (-)NCBINCBI36Build 36hg18NCBI36
Build 342101,351,070 - 101,383,670NCBI
Celera296,096,053 - 96,129,169 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef295,656,251 - 95,689,364 (-)NCBIHuRef
CHM1_12101,896,449 - 101,929,560 (-)NCBICHM1_1
T2T-CHM13v2.02101,729,922 - 101,767,398 (-)NCBIT2T-CHM13v2.0
Rnf149
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,590,375 - 39,616,885 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl139,590,377 - 39,616,486 (-)EnsemblGRCm39 Ensembl
GRCm38139,551,294 - 39,577,439 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,551,296 - 39,577,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv37139,608,141 - 39,634,192 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36139,495,847 - 39,521,951 (-)NCBIMGSCv36mm8
Celera139,345,843 - 39,371,852 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map118.33NCBI
Rnf149
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8949,322,524 - 49,350,361 (-)NCBIGRCr8
mRatBN7.2941,826,825 - 41,854,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl941,830,233 - 41,854,279 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0946,285,546 - 46,309,692 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,286,657 - 46,309,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0945,970,740 - 45,998,478 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4938,623,812 - 38,647,344 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1938,624,617 - 38,666,917 (-)NCBI
Celera939,579,130 - 39,603,686 (-)NCBICelera
Cytogenetic Map9q22NCBI
Rnf149
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554707,051,552 - 7,074,187 (-)NCBIChiLan1.0ChiLan1.0
RNF149
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,916,627 - 26,954,887 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A26,919,758 - 26,957,643 (+)NCBINHGRI_mPanPan1
PanPan1.12A102,246,631 - 102,282,593 (-)NCBIpanpan1.1PanPan1.1panPan2
RNF149
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11041,621,529 - 41,648,263 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1041,547,575 - 41,573,564 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01042,490,082 - 42,521,877 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1042,489,915 - 42,522,414 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11042,202,899 - 42,228,856 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01042,485,639 - 42,511,606 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01042,677,027 - 42,703,016 (+)NCBIUU_Cfam_GSD_1.0
Rnf149
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629291,030,865 - 91,060,241 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493671374,462 - 101,954 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493671374,126 - 102,051 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF149
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl353,032,631 - 53,060,333 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1353,032,432 - 53,067,354 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2355,578,363 - 55,613,065 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF149
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,978,429 - 5,011,117 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,979,126 - 5,011,083 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041172,644,948 - 172,677,669 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf149
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247495,982,313 - 6,002,221 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247495,975,844 - 6,002,422 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNF149
27 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q11.2-12.3(chr2:100378510-108472871)x3 copy number gain See cases [RCV000050836] Chr2:100378510..108472871 [GRCh38]
Chr2:100994972..109089327 [GRCh37]
Chr2:100361404..108455759 [NCBI36]
Chr2:2q11.2-12.3		 pathogenic
GRCh38/hg38 2q11.2(chr2:101080018-101646523)x3 copy number gain See cases [RCV000052668] Chr2:101080018..101646523 [GRCh38]
Chr2:101696480..102262985 [GRCh37]
Chr2:101062912..101629417 [NCBI36]
Chr2:2q11.2		 uncertain significance
GRCh38/hg38 2q11.1-12.1(chr2:94817406-103252396)x3 copy number gain See cases [RCV000052946] Chr2:94817406..103252396 [GRCh38]
Chr2:95618109..103868854 [GRCh37]
Chr2:94846878..103235286 [NCBI36]
Chr2:2q11.1-12.1		 pathogenic
GRCh38/hg38 2q11.2-13(chr2:97672522-110211318)x3 copy number gain See cases [RCV000052947] Chr2:97672522..110211318 [GRCh38]
Chr2:98288985..110968895 [GRCh37]
Chr2:97655417..110326184 [NCBI36]
Chr2:2q11.2-13		 pathogenic
GRCh38/hg38 2p11.2-q11.2(chr2:91443218-102334856)x3 copy number gain See cases [RCV000052945] Chr2:91443218..102334856 [GRCh38]
Chr2:91617683..102951316 [GRCh37]
Chr2:90981410..102317748 [NCBI36]
