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Gene: Cntnap4 (contactin associated protein-like 4) Mus musculus

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Symbol:

Cntnap4

Name:

contactin associated protein-like 4

RGD ID:

1315090

MGI Page

MGI

Description:

Enables PDZ domain binding activity. Involved in modulation of chemical synaptic transmission; regulation of grooming behavior; and regulation of synapse organization. Acts upstream of or within neural precursor cell proliferation and neuron differentiation. Located in dendrite and plasma membrane. Is active in GABA-ergic synapse and presynaptic membrane. Is expressed in brain. Orthologous to human CNTNAP4 (contactin associated protein family member 4).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ca; Caspr4; cell recognition molecule Caspr4; cell recognition protein CASPR4; contactin associated protein 4; contactin-associated protein-like 4; E130114F09Rik

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	113,296,523 - 113,609,339 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	113,296,675 - 113,609,349 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	112,569,798 - 112,882,707 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	112,570,043 - 112,882,717 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	115,093,943 - 115,406,607 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	115,456,020 - 115,768,684 (+)	NCBI		MGSCv36	mm8
Celera	8	116,793,464 - 117,106,647 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	58.7	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cntnap4	Mouse	hepatocellular carcinoma		ISO	CNTNAP4 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:28284560

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cntnap4	Mouse	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of CNTNAP4 mRNA	CTD	PMID:26290441
Cntnap4	Mouse	3,4-methylenedioxymethamphetamine	decreases expression	EXP		6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of CNTNAP4 mRNA	CTD	PMID:20188158
Cntnap4	Mouse	4,4'-diaminodiphenylmethane	decreases expression	EXP		6480464	4 and 4'-diaminodiphenylmethane results in decreased expression of CNTNAP4 mRNA	CTD	PMID:18648102
Cntnap4	Mouse	6-propyl-2-thiouracil	increases expression	ISO	Cntnap4 (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of CNTNAP4 mRNA	CTD	PMID:24780913
Cntnap4	Mouse	acrylamide	decreases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	Acrylamide results in decreased expression of CNTNAP4 mRNA	CTD	PMID:32763439
Cntnap4	Mouse	aflatoxin B1	decreases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased expression of CNTNAP4 mRNA	CTD	PMID:22100608
Cntnap4	Mouse	all-trans-retinoic acid	decreases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	Tretinoin results in decreased expression of CNTNAP4 mRNA	CTD	PMID:23724009
Cntnap4	Mouse	atrazine	affects methylation	ISO	Cntnap4 (Rattus norvegicus)	6480464	Atrazine affects the methylation of CNTNAP4 gene	CTD	PMID:28931070 and PMID:35440735
Cntnap4	Mouse	belinostat	decreases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	belinostat results in decreased expression of CNTNAP4 mRNA	CTD	PMID:27188386
Cntnap4	Mouse	benzo[a]pyrene	decreases methylation	ISO	CNTNAP4 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of CNTNAP4 promoter	CTD	PMID:27901495
Cntnap4	Mouse	benzo[a]pyrene	decreases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of CNTNAP4 mRNA	CTD	PMID:32234424
Cntnap4	Mouse	bis(2-ethylhexyl) phthalate	decreases expression	EXP		6480464	Diethylhexyl Phthalate results in decreased expression of CNTNAP4 mRNA	CTD	PMID:34319233
Cntnap4	Mouse	bisphenol A	decreases expression	ISO	Cntnap4 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of CNTNAP4 mRNA	CTD	PMID:25181051 more ...
Cntnap4	Mouse	bisphenol A	increases methylation	ISO	Cntnap4 (Rattus norvegicus)	6480464	bisphenol A results in increased methylation of CNTNAP4 gene	CTD	PMID:28505145
Cntnap4	Mouse	bromobenzene	decreases expression	ISO	Cntnap4 (Rattus norvegicus)	6480464	bromobenzene results in decreased expression of CNTNAP4 mRNA	CTD	PMID:32479839
Cntnap4	Mouse	calcitriol	increases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	Calcitriol results in increased expression of CNTNAP4 mRNA	CTD	PMID:16002434
Cntnap4	Mouse	copper atom	increases expression	ISO	Cntnap4 (Rattus norvegicus)	6480464	Copper deficiency results in increased expression of CNTNAP4 mRNA	CTD	PMID:26033743
Cntnap4	Mouse	copper(0)	increases expression	ISO	Cntnap4 (Rattus norvegicus)	6480464	Copper deficiency results in increased expression of CNTNAP4 mRNA	CTD	PMID:26033743
Cntnap4	Mouse	cyclosporin A	decreases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of CNTNAP4 mRNA	CTD	PMID:20106945
Cntnap4	Mouse	fenamidone	decreases expression	EXP		6480464	fenamidone results in decreased expression of CNTNAP4 mRNA	CTD	PMID:27029645
Cntnap4	Mouse	lipopolysaccharide	multiple interactions	ISO	CNTNAP4 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of CNTNAP4 mRNA	CTD	PMID:35811015
Cntnap4	Mouse	Monobutylphthalate	increases expression	ISO	Cntnap4 (Rattus norvegicus)	6480464	monobutyl phthalate results in increased expression of CNTNAP4 mRNA	CTD	PMID:29162477
Cntnap4	Mouse	N-Nitrosopyrrolidine	decreases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	N-Nitrosopyrrolidine results in decreased expression of CNTNAP4 mRNA	CTD	PMID:32234424
Cntnap4	Mouse	ochratoxin A	decreases expression	ISO	Cntnap4 (Rattus norvegicus)	6480464	ochratoxin A results in decreased expression of CNTNAP4 mRNA	CTD	PMID:30449730
Cntnap4	Mouse	paracetamol	decreases expression	ISO	CNTNAP4 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of CNTNAP4 mRNA	CTD	PMID:29067470
Cntnap4	Mouse	paracetamol	decreases expression	ISO	Cntnap4 (Rattus norvegicus)	6480464	Acetaminophen results in decreased expression of CNTNAP4 mRNA	CTD	PMID:33387578
Cntnap4	Mouse	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	CNTNAP4 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of CNTNAP4 mRNA	CTD	PMID:35811015
Cntnap4	Mouse	sodium arsenite	increases expression	EXP		6480464	sodium arsenite results in increased expression of CNTNAP4 mRNA	CTD	PMID:37682722

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cntnap4	Mouse	cell adhesion	involved_in	IEA	UniProtKB-KW:KW-0130	2290270		UniProt	GO_REF:0000043
Cntnap4	Mouse	modulation of chemical synaptic transmission	involved_in	IMP		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	modulation of chemical synaptic transmission	involved_in	IDA		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	neural precursor cell proliferation	acts_upstream_of_or_within	IMP		2290270	PMID:25279559	MGI	PMID:25279559
Cntnap4	Mouse	neuron differentiation	acts_upstream_of_or_within	IDA		2290270	PMID:25279559	MGI	PMID:25279559
Cntnap4	Mouse	neuron differentiation	acts_upstream_of_or_within	IMP		2290270	PMID:25279559	MGI	PMID:25279559
Cntnap4	Mouse	regulation of grooming behavior	involved_in	IMP		2290270	PMID:24870235	UniProt	PMID:24870235
Cntnap4	Mouse	regulation of synapse organization	involved_in	IDA		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	regulation of synapse organization	involved_in	IMP		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	regulation of synaptic transmission, dopaminergic	involved_in	IMP		2290270	PMID:24870235	UniProt	PMID:24870235
Cntnap4	Mouse	regulation of synaptic transmission, GABAergic	involved_in	IMP		2290270	PMID:24870235	UniProt	PMID:24870235

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cntnap4	Mouse	dendrite	located_in	IDA		2290270	PMID:12093160	MGI	PMID:12093160
Cntnap4	Mouse	GABA-ergic synapse	is_active_in	IEP		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	GABA-ergic synapse	is_active_in	IDA		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	GABA-ergic synapse	is_active_in	IMP		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	plasma membrane	located_in	IDA		2290270	PMID:25279559	MGI	PMID:25279559
Cntnap4	Mouse	presynaptic membrane	is_active_in	IEP		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	presynaptic membrane	is_active_in	IMP		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	presynaptic membrane	is_active_in	IDA		2290270	PMID:24870235	SynGO	PMID:24870235
Cntnap4	Mouse	presynaptic membrane	located_in	IDA		2290270	PMID:24870235	UniProt	PMID:24870235

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cntnap4	Mouse	PDZ domain binding	enables	IDA		2290270	PMID:25279559	MGI	PMID:25279559
Cntnap4	Mouse	protein binding	enables	IPI	PR:Q91XL2	2290270	PMID:25279559	MGI	PMID:25279559
Cntnap4	Mouse	protein binding	enables	IPI	PR:O70589	2290270	PMID:12093160	MGI	PMID:12093160

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cntnap4	Mouse	abnormal inhibitory postsynaptic currents		IAGP		5509061		MGI	PMID:24870235
Cntnap4	Mouse	abnormal miniature inhibitory postsynaptic currents		IAGP		5509061		MGI	PMID:24870235
Cntnap4	Mouse	abnormal postsynaptic density morphology		IAGP		5509061		MGI	PMID:24870235
Cntnap4	Mouse	abnormal prepulse inhibition		IAGP		5509061		MGI	PMID:24870235
Cntnap4	Mouse	abnormal substantia nigra pars compacta morphology		IAGP		5509061		MGI	PMID:32194851
Cntnap4	Mouse	abnormal synapse morphology		IAGP		5509061		MGI	PMID:24870235
Cntnap4	Mouse	decreased locomotor activity		IAGP		5509061		MGI	PMID:32194851
Cntnap4	Mouse	enhanced autophagy		IAGP		5509061		MGI	PMID:32194851
Cntnap4	Mouse	impaired coordination		IAGP		5509061		MGI	PMID:32194851
Cntnap4	Mouse	increased dopamine level		IAGP		5509061		MGI	PMID:24870235
Cntnap4	Mouse	increased grooming behavior		IAGP		5509061		MGI	PMID:24870235
Cntnap4	Mouse	increased startle reflex		IAGP		5509061		MGI	PMID:24870235
Cntnap4	Mouse	neuron degeneration		IAGP		5509061		MGI	PMID:32194851
Cntnap4	Mouse	seizures		IAGP		5509061		MGI	PMID:24870235

