1700009N14Rik (RIKEN cDNA 1700009N14 gene)

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Gene: 1700009N14Rik (RIKEN cDNA 1700009N14 gene) Mus musculus

Analyze

No known orthologs.

Symbol:

1700009N14Rik

Name:

RIKEN cDNA 1700009N14 gene

RGD ID:

1314673

MGI Page

MGI

Description:

Enables protein domain specific binding activity. Predicted to be involved in protein import into nucleus and ribosomal subunit export from nucleus. Predicted to be active in cytoplasm and nucleus. Is expressed in brain ventricular layer; orbito-sphenoid; submandibular gland primordium; and vibrissa.

Type:

protein-coding

RefSeq Status:

PREDICTED

Previously known as:

AI429145; hypothetical protein LOC75471; novel Ras protein; RP23-143B14.1; uncharacterized protein LOC75471

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	RAN (RAN, member RAS oncogene family)	HGNC	OrthoDB, Panther, PhylomeDB, Treefam
Alliance orthologs ³
Rattus norvegicus (Norway rat):	1700009N14Rikl (RIKEN cDNA 1700009N14 gene like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ran (RAN, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	GSP1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ran	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ran-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GSP2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ran	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|PANTHER)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	39,450,293 - 39,451,780 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	39,450,295 - 39,451,776 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	39,450,293 - 39,451,780 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	39,450,295 - 39,451,776 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	39,397,326 - 39,398,813 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	39,638,964 - 39,640,451 (+)	NCBI		MGSCv36	mm8
Celera	4	39,139,061 - 39,140,548 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	20.16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein import into nucleus (IBA)

ribosomal subunit export from nucleus (IBA)

Cellular Component

cytoplasm (IBA)

nucleus (IBA)

Molecular Function

GTPase activity (IBA)

protein domain specific binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:17984326	PMID:21267068	PMID:21873635	PMID:30713523

Genomics

Variants

Variants in 1700009N14Rik
37 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	87
Interacting mature miRNAs:	89
Transcripts:	ENSMUST00000029955
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301203	Alcp8_m	alcohol preference locus 8 (mouse)			Not determined		4	17395160	51395290	Mouse
1301586	Stheal3_m	soft tissue heal 3 (mouse)			Not determined		4	28658442	62658566	Mouse
10401115	Pgia35_m	proteoglycan induced arthritis 35 (mouse)			Not determined		4	12562377	46562509	Mouse
39128211	Lwq22_m	liver weight QTL 22 (mouse)					4	17892616	88982216	Mouse
1558992	Ses8_m	salmonella enteritidis susceptibility 8 (mouse)			Not determined		4	8683240	42683429	Mouse
4141302	Ssrq5_m	stress response QTL 5 (mouse)			Not determined			8683240	42683430	Mouse
4141555	Nbwa2_m	NZB and NZW autoimmunity 2 (mouse)			Not determined		4	17892515	51892635	Mouse
1300574	Im2_m	immunoregulatory 2 (mouse)			Not determined		4	28077682	62077816	Mouse
12880405	Jcdq1_m	joint cartilage degeneration QTL 1 (mouse)					4	12562377	46562509	Mouse
4142318	Lyr2_m	lymphoma resistance 2 (mouse)			Not determined			14010457	63283678	Mouse
1301697	Sluc18_m	susceptibility to lung cancer 18 (mouse)			Not determined		4	22373448	56373612	Mouse
1357453	Kidq4_m	kidney weight QTL 4 (mouse)			Not determined		4	17892616	88982216	Mouse
4142047	Mvwf3_m	modifier of von Willebrand factor 3 (mouse)			Not determined			14010457	117072206	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
1357877	Synch1_m	synechia 1 (mouse)			Not determined		4	28709925	62710107	Mouse
1300977	Mopkd1_m	modifier of polycystic kidney disease progression 1 (mouse)			Not determined		4	36550839	70550967	Mouse
25440481	Moaq1_m	modifier of alien QTL 1 (mouse)					4	19500000	46000000	Mouse
1301237	Alcp7_m	alcohol preference locus 7 (mouse)			Not determined		4	17395160	51395290	Mouse
4141911	W6q15_m	weight 6 weeks QTL 15 (mouse)			Not determined			17892616	88982216	Mouse
1302075	Bdln6_m	body length 6 (mouse)			Not determined		4	22373448	56373612	Mouse
1302010	Wta1_m	weight adult 1 (mouse)			Not determined		4	8683240	42683429	Mouse
4142290	Ssrq9_m	stress response QTL 9 (mouse)			Not determined			34395160	46332776	Mouse
1301437	Scon1_m	sucrose consumption 1 (mouse)			Not determined		4	22373448	56373612	Mouse
10401905	Sicd3_m	seizure-induced cell death 3 (mouse)			Not determined		4	9395525	43760862	Mouse
1301473	Triglq1_m	triglyceride QTL 1 (mouse)			Not determined		4	8683240	42683429	Mouse
1300769	Pcyts2_m	plasmacytoma susceptibility 2 (mouse)			Not determined		4	22111944	56112145	Mouse
1301792	Hdlq10_m	HDL QTL 10 (mouse)			Not determined		4	35859707	69859853	Mouse
1301990	Arvm1_m	autoimmune renal vasculitis 1 (mouse)			Not determined		4	29332646	63332776	Mouse
1302116	Bbaa1_m	B.burgdorferi-associated arthritis 1 (mouse)			Not determined		4	38250930	72251078	Mouse
1302058	Hrtfm3_m	heart failure modifier 3 (mouse)			Not determined		4	22111944	56112145	Mouse
1302184	Aaom1_m	autoimmune aoritis in MRL mice 1 (mouse)			Not determined		4	24322299	46332776	Mouse
26884449	Sklq2_m	skull length QTL 2, 5 week (mouse)					4	36700000	128993793	Mouse
1302125	Lxw1_m	lupus BXSB x NZW 1 (mouse)			Not determined		4	8683240	42683429	Mouse