Chr2:2p11.2-q11.2		 pathogenic
GRCh38/hg38 2q11.2(chr2:99253497-101559639)x3 copy number gain See cases [RCV000136916] Chr2:99253497..101559639 [GRCh38]
Chr2:99869960..102176101 [GRCh37]
Chr2:99236392..101542533 [NCBI36]
Chr2:2q11.2		 uncertain significance
GRCh38/hg38 2q11.2(chr2:98411773-101636907)x1 copy number loss See cases [RCV000139206] Chr2:98411773..101636907 [GRCh38]
Chr2:99028236..102253369 [GRCh37]
Chr2:98394668..101619801 [NCBI36]
Chr2:2q11.2		 likely pathogenic
GRCh38/hg38 2q11.1-13(chr2:94678532-110602409)x3 copy number gain See cases [RCV000141075] Chr2:94678532..110602409 [GRCh38]
Chr2:95344257..111359986 [GRCh37]
Chr2:94707984..111076455 [NCBI36]
Chr2:2q11.1-13		 pathogenic
GRCh38/hg38 2q11.2(chr2:100705617-101466731)x3 copy number gain See cases [RCV000140755] Chr2:100705617..101466731 [GRCh38]
Chr2:101322079..102083193 [GRCh37]
Chr2:100688511..101449625 [NCBI36]
Chr2:2q11.2		 uncertain significance
GRCh38/hg38 2q11.2-12.2(chr2:100478285-106498909)x3 copy number gain See cases [RCV000141445] Chr2:100478285..106498909 [GRCh38]
Chr2:101094747..107115365 [GRCh37]
Chr2:100461179..106481797 [NCBI36]
Chr2:2q11.2-12.2		 uncertain significance
GRCh38/hg38 2q11.2-12.2(chr2:101234070-105679157)x1 copy number loss See cases [RCV000142969] Chr2:101234070..105679157 [GRCh38]
Chr2:101850532..106295614 [GRCh37]
Chr2:101216964..105662046 [NCBI36]
Chr2:2q11.2-12.2		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q11.1-12.3(chr2:95529039-108518266) copy number gain See cases [RCV000449270] Chr2:95529039..108518266 [GRCh37]
Chr2:2q11.1-12.3		 pathogenic
GRCh37/hg19 2q11.1-13(chr2:95327499-111370025)x4 copy number gain See cases [RCV000446842] Chr2:95327499..111370025 [GRCh37]
Chr2:2q11.1-13		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q11.1-12.2(chr2:95518497-107186127) copy number gain See cases [RCV000511158] Chr2:95518497..107186127 [GRCh37]
Chr2:2q11.1-12.2		 uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q11.2(chr2:101320204-102094813)x3 copy number gain See cases [RCV000511302] Chr2:101320204..102094813 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.193G>A (p.Gly65Ser) single nucleotide variant not specified [RCV004307097] Chr2:101308396 [GRCh38]
Chr2:101924858 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.475G>C (p.Val159Leu) single nucleotide variant not specified [RCV004318098] Chr2:101295167 [GRCh38]
Chr2:101911629 [GRCh37]
Chr2:2q11.2		 uncertain significance
Single allele deletion not provided [RCV000714264] Chr2:40608411..146900718 [GRCh37]
Chr2:2p22.1-q22.3		 likely pathogenic
GRCh37/hg19 2q11.1-13(chr2:96353030-114045463)x3 copy number gain not provided [RCV000682168] Chr2:96353030..114045463 [GRCh37]
Chr2:2q11.1-13		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
NM_173647.4(RNF149):c.976G>A (p.Val326Ile) single nucleotide variant not specified [RCV004292707] Chr2:101282042 [GRCh38]
Chr2:101898504 [GRCh37]
Chr2:2q11.2		 uncertain significance
GRCh37/hg19 2q11.2-12.2(chr2:101699537-106383710)x1 copy number loss not provided [RCV001827686] Chr2:101699537..106383710 [GRCh37]
Chr2:2q11.2-12.2		 uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2p25.1-q13(chr2:11504318-111365996)x1 copy number loss See cases [RCV002287563] Chr2:11504318..111365996 [GRCh37]
Chr2:2p25.1-q13		 pathogenic
NM_173647.4(RNF149):c.677G>A (p.Arg226His) single nucleotide variant not specified [RCV004074776] Chr2:101294965 [GRCh38]
Chr2:101911427 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.578A>G (p.Gln193Arg) single nucleotide variant not specified [RCV004106280] Chr2:101295064 [GRCh38]
Chr2:101911526 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.1105C>T (p.Pro369Ser) single nucleotide variant not specified [RCV004151053] Chr2:101281913 [GRCh38]
Chr2:101898375 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.444G>C (p.Leu148Phe) single nucleotide variant not specified [RCV004169600] Chr2:101308145 [GRCh38]
Chr2:101924607 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.171C>A (p.Ser57Arg) single nucleotide variant not specified [RCV004104759] Chr2:101308418 [GRCh38]
Chr2:101924880 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.464C>T (p.Thr155Ile) single nucleotide variant not specified [RCV004082576] Chr2:101295178 [GRCh38]
Chr2:101911640 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.775G>A (p.Glu259Lys) single nucleotide variant not specified [RCV004241104] Chr2:101294019 [GRCh38]
Chr2:101910481 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.733A>G (p.Lys245Glu) single nucleotide variant not specified [RCV004266410] Chr2:101294061 [GRCh38]
Chr2:101910523 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.770A>G (p.His257Arg) single nucleotide variant not specified [RCV004269117] Chr2:101294024 [GRCh38]