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12093160	PMID:12477932	PMID:15368895	PMID:16141072	PMID:16141073	PMID:21677750	PMID:22282597	PMID:24154525
PMID:24411736	PMID:24870235	PMID:24952961	PMID:25279559	PMID:26389685	PMID:28558017	PMID:28781169	PMID:28968899	PMID:29905970	PMID:32194851	PMID:36395738	PMID:37087484
PMID:38479556

Cntnap4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	113,296,523 - 113,609,339 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	113,296,675 - 113,609,349 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	112,569,798 - 112,882,707 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	112,570,043 - 112,882,717 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	115,093,943 - 115,406,607 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	115,456,020 - 115,768,684 (+)	NCBI		MGSCv36	mm8
Celera	8	116,793,464 - 117,106,647 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	58.7	NCBI

CNTNAP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	76,277,401 - 76,560,757 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	76,277,278 - 76,560,757 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	76,311,299 - 76,594,654 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	74,868,677 - 75,150,636 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	60,613,616 - 60,890,640 (+)	NCBI		Celera
Cytogenetic Map	16	q23.1	NCBI
HuRef	16	62,072,464 - 62,349,684 (+)	NCBI		HuRef
CHM1_1	16	77,724,035 - 78,004,510 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	82,333,540 - 82,616,946 (+)	NCBI		T2T-CHM13v2.0

Cntnap4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	57,477,447 - 57,765,173 (+)	NCBI		GRCr8
mRatBN7.2	19	40,568,684 - 40,861,879 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	40,568,684 - 40,854,656 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	47,416,591 - 47,695,446 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	48,069,935 - 48,348,742 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	50,326,557 - 50,605,416 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	44,817,727 - 45,118,133 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	44,908,905 - 45,117,309 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	55,658,449 - 55,952,179 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	42,560,079 - 42,850,631 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	42,508,008 - 42,854,853 (+)	NCBI
Celera	19	39,903,489 - 40,188,589 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Cntnap4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	256,328 - 521,073 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	258,232 - 521,133 (-)	NCBI	ChiLan1.0	ChiLan1.0

CNTNAP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	85,661,197 - 86,280,882 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	91,583,482 - 92,208,457 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	56,512,541 - 57,138,499 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	76,199,645 - 76,485,958 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	76,199,706 - 76,484,466 (+)	Ensembl	panpan1.1		panPan2

CNTNAP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	74,507,728 - 74,748,798 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	74,509,885 - 74,748,767 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	74,464,216 - 74,705,564 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	74,820,178 - 75,062,105 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	74,820,183 - 75,061,774 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	74,757,538 - 74,999,913 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	74,593,063 - 74,834,485 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	75,082,944 - 75,324,119 (-)	NCBI		UU_Cfam_GSD_1.0

Cntnap4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	34,539,730 - 34,779,305 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	24,809,531 - 25,049,854 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	24,809,813 - 25,049,362 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNTNAP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	11,317,848 - 11,589,300 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	11,316,534 - 11,589,628 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CNTNAP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	61,706,427 - 61,984,656 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	61,706,444 - 61,982,587 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	14,069,458 - 14,347,466 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cntnap4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	10,378,704 - 10,650,691 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	10,376,304 - 10,649,868 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cntnap4
24516 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	646
Count of miRNA genes:	338
Interacting mature miRNAs:	388
Transcripts:	ENSMUST00000034225, ENSMUST00000118171, ENSMUST00000125196, ENSMUST00000125976, ENSMUST00000127636, ENSMUST00000140753
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4141435	Fbtq3_m	femoral bone trait QTL 3 (mouse)			Not determined		8	100965309	130127694	Mouse
35673316	Ari3_m	antibody response to influenza 3, day 15, IgM (mouse)					8	109426632	113826632	Mouse
12904960	Gmmq6_m	gastrocnemius muscle mass QTL 6 (mouse)					8	111481497	130127694	Mouse
11252141	Fdr2_m	fat response to dietary restriction 2 (mouse)					8	98390634	130127694	Mouse
1302105	Im1_m	Immunoregulatory 1 (mouse)			Not determined		8	99828531	130127694	Mouse
1301080	Sluc9_m	susceptibility to lung cancer 9 (mouse)			Not determined		8	99828531	130127694	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
36049782	Arc2_m	antibody response to CHIKV 2, day 7, IgM (mouse)					8	109426632	113826632	Mouse
36049783	Arc3_m	antibody response to CHIKV 3, day 7, FRNT50 (mouse)					8	109426632	113826632	Mouse
36049780	Ars12_m	antibody response to SARS-CoV 12, 4 days post-rechallenge, IgM (mouse)					8	109426632	113826632	Mouse
14746994	Manh65_m	mandible shape 65 (mouse)					8	106489629	130127694	Mouse
36049781	Arc1_m	antibody response to CHIKV 1, day 7, IgG (mouse)					8	109426632	113826632	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	85486208	119486373	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	86443553	120443701	Mouse
1301316	Dntcs1_m	dental caries susceptibility 1 (mouse)			Not determined		8	103443553	127781786	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
1300681	Pgia22_m	proteoglycan induced arthritis 22 (mouse)			Not determined		8	102486208	116025457	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	82345783	116345783	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79808806	113809031	Mouse
1357494	Obsty2_m	obesity 2 (mouse)			Not determined		8	96245241	129745061	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	86443553	120443701	Mouse
12880431	Fgf23lq2_m	FGF23 serum level QTL 2 (mouse)					8	97626632	130127694	Mouse
10412274	Leci1_m	leukocyte endothelial cell interactions 1 (mouse)			Not determined		8	110415083	130127694	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81819296	115819296	Mouse
12904938	Edlmmq7_m	extensor digitorum longus muscle mass QTL 7 (mouse)					8	111481497	130127694	Mouse
10412273	Fcd1_m	functional capillary density 1 (mouse)			Not determined		8	110415083	130127694	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	86443553	120443701	Mouse
27226796	Scvln16_m	sacral vertebrae length 2, 16 week (mouse)					8	89726628	130027694	Mouse
11079194	Tpnr6_m	thermal pain response 6 (mouse)					8	111166632	114956740	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1301481	Lith11_m	lithogenic gene 11 (mouse)			Not determined		8	98563635	130127694	Mouse
11532692	Sluc38a_m	susceptibility to lung cancer 38a (mouse)					8	105033977	130127694	Mouse
11532691	Sluc38_m	susceptibility to lung cancer 38 (mouse)					8	105033977	130127694	Mouse

D8Mit152

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	112,717,319 - 112,717,565	UniSTS	GRCm38
MGSCv37	8	115,241,219 - 115,241,465	UniSTS	GRCm37
Celera	8	116,941,164 - 116,941,410	UniSTS
Cytogenetic Map	8	E1	UniSTS
cM Map	8	56.0	UniSTS
Whitehead Genetic	8	57.9	UniSTS
Whitehead/MRC_RH	8	1354.04	UniSTS
Whitehead_YAC	8		UniSTS

D8Mit199

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	112,595,466 - 112,595,612	UniSTS	GRCm38
MGSCv37	8	115,119,366 - 115,119,512	UniSTS	GRCm37
Celera	8	116,819,016 - 116,819,162	UniSTS
Cytogenetic Map	8	E1	UniSTS
cM Map	8	56.0	UniSTS
Whitehead Genetic	8	57.9	UniSTS
Whitehead_YAC	8		UniSTS

D8Mit270

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	112,850,476 - 112,850,598	UniSTS	GRCm38
MGSCv37	8	115,374,376 - 115,374,498	UniSTS	GRCm37
Celera	8	117,074,398 - 117,074,520	UniSTS
Cytogenetic Map	8	E1	UniSTS
cM Map	8	56.0	UniSTS
Whitehead Genetic	8	57.9	UniSTS
Whitehead/MRC_RH	8	1354.04	UniSTS
Whitehead_YAC	8		UniSTS

D8Mit353

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	112,784,365 - 112,784,479	UniSTS	GRCm38
MGSCv37	8	115,308,265 - 115,308,379	UniSTS	GRCm37
Celera	8	117,009,218 - 117,009,332	UniSTS
Cytogenetic Map	8	E1	UniSTS
cM Map	8	56.0	UniSTS
Whitehead Genetic	8	57.9	UniSTS

RH118318

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	112,776,481 - 112,776,677	UniSTS	GRCm38
MGSCv37	8	115,300,381 - 115,300,577	UniSTS	GRCm37
Celera	8	117,000,843 - 117,001,039	UniSTS
Cytogenetic Map	8	E1	UniSTS
Whitehead/MRC_RH	8	1350.79	UniSTS
Whitehead/MRC_RH	8	1354.04	UniSTS

UniSTS:236009

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	112,859,245 - 112,859,411	UniSTS	GRCm38
MGSCv37	8	115,383,145 - 115,383,311	UniSTS	GRCm37
Celera	8	117,083,200 - 117,083,366	UniSTS
Cytogenetic Map	8	E1	UniSTS

D19Got36

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	112,582,345 - 112,582,662	UniSTS	GRCm38
MGSCv37	8	115,106,245 - 115,106,562	UniSTS	GRCm37
Celera	8	116,805,768 - 116,806,083	UniSTS
Cytogenetic Map	8	E1	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_130457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006530729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006530730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030243313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC123843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC132107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC165305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF333770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK034258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK042607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK053611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK081891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK083822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK173255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC034628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000034225 ⟹ ENSMUSP00000034225

