Cntnap4 (contactin associated protein-like 4) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cntnap4 (contactin associated protein-like 4) Mus musculus
Analyze
Symbol: Cntnap4
Name: contactin associated protein-like 4
RGD ID: 1315090
MGI Page MGI
Description: Enables PDZ domain binding activity. Involved in modulation of chemical synaptic transmission; regulation of grooming behavior; and regulation of synapse organization. Acts upstream of or within neural precursor cell proliferation and neuron differentiation. Located in dendrite and plasma membrane. Is active in GABA-ergic synapse and presynaptic membrane. Is expressed in brain; dentate gyrus subgranular zone; and thalamus. Orthologous to human CNTNAP4 (contactin associated protein family member 4).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ca; Caspr4; cell recognition molecule Caspr4; cell recognition protein CASPR4; contactin associated protein 4; contactin-associated protein-like 4; E130114F09Rik
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398113,296,523 - 113,609,339 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8113,296,675 - 113,609,349 (+)EnsemblGRCm39 Ensembl
GRCm388112,569,798 - 112,882,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8112,570,043 - 112,882,717 (+)EnsemblGRCm38mm10GRCm38
MGSCv378115,093,943 - 115,406,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368115,456,020 - 115,768,684 (+)NCBIMGSCv36mm8
Celera8116,793,464 - 117,106,647 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map858.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
dendrite  (IDA)
GABA-ergic synapse  (IDA,IEP,IMP)
plasma membrane  (IDA)
presynaptic membrane  (IDA,IEP,IMP)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12093160   PMID:12477932   PMID:15368895   PMID:16141072   PMID:16141073   PMID:21677750   PMID:22282597   PMID:24154525  
PMID:24411736   PMID:24870235   PMID:24952961   PMID:25279559   PMID:26389685   PMID:28558017   PMID:28781169   PMID:28968899   PMID:29905970   PMID:32194851   PMID:36395738   PMID:37087484  
PMID:38479556  


Genomics

Comparative Map Data
Cntnap4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398113,296,523 - 113,609,339 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8113,296,675 - 113,609,349 (+)EnsemblGRCm39 Ensembl
GRCm388112,569,798 - 112,882,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8112,570,043 - 112,882,717 (+)EnsemblGRCm38mm10GRCm38
MGSCv378115,093,943 - 115,406,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368115,456,020 - 115,768,684 (+)NCBIMGSCv36mm8
Celera8116,793,464 - 117,106,647 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map858.7NCBI
CNTNAP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381676,277,401 - 76,560,757 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1676,277,278 - 76,560,757 (+)EnsemblGRCh38hg38GRCh38
GRCh371676,311,299 - 76,594,654 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361674,868,677 - 75,150,636 (+)NCBINCBI36Build 36hg18NCBI36
Celera1660,613,616 - 60,890,640 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1662,072,464 - 62,349,684 (+)NCBIHuRef
CHM1_11677,724,035 - 78,004,510 (+)NCBICHM1_1
T2T-CHM13v2.01682,333,540 - 82,616,946 (+)NCBIT2T-CHM13v2.0
Cntnap4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81957,477,447 - 57,765,173 (+)NCBIGRCr8
mRatBN7.21940,568,684 - 40,861,879 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1940,568,684 - 40,854,656 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1947,416,591 - 47,695,446 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01948,069,935 - 48,348,742 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01950,326,557 - 50,605,416 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01944,817,727 - 45,118,133 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1944,908,905 - 45,117,309 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01955,658,449 - 55,952,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41942,560,079 - 42,850,631 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11942,508,008 - 42,854,853 (+)NCBI
Celera1939,903,489 - 40,188,589 (+)NCBICelera
Cytogenetic Map19q12NCBI
Cntnap4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955484256,328 - 521,073 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955484258,232 - 521,133 (-)NCBIChiLan1.0ChiLan1.0
CNTNAP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21885,661,197 - 86,280,882 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11691,583,482 - 92,208,457 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01656,512,541 - 57,138,499 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11676,199,645 - 76,485,958 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1676,199,706 - 76,484,466 (+)Ensemblpanpan1.1panPan2