Chr2:101910486 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.474A>G (p.Ile158Met) single nucleotide variant not specified [RCV004296925] Chr2:101295168 [GRCh38]
Chr2:101911630 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.116C>T (p.Ser39Leu) single nucleotide variant not specified [RCV004315588] Chr2:101308473 [GRCh38]
Chr2:101924935 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.103C>T (p.Leu35Phe) single nucleotide variant not specified [RCV004340675] Chr2:101308486 [GRCh38]
Chr2:101924948 [GRCh37]
Chr2:2q11.2		 uncertain significance
GRCh37/hg19 2q11.1-11.2(chr2:95773428-102550061)x3 copy number gain not provided [RCV003484069] Chr2:95773428..102550061 [GRCh37]
Chr2:2q11.1-11.2		 likely pathogenic
NM_173647.4(RNF149):c.1148C>T (p.Thr383Met) single nucleotide variant not specified [RCV004446422] Chr2:101281870 [GRCh38]
Chr2:101898332 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.329T>C (p.Val110Ala) single nucleotide variant not specified [RCV004446425] Chr2:101308260 [GRCh38]
Chr2:101924722 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.356C>T (p.Thr119Ile) single nucleotide variant not specified [RCV004446426] Chr2:101308233 [GRCh38]
Chr2:101924695 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.43G>A (p.Val15Met) single nucleotide variant not specified [RCV004446427] Chr2:101308546 [GRCh38]
Chr2:101925008 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.64G>A (p.Ala22Thr) single nucleotide variant not specified [RCV004446428] Chr2:101308525 [GRCh38]
Chr2:101924987 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.731A>G (p.Lys244Arg) single nucleotide variant not specified [RCV004446431] Chr2:101294063 [GRCh38]
Chr2:101910525 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.724G>C (p.Glu242Gln) single nucleotide variant not specified [RCV004446430] Chr2:101294070 [GRCh38]
Chr2:101910532 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.1071C>G (p.Ser357Arg) single nucleotide variant not specified [RCV004446421] Chr2:101281947 [GRCh38]
Chr2:101898409 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.1184A>G (p.His395Arg) single nucleotide variant not specified [RCV004446423] Chr2:101277257 [GRCh38]
Chr2:101893719 [GRCh37]
Chr2:2q11.2		 likely benign
NM_173647.4(RNF149):c.592G>A (p.Gly198Ser) single nucleotide variant not specified [RCV004672115] Chr2:101295050 [GRCh38]
Chr2:101911512 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.697C>G (p.Gln233Glu) single nucleotide variant not specified [RCV004858412] Chr2:101294945 [GRCh38]
Chr2:101911407 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.589A>G (p.Ser197Gly) single nucleotide variant not specified [RCV004858413] Chr2:101295053 [GRCh38]
Chr2:101911515 [GRCh37]
Chr2:2q11.2		 uncertain significance
NM_173647.4(RNF149):c.52C>G (p.Leu18Val) single nucleotide variant not specified [RCV004858414] Chr2:101308537 [GRCh38]
Chr2:101924999 [GRCh37]
Chr2:2q11.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2195
Count of miRNA genes:1044
Interacting mature miRNAs:1254
Transcripts:ENST00000295317, ENST00000424632, ENST00000463726, ENST00000478404, ENST00000485752, ENST00000490553
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298432OSTEAR10_HOsteoarthritis QTL 10 (human)2.340.0001Joint/bone inflammationdistal interphalangeal joint osteoarthritis297592766106657498Human
597248033GWAS1344107_Hcomplement factor H-related protein 3 measurement QTL GWAS1344107 (human)0.000006complement factor H-related protein 3 measurement2101306418101306419Human
407020717GWAS669693_Hpancreatic carcinoma QTL GWAS669693 (human)0.000004pancreatic carcinoma2101305708101305709Human

Markers in Region
WI-15454  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372101,893,032 - 101,893,142UniSTSGRCh37
Build 362101,259,464 - 101,259,574RGDNCBI36
Celera296,097,022 - 96,097,132RGD
Cytogenetic Map2q11.2UniSTS
HuRef295,657,220 - 95,657,330UniSTS
GeneMap99-GB4 RH Map2356.78UniSTS
Whitehead-RH Map2522.2UniSTS
A008J47  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372101,923,407 - 101,923,506UniSTSGRCh37
Build 362101,289,839 - 101,289,938RGDNCBI36
Celera296,127,398 - 96,127,497RGD
Cytogenetic Map2q11.2UniSTS
HuRef295,687,593 - 95,687,692UniSTS
GeneMap99-GB4 RH Map2355.41UniSTS
RH48976  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372101,894,694 - 101,894,861UniSTSGRCh37
Build 362101,261,126 - 101,261,293RGDNCBI36
Celera296,098,683 - 96,098,850RGD
Cytogenetic Map2q11.2UniSTS
HuRef295,658,881 - 95,659,048UniSTS
G62124  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372101,898,362 - 101,898,498UniSTSGRCh37
Build 362101,264,794 - 101,264,930RGDNCBI36
Celera296,102,357 - 96,102,493RGD
Cytogenetic Map2q11.2UniSTS
HuRef295,662,555 - 95,662,691UniSTS