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	113,296,675 - 113,609,337 (+)	Ensembl
GRCm38.p6 Ensembl	8	112,570,043 - 112,882,705 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000118171 ⟹ ENSMUSP00000112511

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	113,296,675 - 113,609,349 (+)	Ensembl
GRCm38.p6 Ensembl	8	112,570,043 - 112,882,717 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000125196

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	113,296,687 - 113,513,210 (+)	Ensembl
GRCm38.p6 Ensembl	8	112,570,055 - 112,786,578 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000125976

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	113,296,675 - 113,586,148 (+)	Ensembl
GRCm38.p6 Ensembl	8	112,570,043 - 112,859,516 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000127636

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	113,458,031 - 113,460,151 (+)	Ensembl
GRCm38.p6 Ensembl	8	112,731,399 - 112,733,519 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000140753

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	113,500,286 - 113,517,699 (+)	Ensembl
GRCm38.p6 Ensembl	8	112,773,654 - 112,791,067 (+)	Ensembl

RefSeq Acc Id:

NM_130457 ⟹ NP_569724

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	113,296,675 - 113,609,339 (+)	NCBI
GRCm38	8	112,570,043 - 112,882,707 (+)	NCBI
MGSCv37	8	115,093,943 - 115,406,607 (+)	RGD
Celera	8	116,793,464 - 117,106,647 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GAAGACCCAGTCAGTGCTGGGTGAAGGACTGAGGAGAACCTGTCTCCAGCGCTCTGAGAGCCACTCGAGATATTTTGGGGAGCTCAAAAATTATGAATATGGGATCTGTCGCTGGAGCTGTTCTCAAG
ATGTTACTTCTGTTGTCTACTCAAAATTGGAACAGAGTGGAAGCTGGGAATTCATATGACTGTGATGAGCCCCTGGTGTCTGCCTTGCCTCAGGCATCCTTCAGCAGTTCTTCTGAGCTATCCAGCAG
TCACGGTCCTGGATTCGCAAGGCTGAATCGAAGAGACGGAGCTGGTGGCTGGTCCCCACTTGTGTCCAACAAATACCAGTGGCTGCAGATTGACCTTGGAGAGAGGATGGAAGTCACGTCCGTGGCCA
CCCAAGGTGGATATGGGAGCTCCAACTGGGTGACCAGCTATCTCCTGATGTTCAGTGATAGTGGAAGGAACTGGAAGCAGTATAGACAAGAAGACAGCATCTGGGGATTTTCTGGGAACGCGAACGCA
GACAGCGTTGTGTACTATAGACTCCAGCCTTCAATCAAAGCCAGGTTCCTACGCTTCATTCCTCTAGAATGGAACCCCAAGGGCAGAATCGGGATGCGCATTGAGGTGTTCGGGTGTGCATACCGGTC
GGTTGTAATTGATCTTGATGGAAAAAGTTCCCTCCTCTACAGATTTGATCAAAACTCCTTGAGTCCAATAAGAGATATCATATCTTTGAAATTTAAAACCATGGAGAGCGATGGGATCCTACTGCACA
GGGCAGGGCCTGCTGGAGATCATATCACATTGGAGTTAAGAAGAGGAAAGCTCTTCTTACTTATTAATTCAGGTGATGCTAGACTGACCTCCAGTTCGACCCTGATCAACCTCACACTGGGCAGCCTG
CTGGATGATCAGCACTGGCATTCTGTGCTCATCCAGAGACTGGGGAAACAGGTCAACTTTACAGTGGACGAGCACAGGCGTCACTTCCATGCCCAAGGAGAATTCAATTACCTGGATCTTGATTATGA
GATCAGCTTTGGAGGGATCTCAGCACCTGCAAAATCAGTGTCCTTGCCATACAAACATTTCCATGGATGTTTAGAGAACCTCTTTTATAATGGCGTAGATGTCATTGGCTTGGTCAAGGAACACAGCC
CTCAGATCATCACCATGGGAAATGCCTCCTTTTCTTGTTCACAACCACAGTCTATGCCTCTGACTTTTCTGAGCCCCAGGAGTTATTTGGTCCTCCCAGCGTCTACTAAAGAGGAAGCCATTTCAGCC
AGCTTTCAATTCCGAACCTGGAATAAGGCGGGACTTCTGCTCTTCAGTGAACTCCAGCTGGTGTCAGGCAGTCTCCTCCTCTTGCTCAGCGATGGAAAACTTAAACTGACTCTTTACCAGCCAGGAAA
GTCACCCAGTGACATCACAGCAGGTGCAGGCTTAGGTGACGGCCAGTGGCATTCTGTCTCCTTGTCTGCTAAAAGGAATCACCTGAGTGTGGTGGTGGACGGCCACATCAGCCCTGCTTCTCCTTGGC
TGGGGCCCGAGCAGGTTAATTCAGGAGGTGTCTTTTATTTTGGAGGTTGTCCAGACAAAGGCTTTGGATCCAAGTGTAAGAGCCCTCTAGGTGGATTTCAAGGATGCATGAGGCTCATCTCCATCAAC
AACAAAATGGTAGATCTGATTGCAGTCCAGCAGGGGGCCCTTGGCAACTTCAGTGACCTTCAGATAGACTCATGTGGCATCTCAGACAGGTGTTTGCCCAACTCTTGTGAGCATGGTGGTGAATGTTC
TCAGTCTTGGAGCACCTTTCATTGTAACTGCACAAACACGGGGTACACAGGAGCCACTTGTCACAGCTCTGTCTATGAGCAGTCATGTGAAGCCTATAAGCACCAAGGAAATGCTTCTGGATTCTACT
ACATAGACTCAGATGGGAGTGGTCCTTTGCAGCCATTCCTCTTATACTGCAATATGACTGAAACGGCATGGACCGTCATGCAGCACAACGGCTCCGACTTGATGAGAGTCAGGAACACTCACTCTGAG
AATGCGCACACTGGGGTGTTTGAGTACACGGCCAGCATGGAACAGCTCCAGGCCGCCATTAACCGGGCGGAGCACTGCCAACAGGAGCTGGTGTATTACTGCAAGAAGTCGCGCCTCGTTAATCAGCA
AGATGGAAGCCCTCGGAGCTGGTGGGTGGGAAGAACCAATGAGACACAGACATATTGGGGTGGTTCCTTGCCTGTGCATCAAAAGTGCACTTGTGGCTTGGAAGGGAACTGCATTGATGCCCAGTATC
ATTGCAACTGTGATGCAGATCTGAACGAATGGACCAATGACACTGGATTCCTCTCCTATAAAGAACATCTGCCTGTCACTAAGATTGTGATTACGGACACAGGACGGCCCCATTCAGAAGCTGCTTAT
AAACTGGGGCCTCTGCTCTGCCGGGGAGACAGGCCGTTTTGGAACGCAGCTTCCTTTAATACCGAGGCTTCCTACCTCCACTTTCCCACATTCCATGGCGAGCTCAGTGCAGATGTGTCCTTCTTTTT
CAAGACGACAGCCCTCTCTGGGGTGTTTTTAGAAAACCTGGGAATCACTGACTTCATACGAATAGAATTACGCTCACCCACAACAGTCACCTTTTCATTTGACGTGGGGAATGGGCCTTTTGAACTCT
CTGTGCATTCACCCACTCACTTCAACGACAACCAGTGGCATCATGTGCGAGTGGAAAGGAACATGAAAGAGGCATCCCTTCGGGTGGACGAGCTCCCTCCAAAGATACAAGCGGCTCCCACGGATGGC
CATGTCCTGTTACAGCTCAATAGTCAACTCTTTGTTGGTGGGACCGCCACCAGGCAGAGAGGCTTCCTAGGGTGCATCAGGTCCCTGCAGTTGAATGGGATGGCCCTGGATCTGGAAGAAAGAGCCAC
AGTAACCCCTGGGGTGCAGCCAGGTTGCAGAGGACACTGTGGGAGCTATGGAAAGTTATGTCGCCATGGAGGGAAGTGCAGGGAAAAGCCCAGCGGCTTCTTCTGTGATTGCTCTTCCTCTGCCTATG
CAGGACCATTCTGCTCCAAAGAGATTTCCGCATATTTTGGATCTGGGTCTTCTGTGATTTACAATTTTCAAGAAAATTATTCTCTAAGCAAGAACTCCAGCTTTCACGCTGCTTCATTTCATGGGGAT
ATGAAGCTGAGCAGAGAGATGATCAAATTTAGCTTCCGAACCACACGGGCACCAAGCTTGCTGCTTCATATGAGTTCCTTTTATAAAGAATACCTCTCAATTATCATTGCCAAAAACGGAAGTTTGCA
GATACGATACAAGCTAAATAAGTATCACGAACCTGATGTCATCAGCTTTGACTTGAAGAGCATGGCAGATGGGCAGCTTCACCACATAAAGATCAACAGAGAAGAGGGAATGGTCTTCGTGGAGATTG
ATGAGAATACAAGGAGACAAACCTACTTGTCGTCAGGCACAGAATTCAGTGCAGTCAAATCTTTGGTACTGGGCAGAATGCTAGAGTACAGTGATGTAGACCAGGAGACTGCATTGGCTGCAGCCCAT
GGCTTCACAGGCTGCCTCTCTGCAGTGCAGTTCAGCCATATTGCACCTCTGAAGGCTGCTCTGCAACCCGGTCCCCCAGCCCCTGTCACCGTGACAGGGCACGTGACTGAGTCGAGCTGTGTGGCCCC
TTCTGGCACCGATGCCACATCCAGAGAAAGGACGCATTCATTTGCAGATCACTCTGGAACGATGGACGACAGAGAGCCTCTCACTCATGCAATCAAAAGCGACTCTGCAGTGATTGGAGGTCTGATAG
CTGTTGTGATCTTTATCTTGCTTTGTGTCTCTGCCATAGCTGTTCGCATTTATCAGCAGAAAAGGTTATACAAAAGAAATGAGGCAAAAAGGTCAGAGAATGTGGACAGCGCTGAGGCGGTTTTGAAA
AGCGAGCTTCATATTCAGAATGCAGTCGGTGAAAATCAGAAAGAGTATTTCTTCTGATTGGCAATGATCCTCTTAACTTGCAAGGATGAGTTCCTTTTACTAGCCAGGGGCTCTCAGAGGACGAGAAC
TGCTCTAACCCTGACCGTACAGGCGATGGATCTGCAGCACGGCCATCTTGCCATGTCCAAGCTCAGGATGGTTCCAGGCAGCCTCCTCTAGGGATGGGCTCCTTCCAGCCATCATTCTATTAAGAAAG
GAGCTCGCTATTGGTGTCCCTTTCCAACTTCTGCACATGATCAAAGCCAAGCTTAACTTGCTTCACAACTATGGTTTTTAAATGTGGAAACTTTAGCCCTTCTCTTCACCCTGTAAAACATAAGTTTT
GTTAGAGGTAAGAACTCAAAATTGGACTATAAATGGCCTTGCTTTACTTCAGACCAAATGTCCTGTTTGCTTTCGTCTTCACATGGTGTTGTTCATGAGCCTGGAAATGCTTCTGAGATCCTGTTTGG
CTGGTGTTCGCATCTTCAATGGCCAAAAGTCTATACATAAAGCCCCTTTGCCTTTCTCTGTATTACATTCAATACATCAATAGTCTGAAAAATTGTTTTCTTGTCTTTGGCTTGTTTGTATTGCTCTT
TTTCTATTTTACTCCTTTTCTGATACTTTTTAATGCATTTTGTTTTGAGTGTCTGACTTTTAAATCTGAACACAATTCCTATATAAAAAGACTAAGAAAGTATGGTGGTTGTTGGTATGTGATATCAC
GTCTCTACAGAGAGTTTCTTGTCATTATTTCATGATGACTGGTTAAGACCCTGAGCAATTGTAATTTTCCAAAGGCTGTACAATGTTTTCCATTAAACTTGTCACAAGTCCTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006530729 ⟹ XP_006530792