Markers in Region

AI429145

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	39,451,505 - 39,451,637	UniSTS	GRCm38
MGSCv37	4	39,398,538 - 39,398,670	UniSTS	GRCm37
Celera	4	39,140,273 - 39,140,405	UniSTS
Cytogenetic Map	4	A5	UniSTS
Whitehead/MRC_RH	4	631.32	UniSTS

UniSTS:492047

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	39,450,444 - 39,451,590	UniSTS	GRCm38
MGSCv37	4	39,397,477 - 39,398,623	UniSTS	GRCm37
Celera	4	39,139,212 - 39,140,358	UniSTS
Cytogenetic Map	4	A5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001081095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK005799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL807385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC050973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC116915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC116917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000029955 ⟹ ENSMUSP00000029955

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	39,450,295 - 39,451,776 (+)	Ensembl
GRCm38.p6 Ensembl	4	39,450,295 - 39,451,776 (+)	Ensembl

RefSeq Acc Id:

NM_001081095 ⟹ NP_001074564

RefSeq Status:

PREDICTED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	39,450,293 - 39,451,780 (+)	NCBI
GRCm38	4	39,450,293 - 39,451,780 (+)	ENTREZGENE
MGSCv37	4	39,397,326 - 39,398,813 (+)	RGD
Celera	4	39,139,061 - 39,140,548 (+)	RGD
cM Map	4		ENTREZGENE

Sequence:

show sequence

CCCTCTCCCCTTCCTCCTCTCCTCTCCGCTCCCCCACTCCCCCCTCTTCCCTCCCTTTTCCTCC
CTCCCCACCCCTGTCTTTCTCTCTCTGATTCAGGGCAGAAACAGCGGTCTAAGACCTAAGAAAA
GAAGAGAAAAAAACCCACCCTGTCAGCCCCTTTCCTCTCTCCAGCAAACCCTCCTGAATCGAGT
GCACAGATCTAGGATGATGCATCTGTAAAATCAGCCCCAAGCAGGCAAGTGGGACAGTGTGGAG
ACACTTGTGAAAGGATTGAGGTAATGGCCGCAGAGGGCGATCCCCCAGTCCAATTCAAGCTTGT
CCTCGTGGGCGATGGTGGTACTGGGAAGACAGCGTTTGTGAAACGCCACTTGACTGGTGAATTT
GAAAAGAAGTATGTGGCCACTCTGGGCGTAGAGGTACATCCTCTGATGTTCCACACCAGCAGAG
GGCCCATCAAGTTTAACGTCTGGGACACTGCTGGCCAGGAAAAGTTTGGGGGCCTGCGAGACGG
CTATTACATCCAAGCCCAGGGTGCCATTATAATGTTCGATGTAACATCAAGAATTACTTACAAA
AATGTGCCCAACTGGCATAGGGATCTGGTACGGGTGTGTGAAAACATCCCCATTGTGCTGTGTG
GTAACAAAGTAGATGTTAAAGACAGAAAAGTGAAGGCGAAGTCTATTGTCTTCCACCGCAAGAA
GAACCTTCAGTATTACGACATTTCAGCCAAAAGCAACTACAACTTTGAGAAACCCTTCCTCTGG
CTCTCCAGAAGACTCACTGGAGACTCTAACTTGGAGTTCGTTGCCATGCCGGCTCTAGCCCCAC
CTGAGGTGGTCATGGACCCAGCCTTAGCAAAGAAATACGAGCATGACTTGGAAGTGGCACAGGC
CACTGCTCTCCCCGATGAGGATGATGACTTATGAGAAAGTGAGGCTTGGGTGGCATCACAAGCC
TAAGCGTACAGGCAACTGCGCTGTAATGTCACCTGTGTGTCCTGTGTGTCATCTTGCTACCTAA
CTACGCAGACTCAGACTCCGTGTCAGTGGTAGCCAAACAGAAGGCTTCGGGGTGAAGCCTTCGG
ACTGTGGCAGTTACAAACACACCTTCCATCTGGGATTTGCAGGTTTAGCTGTTTGTTTCTTCCC
TGAGGTTCAAAACTAAGGGTCCTGCAGTTACAACCTGTGTCCTGTGGCAAAATCTTGGCACTGT
AATTTCATCCCTTTTGCTTAAAATAAAGTAGCTTTTCAAACACCAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001074564	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI16916	(Get FASTA)	NCBI Sequence Viewer
	AAI16918	(Get FASTA)	NCBI Sequence Viewer
	EDL05447	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000029955
	ENSMUSP00000029955.5

RefSeq Acc Id:

NP_001074564 ⟸ NM_001081095

- UniProtKB:

Q14AA6 (UniProtKB/TrEMBL), Q3ULW0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAEGDPPVQFKLVLVGDGGTGKTAFVKRHLTGEFEKKYVATLGVEVHPLMFHTSRGPIKFNVW
DTAGQEKFGGLRDGYYIQAQGAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD
RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLSRRLTGDSNLEFVAMPALAPPEVVMDPA
LAKKYEHDLEVAQATALPDEDDDL

hide sequence

Ensembl Acc Id:

ENSMUSP00000029955 ⟸ ENSMUST00000029955

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q14AA6-F1-model_v2	AlphaFold	Q14AA6	1-216	view protein structure

Promoters

RGD ID:

6883046

Promoter ID:

EPDNEW_M4966

Type:

initiation region

Name:

1700009N14Rik_1

Description:

Mus musculus RIKEN cDNA 1700009N14 gene , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	39,450,311 - 39,450,371	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1922721	AgrOrtholog
Ensembl Genes	ENSMUSG00000028287	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000029955	ENTREZGENE
	ENSMUST00000029955.5	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Ran_GTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
KEGG Report	mmu:75471	UniProtKB/TrEMBL
MGD	MGI:1922721	ENTREZGENE
NCBI Gene	75471	ENTREZGENE
PANTHER	GTP-BINDING NUCLEAR PROTEIN RAN	UniProtKB/TrEMBL
	PTHR24071	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PhenoGen	1700009N14Rik	PhenoGen
PRINTS	GTPRANTC4	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	Q14AA6	ENTREZGENE, UniProtKB/TrEMBL
	Q3ULW0	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)