1152  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372101,892,384 - 101,892,470UniSTSGRCh37
Build 362101,258,816 - 101,258,902RGDNCBI36
Celera296,096,374 - 96,096,460RGD
Cytogenetic Map2q11.2UniSTS
HuRef295,656,572 - 95,656,658UniSTS
GeneMap99-GB4 RH Map2356.34UniSTS
STS-AA011533  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372101,897,980 - 101,898,225UniSTSGRCh37
Build 362101,264,412 - 101,264,657RGDNCBI36
Celera296,101,975 - 96,102,220RGD
Cytogenetic Map2q11.2UniSTS
HuRef295,662,173 - 95,662,418UniSTS
D11S3114  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7q21.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map10q11.1-q24UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic MapXq13.1-q21.1UniSTS
Cytogenetic Map20pter-q12UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map9p23UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q37.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map6p12UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map19qUniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map22q12.3-q13.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map19q11UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map1p32.2-p32.1UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map4q13.2UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map14q24.2UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4968 1726 2351 6 624 1949 465 2270 7304 6470 53 3728 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005263920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005263921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011510990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024452811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047443979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054341478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054341479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054341480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054341481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001738712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001738713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001738714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_244888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_922908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_922909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC013722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC073643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY450390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ782963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA383672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000295317   ⟹   ENSP00000295317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2101,275,601 - 101,308,701 (-)Ensembl
Ensembl Acc Id: ENST00000424632   ⟹   ENSP00000399090
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2101,271,222 - 101,308,701 (-)Ensembl
Ensembl Acc Id: ENST00000463726
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2101,281,859 - 101,286,503 (-)Ensembl
Ensembl Acc Id: ENST00000478404
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2101,288,708 - 101,294,662 (-)Ensembl
Ensembl Acc Id: ENST00000485752
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2101,271,219 - 101,272,936 (-)Ensembl
Ensembl Acc Id: ENST00000490553
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2101,281,493 - 101,286,107 (-)Ensembl
RefSeq Acc Id: NM_173647   ⟹   NP_775918
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,275,601 - 101,308,701 (-)NCBI
GRCh372101,887,681 - 101,925,178 (-)NCBI
Build 362101,258,985 - 101,291,584 (-)NCBI Archive
Celera296,096,053 - 96,129,169 (-)RGD
HuRef295,656,251 - 95,689,364 (-)ENTREZGENE
CHM1_12101,896,449 - 101,929,560 (-)NCBI
T2T-CHM13v2.02101,734,304 - 101,767,398 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005263920   ⟹   XP_005263977
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,277,636 - 101,308,701 (-)NCBI
GRCh372101,887,681 - 101,925,178 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005263921   ⟹   XP_005263978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,271,828 - 101,308,701 (-)NCBI
GRCh372101,887,681 - 101,925,178 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024452811   ⟹   XP_024308579
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,274,046 - 101,308,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047443979   ⟹   XP_047299935
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,281,859 - 101,308,701 (-)NCBI
RefSeq Acc Id: XM_054341478   ⟹   XP_054197453
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02101,736,339 - 101,767,398 (-)NCBI
RefSeq Acc Id: XM_054341479   ⟹   XP_054197454