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	113,296,523 - 113,609,339 (+)	NCBI
GRCm38	8	112,569,798 - 112,882,707 (+)	NCBI

Sequence:

show sequence

TGGGGAAGAAAGAGAGAGAGAAAGAGAGAGAGGAGAGGGAGAGAGAGAAGGAAGGAGGAGCAAGGGAGGAGGGAGGAGGGAGAGGAGGAGGAGAGAGCGCGCGCGTGAGAGGAGGGAGGGGGAGGAAA
GAGATCCAGAGAGCTAGAGATACTGAAGACCCAGTCAGTGCTGGGTGAAGGACTGAGGAGAACCTGTCTCCAGCGCTCTGAGAGCCACTCGAGATATTTTGGGGAGCTCAAAAATTATGAATATGGGA
TCTGTCGCTGGAGCTGTTCTCAAGATGTTACTTCTGTTGTCTACTCAAAATTGGAACAGAGTGGAAGCTGGGAATTCATATGACTGTGATGAGCCCCTGGTGTCTGCCTTGCCTCAGGCATCCTTCAG
CAGTTCTTCTGAGCTATCCAGCAGTCACGGTCCTGGATTCGCAAGGCTGAATCGAAGAGACGGAGCTGGTGGCTGGTCCCCACTTGTGTCCAACAAATACCAGTGGCTGCAGATTGACCTTGGAGAGA
GGATGGAAGTCACGTCCGTGGCCACCCAAGGTGGATATGGGAGCTCCAACTGGGTGACCAGCTATCTCCTGATGTTCAGTGATAGTGGAAGGAACTGGAAGCAGTATAGACAAGAAGACAGCATCTGG
GGATTTTCTGGGAACGCGAACGCAGACAGCGTTGTGTACTATAGACTCCAGCCTTCAATCAAAGCCAGGTTCCTACGCTTCATTCCTCTAGAATGGAACCCCAAGGGCAGAATCGGGATGCGCATTGA
GGTGTTCGGGTGTGCATACCGGTCGGTTGTAATTGATCTTGATGGAAAAAGTTCCCTCCTCTACAGATTTGATCAAAACTCCTTGAGTCCAATAAGAGATATCATATCTTTGAAATTTAAAACCATGG
AGAGCGATGGGATCCTACTGCACAGGGCAGGGCCTGCTGGAGATCATATCACATTGGAGTTAAGAAGAGGAAAGCTCTTCTTACTTATTAATTCAGGTGATGCTAGACTGACCTCCAGTTCGACCCTG
ATCAACCTCACACTGGGCAGCCTGCTGGATGATCAGCACTGGCATTCTGTGCTCATCCAGAGACTGGGGAAACAGGTCAACTTTACAGTGGACGAGCACAGGCGTCACTTCCATGCCCAAGGAGAATT
CAATTACCTGGATCTTGATTATGAGCTTTGGAGGGATCTCAGCACCTGCAAAATCAGTGTCCTTGCCATACAAACATTTCCATGGATGTTTAGAGAACCTCTTTTATAATGGCGTAGATGTCATTGGC
TTGGTCAAGGAACACAGCCCTCAGATCATCACCATGGGAAATGCCTCCTTTTCTTGTTCACAACCACAGTCTATGCCTCTGACTTTTCTGAGCCCCAGGAGTTATTTGGTCCTCCCAGCGTCTACTAA
AGAGGAAGCCATTTCAGCCAGCTTTCAATTCCGAACCTGGAATAAGGCGGGACTTCTGCTCTTCAGTGAACTCCAGCTGGTGTCAGGCAGTCTCCTCCTCTTGCTCAGCGATGGAAAACTTAAACTGA
CTCTTTACCAGCCAGGAAAGTCACCCAGTGACATCACAGCAGGTGCAGGCTTAGGTGACGGCCAGTGGCATTCTGTCTCCTTGTCTGCTAAAAGGAATCACCTGAGTGTGGTGGTGGACGGCCACATC
AGCCCTGCTTCTCCTTGGCTGGGGCCCGAGCAGGTTAATTCAGGAGGTGTCTTTTATTTTGGAGGTTGTCCAGACAAAGGCTTTGGATCCAAGTGTAAGAGCCCTCTAGGTGGATTTCAAGGATGCAT
GAGGCTCATCTCCATCAACAACAAAATGGTAGATCTGATTGCAGTCCAGCAGGGGGCCCTTGGCAACTTCAGTGACCTTCAGATAGACTCATGTGGCATCTCAGACAGGTGTTTGCCCAACTCTTGTG
AGCATGGTGGTGAATGTTCTCAGTCTTGGAGCACCTTTCATTGTAACTGCACAAACACGGGGTACACAGGAGCCACTTGTCACAGCTCTGTCTATGAGCAGTCATGTGAAGCCTATAAGCACCAAGGA
AATGCTTCTGGATTCTACTACATAGACTCAGATGGGAGTGGTCCTTTGCAGCCATTCCTCTTATACTGCAATATGACTGAAACGGCATGGACCGTCATGCAGCACAACGGCTCCGACTTGATGAGAGT
CAGGAACACTCACTCTGAGAATGCGCACACTGGGGTGTTTGAGTACACGGCCAGCATGGAACAGCTCCAGGCCGCCATTAACCGGGCGGAGCACTGCCAACAGGAGCTGGTGTATTACTGCAAGAAGT
CGCGCCTCGTTAATCAGCAAGATGGAAGCCCTCGGAGCTGGTGGGTGGGAAGAACCAATGAGACACAGACATATTGGGGTGGTTCCTTGCCTGTGCATCAAAAGTGCACTTGTGGCTTGGAAGGGAAC
TGCATTGATGCCCAGTATCATTGCAACTGTGATGCAGATCTGAACGAATGGACCAATGACACTGGATTCCTCTCCTATAAAGAACATCTGCCTGTCACTAAGATTGTGATTACGGACACAGGACGGCC
CCATTCAGAAGCTGCTTATAAACTGGGGCCTCTGCTCTGCCGGGGAGACAGGCCGTTTTGGAACGCAGCTTCCTTTAATACCGAGGCTTCCTACCTCCACTTTCCCACATTCCATGGCGAGCTCAGTG
CAGATGTGTCCTTCTTTTTCAAGACGACAGCCCTCTCTGGGGTGTTTTTAGAAAACCTGGGAATCACTGACTTCATACGAATAGAATTACGCTCACCCACAACAGTCACCTTTTCATTTGACGTGGGG
AATGGGCCTTTTGAACTCTCTGTGCATTCACCCACTCACTTCAACGACAACCAGTGGCATCATGTGCGAGTGGAAAGGAACATGAAAGAGGCATCCCTTCGGGTGGACGAGCTCCCTCCAAAGATACA
AGCGGCTCCCACGGATGGCCATGTCCTGTTACAGCTCAATAGTCAACTCTTTGTTGGTGGGACCGCCACCAGGCAGAGAGGCTTCCTAGGGTGCATCAGGTCCCTGCAGTTGAATGGGATGGCCCTGG
ATCTGGAAGAAAGAGCCACAGTAACCCCTGGGGTGCAGCCAGGTTGCAGAGGACACTGTGGGAGCTATGGAAAGTTATGTCGCCATGGAGGGAAGTGCAGGGAAAAGCCCAGCGGCTTCTTCTGTGAT
TGCTCTTCCTCTGCCTATGCAGGACCATTCTGCTCCAAAGAGATTTCCGCATATTTTGGATCTGGGTCTTCTGTGATTTACAATTTTCAAGAAAATTATTCTCTAAGCAAGAACTCCAGCTTTCACGC
TGCTTCATTTCATGGGGATATGAAGCTGAGCAGAGAGATGATCAAATTTAGCTTCCGAACCACACGGGCACCAAGCTTGCTGCTTCATATGAGTTCCTTTTATAAAGAATACCTCTCAATTATCATTG
CCAAAAACGGAAGTTTGCAGATACGATACAAGCTAAATAAGTATCACGAACCTGATGTCATCAGCTTTGACTTGAAGAGCATGGCAGATGGGCAGCTTCACCACATAAAGATCAACAGAGAAGAGGGA
ATGGTCTTCGTGGAGATTGATGAGAATACAAGGAGACAAACCTACTTGTCGTCAGGCACAGAATTCAGTGCAGTCAAATCTTTGGTACTGGGCAGAATGCTAGAGTACAGTGATGTAGACCAGGAGAC
TGCATTGGCTGCAGCCCATGGCTTCACAGGCTGCCTCTCTGCAGTGCAGTTCAGCCATATTGCACCTCTGAAGGCTGCTCTGCAACCCGGTCCCCCAGCCCCTGTCACCGTGACAGGGCACGTGACTG
AGTCGAGCTGTGTGGCCCCTTCTGGCACCGATGCCACATCCAGAGAAAGGACGCATTCATTTGCAGATCACTCTGGAACGATGGACGACAGAGAGCCTCTCACTCATGCAATCAAAAGCGACTCTGCA
GTGATTGGAGGTCTGATAGCTGTTGTGATCTTTATCTTGCTTTGTGTCTCTGCCATAGCTGTTCGCATTTATCAGCAGAAAAGGTTATACAAAAGAAATGAGGCAAAAAGGTCAGAGAATGTGGACAG
CGCTGAGGCGGTTTTGAAAAGCGAGCTTCATATTCAGAATGCAGTCGGTGAAAATCAGAAAGAGTATTTCTTCTGATTGGCAATGATCCTCTTAACTTGCAAGGATGAGTTCCTTTTACTAGCCAGGG
GCTCTCAGAGGACGAGAACTGCTCTAACCCTGACCGTACAGGCGATGGATCTGCAGCACGGCCATCTTGCCATGTCCAAGCTCAGGATGGTTCCAGGCAGCCTCCTCTAGGGATGGGCTCCTTCCAGC
CATCATTCTATTAAGAAAGGAGCTCGCTATTGGTGTCCCTTTCCAACTTCTGCACATGATCAAAGCCAAGCTTAACTTGCTTCACAACTATGGTTTTTAAATGTGGAAACTTTAGCCCTTCTCTTCAC
CCTGTAAAACATAAGTTTTGTTAGAGGTAAGAACTCAAAATTGGACTATAAATGGCCTTGCTTTACTTCAGACCAAATGTCCTGTTTGCTTTCGTCTTCACATGGTGTTGTTCATGAGCCTGGAAATG
CTTCTGAGATCCTGTTTGGCTGGTGTTCGCATCTTCAATGGCCAAAAGTCTATACATAAAGCCCCTTTGCCTTTCTCTGTATTACATTCAATACATCAATAGTCTGAAAAATTGTTTTCTTGTCTTTG
GCTTGTTTGTATTGCTCTTTTTCTATTTTACTCCTTTTCTGATACTTTTTAATGCATTTTGTTTTGAGTGTCTGACTTTTAAATCTGAACACAATTCCTATATAAAAAGACTAAGAAAGTATGGTGGT
TGTTGGTATGTGATATCACGTCTCTACAGAGAGTTTCTTGTCATTATTTCATGATGACTGGTTAAGACCCTGAGCAATTGTAATTTTCCAAAGGCTGTACAATGTTTTCCATTAAACTTGTCACAAGT
CCTAA