CNTNAP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1574,507,728 - 74,748,798 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl574,509,885 - 74,748,767 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha574,464,216 - 74,705,564 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0574,820,178 - 75,062,105 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl574,820,183 - 75,061,774 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1574,757,538 - 74,999,913 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0574,593,063 - 74,834,485 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0575,082,944 - 75,324,119 (-)NCBIUU_Cfam_GSD_1.0
Cntnap4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934934,539,730 - 34,779,305 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647524,809,531 - 25,049,854 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647524,809,813 - 25,049,362 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTNAP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl611,317,848 - 11,589,300 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1611,316,534 - 11,589,628 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CNTNAP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1561,706,427 - 61,984,656 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl561,706,444 - 61,982,587 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604714,069,458 - 14,347,466 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cntnap4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474610,378,704 - 10,650,691 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474610,376,304 - 10,649,868 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cntnap4
10052 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:646
Count of miRNA genes:338
Interacting mature miRNAs:388
Transcripts:ENSMUST00000034225, ENSMUST00000118171, ENSMUST00000125196, ENSMUST00000125976, ENSMUST00000127636, ENSMUST00000140753
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
35673316Ari3_mantibody response to influenza 3, day 15, IgM (mouse)8109426632113826632Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
36049782Arc2_mantibody response to CHIKV 2, day 7, IgM (mouse)8109426632113826632Mouse
36049783Arc3_mantibody response to CHIKV 3, day 7, FRNT50 (mouse)8109426632113826632Mouse
36049780Ars12_mantibody response to SARS-CoV 12, 4 days post-rechallenge, IgM (mouse)8109426632113826632Mouse
36049781Arc1_mantibody response to CHIKV 1, day 7, IgG (mouse)8109426632113826632Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1300681Pgia22_mproteoglycan induced arthritis 22 (mouse)Not determined8102486208116025457Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
11079194Tpnr6_mthermal pain response 6 (mouse)8111166632114956740Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse

Markers in Region
D8Mit152  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388112,717,319 - 112,717,565UniSTSGRCm38
MGSCv378115,241,219 - 115,241,465UniSTSGRCm37
Celera8116,941,164 - 116,941,410UniSTS
Cytogenetic Map8E1UniSTS
cM Map856.0UniSTS
Whitehead Genetic857.9UniSTS
Whitehead/MRC_RH81354.04UniSTS
Whitehead_YAC8 UniSTS
D8Mit199  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388112,595,466 - 112,595,612UniSTSGRCm38
MGSCv378115,119,366 - 115,119,512UniSTSGRCm37
Celera8116,819,016 - 116,819,162UniSTS
Cytogenetic Map8E1UniSTS
cM Map856.0UniSTS
Whitehead Genetic857.9UniSTS
Whitehead_YAC8 UniSTS
D8Mit270  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388112,850,476 - 112,850,598UniSTSGRCm38
MGSCv378115,374,376 - 115,374,498UniSTSGRCm37
Celera8117,074,398 - 117,074,520UniSTS
Cytogenetic Map8E1UniSTS
cM Map856.0UniSTS
Whitehead Genetic857.9UniSTS
Whitehead/MRC_RH81354.04UniSTS
Whitehead_YAC8 UniSTS
D8Mit353  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388112,784,365 - 112,784,479UniSTSGRCm38
MGSCv378115,308,265 - 115,308,379UniSTSGRCm37
Celera8117,009,218 - 117,009,332UniSTS
Cytogenetic Map8E1UniSTS
cM Map856.0UniSTS
Whitehead Genetic857.9UniSTS
RH118318  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388112,776,481 - 112,776,677UniSTSGRCm38
MGSCv378115,300,381 - 115,300,577UniSTSGRCm37
Celera8117,000,843 - 117,001,039UniSTS
Cytogenetic Map8E1UniSTS
Whitehead/MRC_RH81350.79UniSTS
Whitehead/MRC_RH81354.04UniSTS
UniSTS:236009  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388112,859,245 - 112,859,411UniSTSGRCm38
MGSCv378115,383,145 - 115,383,311UniSTSGRCm37