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02101,730,531 - 101,767,398 (-)NCBI
RefSeq Acc Id: XM_054341480   ⟹   XP_054197455
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02101,732,051 - 101,767,398 (-)NCBI
RefSeq Acc Id: XM_054341481   ⟹   XP_054197456
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02101,740,562 - 101,767,398 (-)NCBI
RefSeq Acc Id: XR_001738712
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,271,219 - 101,308,701 (-)NCBI
Sequence:
RefSeq Acc Id: XR_008486330
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02101,729,922 - 101,767,398 (-)NCBI
RefSeq Acc Id: XR_008486331
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02101,729,922 - 101,767,398 (-)NCBI
RefSeq Acc Id: XR_008486332
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02101,747,720 - 101,767,398 (-)NCBI
RefSeq Acc Id: XR_922908
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,271,219 - 101,308,701 (-)NCBI
Sequence:
RefSeq Acc Id: XR_922909
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,289,017 - 101,308,701 (-)NCBI
Sequence:
RefSeq Acc Id: NP_775918   ⟸   NM_173647
- Peptide Label: precursor
- UniProtKB: Q8NBY5 (UniProtKB/Swiss-Prot),   Q8N5I8 (UniProtKB/Swiss-Prot),   Q53S14 (UniProtKB/Swiss-Prot),   Q8WUU3 (UniProtKB/Swiss-Prot),   Q8NC42 (UniProtKB/Swiss-Prot),   F8WCD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005263978   ⟸   XM_005263921
- Peptide Label: isoform X2
- UniProtKB: F8WCD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005263977   ⟸   XM_005263920
- Peptide Label: isoform X1
- UniProtKB: F8WCD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024308579   ⟸   XM_024452811
- Peptide Label: isoform X3
- UniProtKB: F8WCD0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000399090   ⟸   ENST00000424632
Ensembl Acc Id: ENSP00000295317   ⟸   ENST00000295317
RefSeq Acc Id: XP_047299935   ⟸   XM_047443979
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054197454   ⟸   XM_054341479
- Peptide Label: isoform X2
- UniProtKB: F8WCD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054197455   ⟸   XM_054341480
- Peptide Label: isoform X3
- UniProtKB: F8WCD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054197453   ⟸   XM_054341478
- Peptide Label: isoform X1
- UniProtKB: F8WCD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054197456   ⟸   XM_054341481
- Peptide Label: isoform X4
Protein Domains
PA   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8NC42-F1-model_v2 AlphaFold Q8NC42 1-400 view protein structure

Promoters
RGD ID:6798092
Promoter ID:HG_KWN:34161
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Lymphoblastoid
Transcripts:OTTHUMT00000329205
Position:
Human AssemblyChrPosition (strand)Source
Build 362101,255,361 - 101,256,072 (-)MPROMDB
RGD ID:6798091
Promoter ID:HG_KWN:34162
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Jurkat
Transcripts:OTTHUMT00000329203
Position:
Human AssemblyChrPosition (strand)Source
Build 362101,269,171 - 101,269,671 (-)MPROMDB
RGD ID:6798090
Promoter ID:HG_KWN:34164
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_173647,   OTTHUMT00000329201
Position:
Human AssemblyChrPosition (strand)Source
Build 362101,291,321 - 101,291,821 (-)MPROMDB
RGD ID:6861178
Promoter ID:EPDNEW_H3754
Type:initiation region
Name:RNF149_1
Description:ring finger protein 149
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382101,308,701 - 101,308,761EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:23137 AgrOrtholog
COSMIC RNF149 COSMIC
Ensembl Genes ENSG00000163162 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000295317 ENTREZGENE
  ENST00000295317.4 UniProtKB/Swiss-Prot
  ENST00000424632 ENTREZGENE
  ENST00000424632.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.50.30.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000163162 GTEx
HGNC ID HGNC:23137 ENTREZGENE
Human Proteome Map RNF149 Human Proteome Map
InterPro PA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PA_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNF149_RING-H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:284996 UniProtKB/Swiss-Prot
NCBI Gene 284996 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE RNF149 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF02225 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134895641 PharmGKB
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PA domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F8WCD0 ENTREZGENE, UniProtKB/TrEMBL
  Q53S14 ENTREZGENE
  Q8N5I8 ENTREZGENE
  Q8NBY5 ENTREZGENE
  Q8NC42 ENTREZGENE
  Q8WUU3 ENTREZGENE
  RN149_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q53S14 UniProtKB/Swiss-Prot
  Q8N5I8 UniProtKB/Swiss-Prot
  Q8NBY5 UniProtKB/Swiss-Prot
  Q8WUU3 UniProtKB/Swiss-Prot