hide sequence

RefSeq Acc Id:

XM_006530730 ⟹ XP_006530793

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	113,296,523 - 113,609,339 (+)	NCBI
GRCm38	8	112,569,798 - 112,882,707 (+)	NCBI

Sequence:

show sequence

TGGGGAAGAAAGAGAGAGAGAAAGAGAGAGAGGAGAGGGAGAGAGAGAAGGAAGGAGGAGCAAG
GGAGGAGGGAGGAGGGAGAGGAGGAGGAGAGAGCGCGCGCGTGAGAGGAGGGAGGGGGAGGAAAGAGATCCAGAGAGCTAGAGATACTGAAGACCCAGTCAGTGCTGGGTGAAGGACTGAGGAGAACC
TGTCTCCAGCGCTCTGAGAGCCACTCGAGATATTTTGGGGAGCTCAAAAATTATGAATATGGGATCTGTCGCTGGAGCTGTTCTCAAGATGTTACTTCTGTTGTCTACTCAAAATTGGAACAGAGTGG
AAGCTGGGAATTCATATGACTGTGATGAGCCCCTGGTGTCTGCCTTGCCTCAGGCATCCTTCAGCAGTTCTTCTGAGCTATCCAGCAGTCACGGTCCTGGATTCGCAAGGCTGAATCGAAGAGACGGA
GCTGGTGGCTGGTCCCCACTTGTGTCCAACAAATACCAGTGGCTGCAGATTGACCTTGGAGAGAGGATGGAAGTCACGTCCGTGGCCACCCAAGGTGGATATGGGAGCTCCAACTGGGTGACCAGCTA
TCTCCTGATGTTCAGTGATAGTGGAAGGAACTGGAAGCAGTATAGACAAGAAGACAGCATCTGGGGATTTTCTGGGAACGCGAACGCAGACAGCGTTGTGTACTATAGACTCCAGCCTTCAATCAAAG
CCAGGTTCCTACGCTTCATTCCTCTAGAATGGAACCCCAAGGGCAGAATCGGGATGCGCATTGAGGTGTTCGGGTGTGCATACCGGTCGGTTGTAATTGATCTTGATGGAAAAAGTTCCCTCCTCTAC
AGATTTGATCAAAACTCCTTGAGTCCAATAAGAGATATCATATCTTTGAAATTTAAAACCATGGAGAGCGATGGGATCCTACTGCACAGGGCAGGGCCTGCTGGAGATCATATCACATTGGAGTTAAG
AAGAGGAAAGCTCTTCTTACTTATTAATTCAGGTGATGCTAGACTGACCTCCAGTTCGACCCTGATCAACCTCACACTGGGCAGCCTGCTGGATGATCAGCACTGGCATTCTGTGCTCATCCAGAGAC
TGGGGAAACAGGTCAACTTTACAGTGGACGAGCACAGGCGTCACTTCCATGCCCAAGGAGAATTCAATTACCTGGATCTTGATTATGAGATCAGCTTTGGAGGGATCTCAGCACCTGCAAAATCAGTG
TCCTTGCCATACAAACATTTCCATGGATGTTTAGAGAACCTCTTTTATAATGGCGTAGATGTCATTGGCTTGGTCAAGGAACACAGCCCTCAGATCATCACCATGGGAAATGCCTCCTTTTCTTGTTC
ACAACCACAGTCTATGCCTCTGACTTTTCTGAGCCCCAGGAGTTATTTGGTCCTCCCAGCGTCTACTAAAGAGGAAGCCATTTCAGCCAGCTTTCAATTCCGAACCTGGAATAAGGCGGGACTTCTGC
TCTTCAGTGAACTCCAGCTGGTGTCAGGCAGTCTCCTCCTCTTGCTCAGCGATGGAAAACTTAAACTGACTCTTTACCAGCCAGGAAAGTCACCCAGTGACATCACAGCAGGTGCAGGCTTAGGTGAC
GGCCAGTGGCATTCTGTCTCCTTGTCTGCTAAAAGGAATCACCTGAGTGTGGTGGTGGACGGCCACATCAGCCCTGCTTCTCCTTGGCTGGGGCCCGAGCAGGTTAATTCAGGAGGTGTCTTTTATTT
TGGAGGTTGTCCAGACAAAGGCTTTGGATCCAAGTGTAAGAGCCCTCTAGGTGGATTTCAAGGATGCATGAGGCTCATCTCCATCAACAACAAAATGGTAGATCTGATTGCAGTCCAGCAGGGGGCCC
TTGGCAACTTCAGTGACCTTCAGATAGACTCATGTGGCATCTCAGACAGGTGTTTGCCCAACTCTTGTGAGCATGGTGGTGAATGTTCTCAGTCTTGGAGCACCTTTCATTGTAACTGCACAAACACG
GGGTACACAGGAGCCACTTGTCACAGCTCTGTCTATGAGCAGTCATGTGAAGCCTATAAGCACCAAGGAAATGCTTCTGGATTCTACTACATAGACTCAGATGGGAGTGGTCCTTTGCAGCCATTCCT
CTTATACTGCAATATGACTGACTAGTGACGGTCTCCTCTCTTTCTTCCCCCATTTCTGCATACAAGAAACGGCATGGACCGTCATGCAGCACAACGGCTCCGACTTGATGAGAGTCAGGAACACTCAC
TCTGAGAATGCGCACACTGGGGTGTTTGAGTACACGGCCAGCATGGAACAGCTCCAGGCCGCCATTAACCGGGCGGAGCACTGCCAACAGGAGCTGGTGTATTACTGCAAGAAGTCGCGCCTCGTTAA
TCAGCAAGATGGAAGCCCTCGGAGCTGGTGGGTGGGAAGAACCAATGAGACACAGACATATTGGGGTGGTTCCTTGCCTGTGCATCAAAAGTGCACTTGTGGCTTGGAAGGGAACTGCATTGATGCCC
AGTATCATTGCAACTGTGATGCAGATCTGAACGAATGGACCAATGACACTGGATTCCTCTCCTATAAAGAACATCTGCCTGTCACTAAGATTGTGATTACGGACACAGGACGGCCCCATTCAGAAGCT
GCTTATAAACTGGGGCCTCTGCTCTGCCGGGGAGACAGGCCGTTTTGGAACGCAGCTTCCTTTAATACCGAGGCTTCCTACCTCCACTTTCCCACATTCCATGGCGAGCTCAGTGCAGATGTGTCCTT
CTTTTTCAAGACGACAGCCCTCTCTGGGGTGTTTTTAGAAAACCTGGGAATCACTGACTTCATACGAATAGAATTACGCTCACCCACAACAGTCACCTTTTCATTTGACGTGGGGAATGGGCCTTTTG
AACTCTCTGTGCATTCACCCACTCACTTCAACGACAACCAGTGGCATCATGTGCGAGTGGAAAGGAACATGAAAGAGGCATCCCTTCGGGTGGACGAGCTCCCTCCAAAGATACAAGCGGCTCCCACG
GATGGCCATGTCCTGTTACAGCTCAATAGTCAACTCTTTGTTGGTGGGACCGCCACCAGGCAGAGAGGCTTCCTAGGGTGCATCAGGTCCCTGCAGTTGAATGGGATGGCCCTGGATCTGGAAGAAAG
AGCCACAGTAACCCCTGGGGTGCAGCCAGGTTGCAGAGGACACTGTGGGAGCTATGGAAAGTTATGTCGCCATGGAGGGAAGTGCAGGGAAAAGCCCAGCGGCTTCTTCTGTGATTGCTCTTCCTCTG
CCTATGCAGGACCATTCTGCTCCAAAGAGATTTCCGCATATTTTGGATCTGGGTCTTCTGTGATTTACAATTTTCAAGAAAATTATTCTCTAAGCAAGAACTCCAGCTTTCACGCTGCTTCATTTCAT
GGGGATATGAAGCTGAGCAGAGAGATGATCAAATTTAGCTTCCGAACCACACGGGCACCAAGCTTGCTGCTTCATATGAGTTCCTTTTATAAAGAATACCTCTCAATTATCATTGCCAAAAACGGAAG
TTTGCAGATACGATACAAGCTAAATAAGTATCACGAACCTGATGTCATCAGCTTTGACTTGAAGAGCATGGCAGATGGGCAGCTTCACCACATAAAGATCAACAGAGAAGAGGGAATGGTCTTCGTGG
AGATTGATGAGAATACAAGGAGACAAACCTACTTGTCGTCAGGCACAGAATTCAGTGCAGTCAAATCTTTGGTACTGGGCAGAATGCTAGAGTACAGTGATGTAGACCAGGAGACTGCATTGGCTGCA
GCCCATGGCTTCACAGGCTGCCTCTCTGCAGTGCAGTTCAGCCATATTGCACCTCTGAAGGCTGCTCTGCAACCCGGTCCCCCAGCCCCTGTCACCGTGACAGGGCACGTGACTGAGTCGAGCTGTGT
GGCCCCTTCTGGCACCGATGCCACATCCAGAGAAAGGACGCATTCATTTGCAGATCACTCTGGAACGATGGACGACAGAGAGCCTCTCACTCATGCAATCAAAAGCGACTCTGCAGTGATTGGAGGTC
TGATAGCTGTTGTGATCTTTATCTTGCTTTGTGTCTCTGCCATAGCTGTTCGCATTTATCAGCAGAAAAGGTTATACAAAAGAAATGAGGCAAAAAGGTCAGAGAATGTGGACAGCGCTGAGGCGGTT
TTGAAAAGCGAGCTTCATATTCAGAATGCAGTCGGTGAAAATCAGAAAGAGTATTTCTTCTGATTGGCAATGATCCTCTTAACTTGCAAGGATGAGTTCCTTTTACTAGCCAGGGGCTCTCAGAGGAC
GAGAACTGCTCTAACCCTGACCGTACAGGCGATGGATCTGCAGCACGGCCATCTTGCCATGTCCAAGCTCAGGATGGTTCCAGGCAGCCTCCTCTAGGGATGGGCTCCTTCCAGCCATCATTCTATTA
AGAAAGGAGCTCGCTATTGGTGTCCCTTTCCAACTTCTGCACATGATCAAAGCCAAGCTTAACTTGCTTCACAACTATGGTTTTTAAATGTGGAAACTTTAGCCCTTCTCTTCACCCTGTAAAACATA
AGTTTTGTTAGAGGTAAGAACTCAAAATTGGACTATAAATGGCCTTGCTTTACTTCAGACCAAATGTCCTGTTTGCTTTCGTCTTCACATGGTGTTGTTCATGAGCCTGGAAATGCTTCTGAGATCCT
GTTTGGCTGGTGTTCGCATCTTCAATGGCCAAAAGTCTATACATAAAGCCCCTTTGCCTTTCTCTGTATTACATTCAATACATCAATAGTCTGAAAAATTGTTTTCTTGTCTTTGGCTTGTTTGTATT
GCTCTTTTTCTATTTTACTCCTTTTCTGATACTTTTTAATGCATTTTGTTTTGAGTGTCTGACTTTTAAATCTGAACACAATTCCTATATAAAAAGACTAAGAAAGTATGGTGGTTGTTGGTATGTGA
TATCACGTCTCTACAGAGAGTTTCTTGTCATTATTTCATGATGACTGGTTAAGACCCTGAGCAATTGTAATTTTCCAAAGGCTGTACAATGTTTTCCATTAAACTTGTCACAAGTCCTAA

hide sequence

RefSeq Acc Id:

XM_030243313 ⟹ XP_030099173

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	113,296,523 - 113,609,339 (+)	NCBI
GRCm38	8	112,569,798 - 112,882,707 (+)	NCBI

Sequence:

