Smyd4 (SET and MYND domain containing 4) - Rat Genome Database

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Gene: Smyd4 (SET and MYND domain containing 4) Mus musculus
Analyze
Symbol: Smyd4
Name: SET and MYND domain containing 4
RGD ID: 1316529
MGI Page MGI
Description: Predicted to enable histone deacetylase binding activity. Predicted to be involved in heart development. Located in cytoplasm and nucleus. Is expressed in brain and embryo. Orthologous to human SMYD4 (SET and MYND domain containing 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G430029E23Rik; RP23-384C18.3; SET and MYND domain-containing protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,239,259 - 75,296,533 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,239,259 - 75,296,531 (+)EnsemblGRCm39 Ensembl
GRCm381175,348,433 - 75,405,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,348,433 - 75,405,705 (+)EnsemblGRCm38mm10GRCm38
MGSCv371175,161,935 - 75,219,207 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,164,791 - 75,221,881 (+)NCBIMGSCv36mm8
Celera1182,856,536 - 82,914,131 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
heart development  (IBA,ISO,ISS)
methylation  (IEA)

Cellular Component
cytoplasm  (IBA,IDA)
nucleus  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10217254   PMID:10349636   PMID:10512203   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14691545   PMID:15368895   PMID:15489334   PMID:15782199  
PMID:15840001   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18799693   PMID:20305823   PMID:21677750   PMID:21873635   PMID:24652767   PMID:25077969   PMID:28498369   PMID:30110327  
PMID:30973865   PMID:38355793  


Genomics

Comparative Map Data
Smyd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,239,259 - 75,296,533 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,239,259 - 75,296,531 (+)EnsemblGRCm39 Ensembl
GRCm381175,348,433 - 75,405,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,348,433 - 75,405,705 (+)EnsemblGRCm38mm10GRCm38
MGSCv371175,161,935 - 75,219,207 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,164,791 - 75,221,881 (+)NCBIMGSCv36mm8
Celera1182,856,536 - 82,914,131 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.82NCBI
SMYD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38171,779,485 - 1,829,902 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl171,779,485 - 1,830,634 (-)EnsemblGRCh38hg38GRCh38
GRCh37171,682,779 - 1,733,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,629,579 - 1,679,925 (-)NCBINCBI36Build 36hg18NCBI36
Celera171,699,373 - 1,749,745 (-)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef171,580,221 - 1,629,586 (-)NCBIHuRef
CHM1_1171,690,900 - 1,741,934 (-)NCBICHM1_1
T2T-CHM13v2.0171,668,185 - 1,718,627 (-)NCBIT2T-CHM13v2.0
Smyd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81060,698,376 - 60,744,693 (+)NCBIGRCr8
mRatBN7.21060,200,067 - 60,246,387 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1060,200,114 - 60,246,387 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1064,846,503 - 64,892,829 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01064,352,094 - 64,398,423 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01059,814,494 - 59,860,817 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01062,191,669 - 62,237,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1062,191,656 - 62,238,113 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01061,904,769 - 61,951,108 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41062,663,360 - 62,709,630 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11062,678,332 - 62,722,680 (+)NCBI
Celera1059,229,757 - 59,276,042 (+)NCBICelera
Cytogenetic Map10q24NCBI
Smyd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554811,361,962 - 1,412,298 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554811,361,963 - 1,412,669 (+)NCBIChiLan1.0ChiLan1.0
SMYD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,352,210 - 9,401,116 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11711,315,797 - 11,367,715 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0171,764,307 - 1,813,532 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1171,657,400 - 1,705,277 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl171,657,413 - 1,705,277 (-)Ensemblpanpan1.1panPan2
SMYD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,904,089 - 45,958,466 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl945,902,648 - 45,957,334 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha945,054,025 - 45,109,193 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0946,730,874 - 46,786,014 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl946,730,727 - 46,785,990 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1945,500,357 - 45,555,569 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0945,794,774 - 45,850,347 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0945,849,337 - 45,904,503 (-)NCBIUU_Cfam_GSD_1.0
Smyd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560245,022,921 - 45,050,864 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365387,899,781 - 7,928,718 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365387,880,061 - 7,928,663 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMYD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1247,944,148 - 48,009,586 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11247,944,220 - 48,009,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SMYD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,426,098 - 1,470,202 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl161,426,599 - 1,470,276 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605920,501,040 - 20,546,110 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smyd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247864,498,767 - 4,546,492 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247864,498,817 - 4,547,730 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Smyd4
1395 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:520
Count of miRNA genes:389
Interacting mature miRNAs:445
Transcripts:ENSMUST00000044530, ENSMUST00000135774, ENSMUST00000145888, ENSMUST00000157055
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117373754182069425Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001102611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK030380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN693729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000044530   ⟹   ENSMUSP00000047505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,239,259 - 75,296,531 (+)Ensembl
GRCm38.p6 Ensembl1175,348,433 - 75,405,705 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,290,435 - 75,291,459 (+)Ensembl
GRCm38.p6 Ensembl1175,399,609 - 75,400,633 (+)Ensembl
Ensembl Acc Id: ENSMUST00000145888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,278,297 - 75,281,500 (+)Ensembl
GRCm38.p6 Ensembl1175,387,471 - 75,390,674 (+)Ensembl
Ensembl Acc Id: ENSMUST00000157055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,239,321 - 75,273,844 (+)Ensembl
GRCm38.p6 Ensembl1175,348,495 - 75,383,018 (+)Ensembl
RefSeq Acc Id: NM_001102611   ⟹   NP_001096081
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,239,259 - 75,296,531 (+)NCBI
GRCm381175,348,433 - 75,405,705 (+)NCBI
MGSCv371175,161,935 - 75,219,207 (+)RGD
Celera1182,856,536 - 82,914,131 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533535   ⟹   XP_006533598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,239,282 - 75,296,533 (+)NCBI
GRCm381175,348,456 - 75,405,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533536   ⟹   XP_006533599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,239,275 - 75,296,533 (+)NCBI
GRCm381175,348,449 - 75,405,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533537   ⟹   XP_006533600
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,239,307 - 75,296,533 (+)NCBI
GRCm381175,348,455 - 75,405,707 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001096081   ⟸   NM_001102611
- UniProtKB: Q69Z60 (UniProtKB/Swiss-Prot),   Q5SWN4 (UniProtKB/Swiss-Prot),   Q501N5 (UniProtKB/Swiss-Prot),   Q3U3Z8 (UniProtKB/Swiss-Prot),   A2BDD0 (UniProtKB/Swiss-Prot),   Q8BMP3 (UniProtKB/Swiss-Prot),   Q8BTK5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533599   ⟸   XM_006533536
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006533598   ⟸   XM_006533535
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006533600   ⟸   XM_006533537
- Peptide Label: isoform X3
- UniProtKB: Q8BTK5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000047505   ⟸   ENSMUST00000044530
Protein Domains
SET

