Tent2 (terminal nucleotidyltransferase 2) - Rat Genome Database

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Gene: Tent2 (terminal nucleotidyltransferase 2) Mus musculus
Analyze
Symbol: Tent2
Name: terminal nucleotidyltransferase 2
RGD ID: 1315055
MGI Page MGI
Description: Enables poly(A) RNA polymerase activity. Involved in target-directed miRNA degradation. Acts upstream of or within hematopoietic progenitor cell differentiation. Located in nucleus. Is expressed in embryo. Orthologous to human TENT2 (terminal nucleotidyltransferase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 8030446C20Rik; AI649009; cytoplasmic poly(A) polymerase; GLD-2; Gld2; mGLD-2; Pa; PAP associated domain containing 4; PAP-associated domain-containing protein 4; Papd4; poly(A) RNA polymerase GLD2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Tent2-ps1   Tent2-ps2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391393,282,363 - 93,330,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1393,282,790 - 93,328,893 (-)EnsemblGRCm39 Ensembl
GRCm381393,145,855 - 93,192,435 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1393,146,282 - 93,192,385 (-)EnsemblGRCm38mm10GRCm38
MGSCv371393,917,355 - 93,962,238 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361394,248,153 - 94,293,036 (-)NCBIMGSCv36mm8
Celera1396,760,820 - 96,805,025 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1347.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16325797   PMID:16783635   PMID:17927953  
PMID:18799693   PMID:19240131   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22727665   PMID:22922362   PMID:24029230   PMID:24457600   PMID:24644291   PMID:27495319   PMID:29887379  
PMID:32954964  


Genomics

Comparative Map Data
Tent2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391393,282,363 - 93,330,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1393,282,790 - 93,328,893 (-)EnsemblGRCm39 Ensembl
GRCm381393,145,855 - 93,192,435 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1393,146,282 - 93,192,385 (-)EnsemblGRCm38mm10GRCm38
MGSCv371393,917,355 - 93,962,238 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361394,248,153 - 94,293,036 (-)NCBIMGSCv36mm8
Celera1396,760,820 - 96,805,025 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1347.81NCBI
TENT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38579,612,441 - 79,688,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl579,612,120 - 79,688,246 (+)EnsemblGRCh38hg38GRCh38
GRCh37578,908,264 - 78,984,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36578,944,152 - 79,017,858 (+)NCBINCBI36Build 36hg18NCBI36
Build 34578,944,151 - 79,017,858NCBI
Celera574,808,017 - 74,882,249 (+)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef574,116,241 - 74,190,376 (+)NCBIHuRef
CHM1_1578,341,332 - 78,415,539 (+)NCBICHM1_1
T2T-CHM13v2.0580,096,704 - 80,172,520 (+)NCBIT2T-CHM13v2.0
Tent2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8226,115,150 - 26,167,465 (-)NCBIGRCr8
mRatBN7.2224,380,135 - 24,432,099 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl224,380,225 - 24,432,099 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx231,408,717 - 31,459,235 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0229,509,010 - 29,559,528 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0224,338,226 - 24,389,040 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0222,746,290 - 22,798,252 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl222,747,547 - 22,798,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0241,944,033 - 41,996,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4223,419,885 - 23,471,423 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1223,340,255 - 23,391,792 (-)NCBI
Celera220,461,236 - 20,512,260 (-)NCBICelera
Cytogenetic Map2q12NCBI
Tent2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542521,517,755 - 21,576,068 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542521,518,154 - 21,576,068 (-)NCBIChiLan1.0ChiLan1.0
TENT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2435,613,532 - 35,687,409 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1533,767,158 - 33,841,032 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0535,622,645 - 35,696,451 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1535,893,841 - 35,966,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl535,893,841 - 35,966,932 (-)Ensemblpanpan1.1panPan2
TENT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,273,188 - 27,335,897 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,274,519 - 27,335,783 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha328,512,967 - 28,575,608 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0327,192,100 - 27,254,836 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,192,104 - 27,254,724 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,132,007 - 27,194,667 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,108,816 - 27,171,462 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,389,466 - 27,452,121 (-)NCBIUU_Cfam_GSD_1.0
Tent2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213183,393,711 - 183,457,412 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365497,408,563 - 7,463,895 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365497,401,532 - 7,465,264 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl288,328,258 - 88,388,241 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1288,328,250 - 88,388,242 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2290,128,225 - 90,182,371 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TENT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1473,825,537 - 73,899,849 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl473,825,557 - 73,901,840 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604922,672,749 - 22,747,063 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tent2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248694,089,282 - 4,147,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248694,089,253 - 4,148,455 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tent2
1205 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:46
Interacting mature miRNAs:54
Transcripts:ENSMUST00000048702
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
12879495Fexq1_mfear expression QTL 1 (mouse)137826885895836553Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
12880402Emlq1_memotional learning QTL 1 (mouse)137810885896866553Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
1301610Dps1_mdelta power in slow-wave sleep 1 (mouse)Not determined137719586295730894Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse

Markers in Region
AI465335  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381393,157,477 - 93,157,602UniSTSGRCm38
MGSCv371393,927,432 - 93,927,557UniSTSGRCm37
Cytogenetic Map13C3UniSTS
Whitehead/MRC_RH13797.58UniSTS
AI649009  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381393,147,613 - 93,148,949UniSTSGRCm38
GRCm38555,625,450 - 55,625,571UniSTSGRCm38
MGSCv37556,016,689 - 56,016,810UniSTSGRCm37
MGSCv371393,917,568 - 93,918,904UniSTSGRCm37
Celera552,997,943 - 52,998,064UniSTS
Celera1396,761,033 - 96,762,370UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map13C3UniSTS
Whitehead/MRC_RH5792.39UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_154997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC120347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC130217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM419011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000048702   ⟹   ENSMUSP00000048124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1393,282,791 - 93,328,791 (-)Ensembl
GRCm38.p6 Ensembl1393,146,283 - 93,192,283 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1393,284,126 - 93,291,714 (-)Ensembl
GRCm38.p6 Ensembl1393,147,618 - 93,155,206 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224464   ⟹   ENSMUSP00000153060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1393,320,587 - 93,328,619 (-)Ensembl
GRCm38.p6 Ensembl1393,184,079 - 93,192,111 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224545   ⟹   ENSMUSP00000153339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1393,312,892 - 93,328,643 (-)Ensembl
GRCm38.p6 Ensembl1393,176,384 - 93,192,135 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225868   ⟹   ENSMUSP00000153703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1393,282,790 - 93,328,893 (-)Ensembl
GRCm38.p6 Ensembl1393,146,282 - 93,192,385 (-)Ensembl
Ensembl Acc Id: ENSMUST00000226081   ⟹   ENSMUSP00000153685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1393,294,332 - 93,304,937 (-)Ensembl
GRCm38.p6 Ensembl1393,157,824 - 93,168,429 (-)Ensembl
RefSeq Acc Id: NM_001361536   ⟹   NP_001348465
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391393,282,363 - 93,328,925 (-)NCBI
GRCm381393,145,855 - 93,192,417 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361537   ⟹   NP_001348466
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391393,282,363 - 93,328,925 (-)NCBI
GRCm381393,145,855 - 93,192,417 (-)NCBI
Sequence:
RefSeq Acc Id: NM_133905   ⟹   NP_598666
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391393,282,363 - 93,328,925 (-)NCBI
GRCm381393,145,855 - 93,192,417 (-)NCBI
MGSCv371393,917,355 - 93,962,238 (-)RGD
Celera1396,760,820 - 96,805,025 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_154997
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391393,282,363 - 93,328,925 (-)NCBI
GRCm381393,145,855 - 93,192,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517510   ⟹   XP_006517573
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391393,282,790 - 93,330,662 (-)NCBI
GRCm381393,146,282 - 93,192,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247077   ⟹   XP_030102937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391393,282,790 - 93,330,662 (-)NCBI
GRCm381393,146,282 - 93,191,862 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780738
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391393,282,790 - 93,330,662 (-)NCBI
GRCm381393,146,282 - 93,192,435 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937923
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391393,282,790 - 93,330,662 (-)NCBI
Sequence:
RefSeq Acc Id: NP_598666   ⟸   NM_133905
- Peptide Label: isoform 1
- UniProtKB: A4F5H0 (UniProtKB/Swiss-Prot),   Q8CCH5 (UniProtKB/Swiss-Prot),   Q91YI6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517573   ⟸   XM_006517510
- Peptide Label: isoform X1
- UniProtKB: A4F5H0 (UniProtKB/Swiss-Prot),   Q8CCH5 (UniProtKB/Swiss-Prot),   Q91YI6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001348465   ⟸   NM_001361536
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001348466   ⟸   NM_001361537
- Peptide Label: isoform 1
- UniProtKB: Q91YI6 (UniProtKB/Swiss-Prot),   A4F5H0 (UniProtKB/Swiss-Prot),   Q8CCH5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030102937   ⟸   XM_030247077
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000048124   ⟸   ENSMUST00000048702
Ensembl Acc Id: ENSMUSP00000153703   ⟸   ENSMUST00000225868
Ensembl Acc Id: ENSMUSP00000153339   ⟸   ENSMUST00000224545
Ensembl Acc Id: ENSMUSP00000153060   ⟸   ENSMUST00000224464
Ensembl Acc Id: ENSMUSP00000153685   ⟸   ENSMUST00000226081
Protein Domains
PAP-associated