show sequence

TGGGGAAGAAAGAGAGAGAGAAAGAGAGAGAGGAGAGGGAGAGAGAGAAGGAAGGAGGAGCAAGGGAGGAGGGAGGAGGGAGAGGAGGAGGAGAGAGCGCGCGCGTGAGAGGAGGGAGGGGGAGGAAA
GAGATCCAGAGAGCTAGAGATACTGAAGACCCAGTCAGTGCTGGGTGAAGGACTGAGGAGAACCTGTCTCCAGCGCTCTGAGAGCCACTCGAGATATTTTGGGGAGCTCAAAAATTATGAATATGGGA
TCTGTCGCTGGAGCTGTTCTCAAGATGTTACTTCTGTTGTCTACTCAAAATTGGAACAGAGTGGAAGCTGGGAATTCATATGACTGTGATGAGCCCCTGGTGTCTGCCTTGCCTCAGGCATCCTTCAG
CAGTTCTTCTGAGCTATCCAGCAGTCACGGTCCTGGATTCGCAAGGCTGAATCGAAGAGACGGAGCTGGTGGCTGGTCCCCACTTGTGTCCAACAAATACCAGTGGCTGCAGATTGACCTTGGAGAGA
GGATGGAAGTCACGTCCGTGGCCACCCAAGGTGGATATGGGAGCTCCAACTGGGTGACCAGCTATCTCCTGATGTTCAGTGATAGTGGAAGGAACTGGAAGCAGTATAGACAAGAAGACAGCATCTGG
GGATTTTCTGGGAACGCGAACGCAGACAGCGTTGTGTACTATAGACTCCAGCCTTCAATCAAAGCCAGGTTCCTACGCTTCATTCCTCTAGAATGGAACCCCAAGGGCAGAATCGGGATGCGCATTGA
GGTGTTCGGGTGTGCATACCGGTCGGTTGTAATTGATCTTGATGGAAAAAGTTCCCTCCTCTACAGATTTGATCAAAACTCCTTGAGTCCAATAAGAGATATCATATCTTTGAAATTTAAAACCATGG
AGAGCGATGGGATCCTACTGCACAGGGCAGGGCCTGCTGGAGATCATATCACATTGGAGTTAAGAAGAGGAAAGCTCTTCTTACTTATTAATTCAGGTGATGCTAGACTGACCTCCAGTTCGACCCTG
ATCAACCTCACACTGGGCAGCCTGCTGGATGATCAGCACTGGCATTCTGTGCTCATCCAGAGACTGGGGAAACAGGTCAACTTTACAGTGGACGAGCACAGGCGTCACTTCCATGCCCAAGGAGAATT
CAATTACCTGGATCTTGATTATGAGCTTTGGAGGGATCTCAGCACCTGCAAAATCAGTGTCCTTGCCATACAAACATTTCCATGGATGTTTAGAGAACCTCTTTTATAATGGCGTAGATGTCATTGGC
TTGGTCAAGGAACACAGCCCTCAGATCATCACCATGGGAAATGCCTCCTTTTCTTGTTCACAACCACAGTCTATGCCTCTGACTTTTCTGAGCCCCAGGAGTTATTTGGTCCTCCCAGCGTCTACTAA
AGAGGAAGCCATTTCAGCCAGCTTTCAATTCCGAACCTGGAATAAGGCGGGACTTCTGCTCTTCAGTGAACTCCAGCTGGTGTCAGGCAGTCTCCTCCTCTTGCTCAGCGATGGAAAACTTAAACTGA
CTCTTTACCAGCCAGGAAAGTCACCCAGTGACATCACAGCAGGTGCAGGCTTAGGTGACGGCCAGTGGCATTCTGTCTCCTTGTCTGCTAAAAGGAATCACCTGAGTGTGGTGGTGGACGGCCACATC
AGCCCTGCTTCTCCTTGGCTGGGGCCCGAGCAGGTTAATTCAGGAGGTGTCTTTTATTTTGGAGGTTGTCCAGACAAAGGCTTTGGATCCAAGTGTAAGAGCCCTCTAGGTGGATTTCAAGGATGCAT
GAGGCTCATCTCCATCAACAACAAAATGGTAGATCTGATTGCAGTCCAGCAGGGGGCCCTTGGCAACTTCAGTGACCTTCAGATAGACTCATGTGGCATCTCAGACAGGTGTTTGCCCAACTCTTGTG
AGCATGGTGGTGAATGTTCTCAGTCTTGGAGCACCTTTCATTGTAACTGCACAAACACGGGGTACACAGGAGCCACTTGTCACAGCTCTGTCTATGAGCAGTCATGTGAAGCCTATAAGCACCAAGGA
AATGCTTCTGGATTCTACTACATAGACTCAGATGGGAGTGGTCCTTTGCAGCCATTCCTCTTATACTGCAATATGACTGACTAGTGACGGTCTCCTCTCTTTCTTCCCCCATTTCTGCATACAAGAAA
CGGCATGGACCGTCATGCAGCACAACGGCTCCGACTTGATGAGAGTCAGGAACACTCACTCTGAGAATGCGCACACTGGGGTGTTTGAGTACACGGCCAGCATGGAACAGCTCCAGGCCGCCATTAAC
CGGGCGGAGCACTGCCAACAGGAGCTGGTGTATTACTGCAAGAAGTCGCGCCTCGTTAATCAGCAAGATGGAAGCCCTCGGAGCTGGTGGGTGGGAAGAACCAATGAGACACAGACATATTGGGGTGG
TTCCTTGCCTGTGCATCAAAAGTGCACTTGTGGCTTGGAAGGGAACTGCATTGATGCCCAGTATCATTGCAACTGTGATGCAGATCTGAACGAATGGACCAATGACACTGGATTCCTCTCCTATAAAG
AACATCTGCCTGTCACTAAGATTGTGATTACGGACACAGGACGGCCCCATTCAGAAGCTGCTTATAAACTGGGGCCTCTGCTCTGCCGGGGAGACAGGCCGTTTTGGAACGCAGCTTCCTTTAATACC
GAGGCTTCCTACCTCCACTTTCCCACATTCCATGGCGAGCTCAGTGCAGATGTGTCCTTCTTTTTCAAGACGACAGCCCTCTCTGGGGTGTTTTTAGAAAACCTGGGAATCACTGACTTCATACGAAT
AGAATTACGCTCACCCACAACAGTCACCTTTTCATTTGACGTGGGGAATGGGCCTTTTGAACTCTCTGTGCATTCACCCACTCACTTCAACGACAACCAGTGGCATCATGTGCGAGTGGAAAGGAACA
TGAAAGAGGCATCCCTTCGGGTGGACGAGCTCCCTCCAAAGATACAAGCGGCTCCCACGGATGGCCATGTCCTGTTACAGCTCAATAGTCAACTCTTTGTTGGTGGGACCGCCACCAGGCAGAGAGGC
TTCCTAGGGTGCATCAGGTCCCTGCAGTTGAATGGGATGGCCCTGGATCTGGAAGAAAGAGCCACAGTAACCCCTGGGGTGCAGCCAGGTTGCAGAGGACACTGTGGGAGCTATGGAAAGTTATGTCG
CCATGGAGGGAAGTGCAGGGAAAAGCCCAGCGGCTTCTTCTGTGATTGCTCTTCCTCTGCCTATGCAGGACCATTCTGCTCCAAAGAGATTTCCGCATATTTTGGATCTGGGTCTTCTGTGATTTACA
ATTTTCAAGAAAATTATTCTCTAAGCAAGAACTCCAGCTTTCACGCTGCTTCATTTCATGGGGATATGAAGCTGAGCAGAGAGATGATCAAATTTAGCTTCCGAACCACACGGGCACCAAGCTTGCTG
CTTCATATGAGTTCCTTTTATAAAGAATACCTCTCAATTATCATTGCCAAAAACGGAAGTTTGCAGATACGATACAAGCTAAATAAGTATCACGAACCTGATGTCATCAGCTTTGACTTGAAGAGCAT