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BTK5-F1-model_v2 AlphaFold Q8BTK5 1-799 view protein structure

Promoters
RGD ID:6822180
Promoter ID:MM_KWN:8496
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001102611,   NM_001164223,   OTTMUST00000013977,   OTTMUST00000013979,   OTTMUST00000013980,   UC007KDL.1,   UC007KDN.1,   UC007KDO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361175,161,686 - 75,162,187 (+)MPROMDB
RGD ID:8675530
Promoter ID:EPDNEW_M15796
Type:initiation region
Name:Smyd4_1
Description:Mus musculus SET and MYND domain containing 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15797  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381175,348,521 - 75,348,581EPDNEW
RGD ID:8675532
Promoter ID:EPDNEW_M15797
Type:single initiation site
Name:Smyd4_2
Description:Mus musculus SET and MYND domain containing 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15796  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381175,365,986 - 75,366,046EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442796 AgrOrtholog
Ensembl Genes ENSMUSG00000018809 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044530 ENTREZGENE
  ENSMUST00000044530.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
  2.170.270.10 UniProtKB/Swiss-Prot
  6.10.140.2220 UniProtKB/Swiss-Prot
InterPro SET-MYND_domain_protein UniProtKB/Swiss-Prot
  SET_dom UniProtKB/Swiss-Prot
  SET_dom_sf UniProtKB/Swiss-Prot
  SMYD4_SET UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  Znf_MYND UniProtKB/Swiss-Prot
KEGG Report mmu:319822 UniProtKB/Swiss-Prot
MGD MGI:2442796 ENTREZGENE
NCBI Gene 319822 ENTREZGENE
PANTHER SET AND MYND DOMAIN-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot
  SET AND MYND DOMAIN-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot
Pfam SET UniProtKB/Swiss-Prot
  zf-MYND UniProtKB/Swiss-Prot
PhenoGen Smyd4 PhenoGen
PROSITE SET UniProtKB/Swiss-Prot
  ZF_MYND_1 UniProtKB/Swiss-Prot
  ZF_MYND_2 UniProtKB/Swiss-Prot
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/Swiss-Prot
  SSF48452 UniProtKB/Swiss-Prot
  SSF82199 UniProtKB/Swiss-Prot
UniProt A2BDD0 ENTREZGENE
  Q3U3Z8 ENTREZGENE
  Q501N5 ENTREZGENE
  Q5SWN4 ENTREZGENE
  Q69Z60 ENTREZGENE
  Q8BMP3 ENTREZGENE
  Q8BTK5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2BDD0 UniProtKB/Swiss-Prot
  Q3U3Z8 UniProtKB/Swiss-Prot
  Q501N5 UniProtKB/Swiss-Prot
  Q5SWN4 UniProtKB/Swiss-Prot
  Q69Z60 UniProtKB/Swiss-Prot
  Q8BMP3 UniProtKB/Swiss-Prot