Celera8117,083,200 - 117,083,366UniSTS
Cytogenetic Map8E1UniSTS
D19Got36  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388112,582,345 - 112,582,662UniSTSGRCm38
MGSCv378115,106,245 - 115,106,562UniSTSGRCm37
Celera8116,805,768 - 116,806,083UniSTS
Cytogenetic Map8E1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_130457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF333770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000034225   ⟹   ENSMUSP00000034225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8113,296,675 - 113,609,337 (+)Ensembl
GRCm38.p6 Ensembl8112,570,043 - 112,882,705 (+)Ensembl
Ensembl Acc Id: ENSMUST00000118171   ⟹   ENSMUSP00000112511
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8113,296,675 - 113,609,349 (+)Ensembl
GRCm38.p6 Ensembl8112,570,043 - 112,882,717 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8113,296,687 - 113,513,210 (+)Ensembl
GRCm38.p6 Ensembl8112,570,055 - 112,786,578 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8113,296,675 - 113,586,148 (+)Ensembl
GRCm38.p6 Ensembl8112,570,043 - 112,859,516 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8113,458,031 - 113,460,151 (+)Ensembl
GRCm38.p6 Ensembl8112,731,399 - 112,733,519 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8113,500,286 - 113,517,699 (+)Ensembl
GRCm38.p6 Ensembl8112,773,654 - 112,791,067 (+)Ensembl
RefSeq Acc Id: NM_130457   ⟹   NP_569724
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398113,296,675 - 113,609,339 (+)NCBI
GRCm388112,570,043 - 112,882,707 (+)NCBI
MGSCv378115,093,943 - 115,406,607 (+)RGD
Celera8116,793,464 - 117,106,647 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530729   ⟹   XP_006530792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398113,296,523 - 113,609,339 (+)NCBI
GRCm388112,569,798 - 112,882,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530730   ⟹   XP_006530793
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398113,296,523 - 113,609,339 (+)NCBI
GRCm388112,569,798 - 112,882,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243313   ⟹   XP_030099173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398113,296,523 - 113,609,339 (+)NCBI
GRCm388112,569,798 - 112,882,707 (+)NCBI
Sequence:
RefSeq Acc Id: NP_569724   ⟸   NM_130457
- Peptide Label: precursor
- UniProtKB: Q8K002 (UniProtKB/Swiss-Prot),   Q99P47 (UniProtKB/Swiss-Prot),   D3YWB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530792   ⟸   XM_006530729
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006530793   ⟸   XM_006530730
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030099173   ⟸   XM_030243313
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000112511   ⟸   ENSMUST00000118171
Ensembl Acc Id: ENSMUSP00000034225   ⟸   ENSMUST00000034225
Protein Domains
EGF-like   F5/8 type C   Fibrinogen C-terminal   Laminin G   Laminin G-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99P47-F1-model_v2 AlphaFold Q99P47 1-1310 view protein structure

Promoters
RGD ID:8668347
Promoter ID:EPDNEW_M12204
Type:multiple initiation site
Name:Cntnap4_1
Description:Mus musculus contactin associated protein-like 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388112,570,051 - 112,570,111EPDNEW
RGD ID:6842955
Promoter ID:MM_KWN:55808
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000079307,   ENSMUST00000118171,   NM_130457,   OTTMUST00000076705,   OTTMUST00000076707,   UC009NNJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368115,093,531 - 115,094,031 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2183572 AgrOrtholog
Ensembl Genes ENSMUSG00000031772 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034225 ENTREZGENE
  ENSMUST00000034225.7 UniProtKB/Swiss-Prot
  ENSMUST00000118171.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_G UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurexin-related_CASP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:170571 UniProtKB/Swiss-Prot
MGD MGI:2183572 ENTREZGENE
NCBI Gene 170571 ENTREZGENE
PANTHER PIKACHURIN-LIKE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15036:SF40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam F5_F8_type_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cntnap4 PhenoGen
PROSITE EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LamG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56496 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CNTP4_MOUSE UniProtKB/Swiss-Prot
  D3YWB9 ENTREZGENE, UniProtKB/TrEMBL
  Q69ZB1_MOUSE UniProtKB/TrEMBL
  Q8BPP6_MOUSE UniProtKB/TrEMBL
  Q8K002 ENTREZGENE
  Q99P47 ENTREZGENE
UniProt Secondary Q8K002 UniProtKB/Swiss-Prot