GGCAGATGGGCAGCTTCACCACATAAAGATCAACAGAGAAGAGGGAATGGTCTTCGTGGAGATTGATGAGAATACAAGGAGACAAACCTACTTGTCGTCAGGCACAGAATTCAGTGCAGTCAAATCTT
TGGTACTGGGCAGAATGCTAGAGTACAGTGATGTAGACCAGGAGACTGCATTGGCTGCAGCCCATGGCTTCACAGGCTGCCTCTCTGCAGTGCAGTTCAGCCATATTGCACCTCTGAAGGCTGCTCTG
CAACCCGGTCCCCCAGCCCCTGTCACCGTGACAGGGCACGTGACTGAGTCGAGCTGTGTGGCCCCTTCTGGCACCGATGCCACATCCAGAGAAAGGACGCATTCATTTGCAGATCACTCTGGAACGAT
GGACGACAGAGAGCCTCTCACTCATGCAATCAAAAGCGACTCTGCAGTGATTGGAGGTCTGATAGCTGTTGTGATCTTTATCTTGCTTTGTGTCTCTGCCATAGCTGTTCGCATTTATCAGCAGAAAA
GGTTATACAAAAGAAATGAGGCAAAAAGGTCAGAGAATGTGGACAGCGCTGAGGCGGTTTTGAAAAGCGAGCTTCATATTCAGAATGCAGTCGGTGAAAATCAGAAAGAGTATTTCTTCTGATTGGCA
ATGATCCTCTTAACTTGCAAGGATGAGTTCCTTTTACTAGCCAGGGGCTCTCAGAGGACGAGAACTGCTCTAACCCTGACCGTACAGGCGATGGATCTGCAGCACGGCCATCTTGCCATGTCCAAGCT
CAGGATGGTTCCAGGCAGCCTCCTCTAGGGATGGGCTCCTTCCAGCCATCATTCTATTAAGAAAGGAGCTCGCTATTGGTGTCCCTTTCCAACTTCTGCACATGATCAAAGCCAAGCTTAACTTGCTT
CACAACTATGGTTTTTAAATGTGGAAACTTTAGCCCTTCTCTTCACCCTGTAAAACATAAGTTTTGTTAGAGGTAAGAACTCAAAATTGGACTATAAATGGCCTTGCTTTACTTCAGACCAAATGTCC
TGTTTGCTTTCGTCTTCACATGGTGTTGTTCATGAGCCTGGAAATGCTTCTGAGATCCTGTTTGGCTGGTGTTCGCATCTTCAATGGCCAAAAGTCTATACATAAAGCCCCTTTGCCTTTCTCTGTAT
TACATTCAATACATCAATAGTCTGAAAAATTGTTTTCTTGTCTTTGGCTTGTTTGTATTGCTCTTTTTCTATTTTACTCCTTTTCTGATACTTTTTAATGCATTTTGTTTTGAGTGTCTGACTTTTAA
ATCTGAACACAATTCCTATATAAAAAGACTAAGAAAGTATGGTGGTTGTTGGTATGTGATATCACGTCTCTACAGAGAGTTTCTTGTCATTATTTCATGATGACTGGTTAAGACCCTGAGCAATTGTA
ATTTTCCAAAGGCTGTACAATGTTTTCCATTAAACTTGTCACAAGTCCTAA

hide sequence


Protein RefSeqs	NP_569724	(Get FASTA)	NCBI Sequence Viewer
	XP_006530792	(Get FASTA)	NCBI Sequence Viewer
	XP_006530793	(Get FASTA)	NCBI Sequence Viewer
	XP_030099173	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG52890	(Get FASTA)	NCBI Sequence Viewer
	AAH34628	(Get FASTA)	NCBI Sequence Viewer
	BAC35446	(Get FASTA)	NCBI Sequence Viewer
	BAD32533	(Get FASTA)	NCBI Sequence Viewer
	BAE25200	(Get FASTA)	NCBI Sequence Viewer
	EDL11532	(Get FASTA)	NCBI Sequence Viewer
	EDL11533	(Get FASTA)	NCBI Sequence Viewer
	EDL11534	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000034225
	ENSMUSP00000034225.7
GenBank Protein	Q99P47	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_569724 ⟸ NM_130457
- Peptide Label:	precursor
- UniProtKB:	Q8K002 (UniProtKB/Swiss-Prot), Q99P47 (UniProtKB/Swiss-Prot), D3YWB9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNMGSVAGAVLKMLLLLSTQNWNRVEAGNSYDCDEPLVSALPQASFSSSSELSSSHGPGFARLNRRDGAGGWSPLVSNKYQWLQIDLGERMEVTSVATQGGYGSSNWVTSYLLMFSDSGRNWKQYRQE DSIWGFSGNANADSVVYYRLQPSIKARFLRFIPLEWNPKGRIGMRIEVFGCAYRSVVIDLDGKSSLLYRFDQNSLSPIRDIISLKFKTMESDGILLHRAGPAGDHITLELRRGKLFLLINSGDARLTS SSTLINLTLGSLLDDQHWHSVLIQRLGKQVNFTVDEHRRHFHAQGEFNYLDLDYEISFGGISAPAKSVSLPYKHFHGCLENLFYNGVDVIGLVKEHSPQIITMGNASFSCSQPQSMPLTFLSPRSYLV LPASTKEEAISASFQFRTWNKAGLLLFSELQLVSGSLLLLLSDGKLKLTLYQPGKSPSDITAGAGLGDGQWHSVSLSAKRNHLSVVVDGHISPASPWLGPEQVNSGGVFYFGGCPDKGFGSKCKSPLG GFQGCMRLISINNKMVDLIAVQQGALGNFSDLQIDSCGISDRCLPNSCEHGGECSQSWSTFHCNCTNTGYTGATCHSSVYEQSCEAYKHQGNASGFYYIDSDGSGPLQPFLLYCNMTETAWTVMQHNG SDLMRVRNTHSENAHTGVFEYTASMEQLQAAINRAEHCQQELVYYCKKSRLVNQQDGSPRSWWVGRTNETQTYWGGSLPVHQKCTCGLEGNCIDAQYHCNCDADLNEWTNDTGFLSYKEHLPVTKIVI TDTGRPHSEAAYKLGPLLCRGDRPFWNAASFNTEASYLHFPTFHGELSADVSFFFKTTALSGVFLENLGITDFIRIELRSPTTVTFSFDVGNGPFELSVHSPTHFNDNQWHHVRVERNMKEASLRVDE LPPKIQAAPTDGHVLLQLNSQLFVGGTATRQRGFLGCIRSLQLNGMALDLEERATVTPGVQPGCRGHCGSYGKLCRHGGKCREKPSGFFCDCSSSAYAGPFCSKEISAYFGSGSSVIYNFQENYSLSK NSSFHAASFHGDMKLSREMIKFSFRTTRAPSLLLHMSSFYKEYLSIIIAKNGSLQIRYKLNKYHEPDVISFDLKSMADGQLHHIKINREEGMVFVEIDENTRRQTYLSSGTEFSAVKSLVLGRMLEYS DVDQETALAAAHGFTGCLSAVQFSHIAPLKAALQPGPPAPVTVTGHVTESSCVAPSGTDATSRERTHSFADHSGTMDDREPLTHAIKSDSAVIGGLIAVVIFILLCVSAIAVRIYQQKRLYKRNEAKR SENVDSAEAVLKSELHIQNAVGENQKEYFF hide sequence