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91YI6-F1-model_v2 AlphaFold Q91YI6 1-484 view protein structure

Promoters
RGD ID:8681000
Promoter ID:EPDNEW_M18531
Type:initiation region
Name:Papd4_1
Description:Mus musculus PAP associated domain containing 4 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381393,192,254 - 93,192,314EPDNEW
RGD ID:6824218
Promoter ID:MM_KWN:14909
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4
Transcripts:UC007RKZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361393,956,016 - 93,956,516 (-)MPROMDB
RGD ID:6824217
Promoter ID:MM_KWN:14910
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_133905
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361393,961,796 - 93,962,707 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2140950 AgrOrtholog
Ensembl Genes ENSMUSG00000042167 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048702 ENTREZGENE
  ENSMUST00000048702.7 UniProtKB/Swiss-Prot
  ENSMUST00000224464.2 UniProtKB/TrEMBL
  ENSMUST00000224545.2 UniProtKB/TrEMBL
  ENSMUST00000225868 ENTREZGENE
  ENSMUST00000225868.2 UniProtKB/Swiss-Prot
  ENSMUST00000226081.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/Swiss-Prot
InterPro MTPAP-like_central UniProtKB/Swiss-Prot
  NT_sf UniProtKB/Swiss-Prot
  PAP_assoc UniProtKB/Swiss-Prot
KEGG Report mmu:100715 UniProtKB/Swiss-Prot
MGD MGI:2140950 ENTREZGENE
NCBI Gene 100715 ENTREZGENE
PANTHER POLY A POLYMERASE CID PAP -RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLY(A) RNA POLYMERASE GLD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MTPAP-like_central UniProtKB/Swiss-Prot
  PAP_assoc UniProtKB/Swiss-Prot
PhenoGen Tent2 PhenoGen
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81301 UniProtKB/Swiss-Prot
UniProt A0A286YCM6_MOUSE UniProtKB/TrEMBL
  A0A286YDA7_MOUSE UniProtKB/TrEMBL
  A0A286YED5_MOUSE UniProtKB/TrEMBL
  A4F5H0 ENTREZGENE
  GLD2_MOUSE UniProtKB/Swiss-Prot
  Q8CCH5 ENTREZGENE
  Q91YI6 ENTREZGENE
UniProt Secondary A4F5H0 UniProtKB/Swiss-Prot
  Q8CCH5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-08-14 Tent2  terminal nucleotidyltransferase 2  Papd4  PAP associated domain containing 4  Symbol and/or name change 5135510 APPROVED