1700009N14Rik (RIKEN cDNA 1700009N14 gene) - Rat Genome Database

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Gene: 1700009N14Rik (RIKEN cDNA 1700009N14 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 1700009N14Rik
Name: RIKEN cDNA 1700009N14 gene
RGD ID: 1314673
MGI Page MGI
Description: Enables protein domain specific binding activity. Predicted to be involved in protein import into nucleus and ribosomal subunit export from nucleus. Predicted to be active in cytoplasm and nucleus. Is expressed in brain ventricular layer; orbito-sphenoid; submandibular gland primordium; and vibrissa. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human RAN (RAN, member RAS oncogene family).
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: AI429145; hypothetical protein LOC75471; novel Ras protein; RP23-143B14.1; uncharacterized protein LOC75471
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39439,450,293 - 39,451,780 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl439,450,295 - 39,451,776 (+)EnsemblGRCm39 Ensembl
GRCm38439,450,293 - 39,451,780 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl439,450,295 - 39,451,776 (+)EnsemblGRCm38mm10GRCm38
MGSCv37439,397,326 - 39,398,813 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36439,638,964 - 39,640,451 (+)NCBIMGSCv36mm8
Celera439,139,061 - 39,140,548 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700009N14RikMouseprotein import into nucleus involved_inIBAPANTHER:PTN000632582 more ...2290270 GO_CentralGO_REF:0000033
1700009N14RikMouseribosomal subunit export from nucleus involved_inIBAPANTHER:PTN000632582 and UniProtKB:P628262290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700009N14RikMousecytoplasm is_active_inIBAPANTHER:PTN000632582 more ...2290270 GO_CentralGO_REF:0000033
1700009N14RikMousenucleus is_active_inIBAPANTHER:PTN000632582 more ...2290270 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700009N14RikMouseGTPase activity enablesIBAPANTHER:PTN000632582 more ...2290270 GO_CentralGO_REF:0000033
1700009N14RikMouseprotein domain specific binding enablesIPIPR:Q0KK552290270 PMID:17984326MGIPMID:17984326

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700009N14RikMouseribosome biogenesis pathway   IEA 6907045 KEGGmmu:03008

#
Reference Title
Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17984326   PMID:21267068   PMID:21873635   PMID:30713523  



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Variants in 1700009N14Rik
85 total Variants

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:87
Interacting mature miRNAs:89
Transcripts:ENSMUST00000029955
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse

1 to 10 of 33 rows
AI429145  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38439,451,505 - 39,451,637UniSTSGRCm38
MGSCv37439,398,538 - 39,398,670UniSTSGRCm37
Celera439,140,273 - 39,140,405UniSTS
Cytogenetic Map4A5UniSTS
Whitehead/MRC_RH4631.32UniSTS
UniSTS:492047  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38439,450,444 - 39,451,590UniSTSGRCm38
MGSCv37439,397,477 - 39,398,623UniSTSGRCm37
Celera439,139,212 - 39,140,358UniSTS
Cytogenetic Map4A5UniSTS







Ensembl Acc Id: ENSMUST00000029955   ⟹   ENSMUSP00000029955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl439,450,295 - 39,451,776 (+)Ensembl
GRCm38.p6 Ensembl439,450,295 - 39,451,776 (+)Ensembl
RefSeq Acc Id: NM_001081095   ⟹   NP_001074564
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39439,450,293 - 39,451,780 (+)NCBI
GRCm38439,450,293 - 39,451,780 (+)ENTREZGENE
MGSCv37439,397,326 - 39,398,813 (+)RGD
Celera439,139,061 - 39,140,548 (+)RGD
cM Map4 ENTREZGENE
Sequence:
Protein RefSeqs NP_001074564 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI16916 (Get FASTA)   NCBI Sequence Viewer  
  AAI16918 (Get FASTA)   NCBI Sequence Viewer  
  EDL05447 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000029955
  ENSMUSP00000029955.5
RefSeq Acc Id: NP_001074564   ⟸   NM_001081095
- UniProtKB: Q14AA6 (UniProtKB/TrEMBL),   Q3ULW0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000029955   ⟸   ENSMUST00000029955

Name Modeler Protein Id AA Range Protein Structure
AF-Q14AA6-F1-model_v2 AlphaFold Q14AA6 1-216 view protein structure

RGD ID:6883046
Promoter ID:EPDNEW_M4966
Type:initiation region
Name:1700009N14Rik_1
Description:Mus musculus RIKEN cDNA 1700009N14 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38439,450,311 - 39,450,371EPDNEW


1 to 26 of 26 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000028287 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029955 ENTREZGENE
  ENSMUST00000029955.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Ran_GTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report mmu:75471 UniProtKB/TrEMBL
MGD MGI:1922721 ENTREZGENE
NCBI Gene 75471 ENTREZGENE
PANTHER GTP-BINDING NUCLEAR PROTEIN RAN UniProtKB/TrEMBL
  PTHR24071 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen 1700009N14Rik PhenoGen
PRINTS GTPRANTC4 UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt Q14AA6 ENTREZGENE, UniProtKB/TrEMBL
  Q3ULW0 ENTREZGENE
1 to 26 of 26 rows