RefSeq Acc Id:

XP_006530792 ⟸ XM_006530729

- Peptide Label:

isoform X1

- Sequence:

show sequence

MISTGILCSSRDWGNRSTLQWTSTGVTSMPKENSITWILIMSFGGISAPAKSVSLPYKHFHGCL
ENLFYNGVDVIGLVKEHSPQIITMGNASFSCSQPQSMPLTFLSPRSYLVLPASTKEEAISASFQFRTWNKAGLLLFSELQLVSGSLLLLLSDGKLKLTLYQPGKSPSDITAGAGLGDGQWHSVSLSAK
RNHLSVVVDGHISPASPWLGPEQVNSGGVFYFGGCPDKGFGSKCKSPLGGFQGCMRLISINNKMVDLIAVQQGALGNFSDLQIDSCGISDRCLPNSCEHGGECSQSWSTFHCNCTNTGYTGATCHSSV
YEQSCEAYKHQGNASGFYYIDSDGSGPLQPFLLYCNMTETAWTVMQHNGSDLMRVRNTHSENAHTGVFEYTASMEQLQAAINRAEHCQQELVYYCKKSRLVNQQDGSPRSWWVGRTNETQTYWGGSLP
VHQKCTCGLEGNCIDAQYHCNCDADLNEWTNDTGFLSYKEHLPVTKIVITDTGRPHSEAAYKLGPLLCRGDRPFWNAASFNTEASYLHFPTFHGELSADVSFFFKTTALSGVFLENLGITDFIRIELR
SPTTVTFSFDVGNGPFELSVHSPTHFNDNQWHHVRVERNMKEASLRVDELPPKIQAAPTDGHVLLQLNSQLFVGGTATRQRGFLGCIRSLQLNGMALDLEERATVTPGVQPGCRGHCGSYGKLCRHGG
KCREKPSGFFCDCSSSAYAGPFCSKEISAYFGSGSSVIYNFQENYSLSKNSSFHAASFHGDMKLSREMIKFSFRTTRAPSLLLHMSSFYKEYLSIIIAKNGSLQIRYKLNKYHEPDVISFDLKSMADG
QLHHIKINREEGMVFVEIDENTRRQTYLSSGTEFSAVKSLVLGRMLEYSDVDQETALAAAHGFTGCLSAVQFSHIAPLKAALQPGPPAPVTVTGHVTESSCVAPSGTDATSRERTHSFADHSGTMDDR
EPLTHAIKSDSAVIGGLIAVVIFILLCVSAIAVRIYQQKRLYKRNEAKRSENVDSAEAVLKSELHIQNAVGENQKEYFF

hide sequence

RefSeq Acc Id:

XP_006530793 ⟸ XM_006530730

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQHNGSDLMRVRNTHSENAHTGVFEYTASMEQLQAAINRAEHCQQELVYYCKKSRLVNQQDGSPRSWWVGRTNETQTYWGGSLPVHQKCTCGLEGNCIDAQYHCNCDADLNEWTNDTGFLSYKEHLPV
TKIVITDTGRPHSEAAYKLGPLLCRGDRPFWNAASFNTEASYLHFPTFHGELSADVSFFFKTTALSGVFLENLGITDFIRIELRSPTTVTFSFDVGNGPFELSVHSPTHFNDNQWHHVRVERNMKEAS
LRVDELPPKIQAAPTDGHVLLQLNSQLFVGGTATRQRGFLGCIRSLQLNGMALDLEERATVTPGVQPGCRGHCGSYGKLCRHGGKCREKPSGFFCDCSSSAYAGPFCSKEISAYFGSGSSVIYNFQEN
YSLSKNSSFHAASFHGDMKLSREMIKFSFRTTRAPSLLLHMSSFYKEYLSIIIAKNGSLQIRYKLNKYHEPDVISFDLKSMADGQLHHIKINREEGMVFVEIDENTRRQTYLSSGTEFSAVKSLVLGR
MLEYSDVDQETALAAAHGFTGCLSAVQFSHIAPLKAALQPGPPAPVTVTGHVTESSCVAPSGTDATSRERTHSFADHSGTMDDREPLTHAIKSDSAVIGGLIAVVIFILLCVSAIAVRIYQQKRLYKR
NEAKRSENVDSAEAVLKSELHIQNAVGENQKEYFF

hide sequence

RefSeq Acc Id:	XP_030099173 ⟸ XM_030243313
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSMUSP00000112511 ⟸ ENSMUST00000118171

Protein Domains

EGF-like F5/8 type C Fibrinogen C-terminal Laminin G Laminin G-like

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q99P47-F1-model_v2	AlphaFold	Q99P47	1-1310	view protein structure

RGD ID:

8668347

Promoter ID:

EPDNEW_M12204

Type:

multiple initiation site

Name:

Cntnap4_1

Description:

Mus musculus contactin associated protein-like 4 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	112,570,051 - 112,570,111	EPDNEW

RGD ID:

6842955

Promoter ID:

MM_KWN:55808

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

ENSMUST00000079307, ENSMUST00000118171, NM_130457, OTTMUST00000076705, OTTMUST00000076707, UC009NNJ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	115,093,531 - 115,094,031 (+)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000031772	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000034225	ENTREZGENE
	ENSMUST00000034225.7	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.120.1000	UniProtKB/Swiss-Prot
	2.60.120.200	UniProtKB/Swiss-Prot
	Galactose-binding domain-like	UniProtKB/Swiss-Prot
	Laminin	UniProtKB/Swiss-Prot
InterPro	ConA-like_dom_sf	UniProtKB/Swiss-Prot
	EGF-like_dom	UniProtKB/Swiss-Prot
	FA58C	UniProtKB/Swiss-Prot
	Fibrinogen-like_C	UniProtKB/Swiss-Prot
	Fibrinogen_a/b/g_C_dom	UniProtKB/Swiss-Prot
	Galactose-bd-like_sf	UniProtKB/Swiss-Prot
	Laminin_G	UniProtKB/Swiss-Prot
	Neurexin-related_CASP	UniProtKB/Swiss-Prot
KEGG Report	mmu:170571	UniProtKB/Swiss-Prot
MGD	MGI:2183572	ENTREZGENE
NCBI Gene	170571	ENTREZGENE
PANTHER	PIKACHURIN-LIKE PROTEIN	UniProtKB/Swiss-Prot
	PTHR15036:SF40	UniProtKB/Swiss-Prot
Pfam	F5_F8_type_C	UniProtKB/Swiss-Prot
	Laminin_G_2	UniProtKB/Swiss-Prot
PhenoGen	Cntnap4	PhenoGen
PROSITE	EGF_3	UniProtKB/Swiss-Prot
	FA58C_1	UniProtKB/Swiss-Prot
	FA58C_2	UniProtKB/Swiss-Prot
	FA58C_3	UniProtKB/Swiss-Prot
	FIBRINOGEN_C_2	UniProtKB/Swiss-Prot
	LAM_G_DOMAIN	UniProtKB/Swiss-Prot
SMART	EGF	UniProtKB/Swiss-Prot
	FA58C	UniProtKB/Swiss-Prot
	LamG	UniProtKB/Swiss-Prot
Superfamily-SCOP	EGF/Laminin	UniProtKB/Swiss-Prot
	SSF49785	UniProtKB/Swiss-Prot
	SSF49899	UniProtKB/Swiss-Prot
	SSF56496	UniProtKB/Swiss-Prot
UniProt	CNTP4_MOUSE	UniProtKB/Swiss-Prot
	D3YWB9	ENTREZGENE, UniProtKB/TrEMBL
	Q69ZB1_MOUSE	UniProtKB/TrEMBL
	Q8BPP6_MOUSE	UniProtKB/TrEMBL
	Q8K002	ENTREZGENE
	Q99P47	ENTREZGENE
UniProt Secondary	Q8K002	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - CTD

Mammalian Phenotype

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Imported Disease Annotations - CTD

Mammalian Phenotype