Astn2 (astrotactin 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Astn2 (astrotactin 2) Mus musculus
Analyze
Symbol: Astn2
Name: astrotactin 2
RGD ID: 1314131
MGI Page MGI
Description: Predicted to enable calcium ion binding activity and inositol 1,3,4,5 tetrakisphosphate binding activity. Acts upstream of or within establishment of body hair planar orientation and negative regulation of protein localization to cell surface. Located in cell pole; endosome; and membrane. Is expressed in several structures, including central nervous system; embryo mesenchyme; respiratory system; sensory organ; and skin. Orthologous to human ASTN2 (astrotactin 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1d8; A; Astnl; astrotactin-2; astrotactin-like; bM243L4.1 (astrotactin 2); bM264P11.1 (astrotactin 2); bM383P24.1 (astrotactin 2); bM423P8.1 (astrotactin 2); bM452J22.1; bM452J22.1 (novel protein); bM468K2.1 (astrotactin 2)
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39465,299,040 - 66,322,774 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl465,299,040 - 66,322,848 (-)EnsemblGRCm39 Ensembl
GRCm38465,380,803 - 66,404,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl465,380,803 - 66,404,611 (-)EnsemblGRCm38mm10GRCm38
MGSCv37465,041,837 - 66,065,517 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36464,867,164 - 65,890,844 (-)NCBIMGSCv36mm8
Celera464,014,026 - 65,026,874 (-)NCBICelera
Cytogenetic Map4C1NCBI
cM Map434.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell cortex  (IEA)
cell pole  (IDA)
clathrin-coated vesicle  (IEA)
early endosome  (IEA)
endosome  (IBA,IDA,ISO)
late endosome  (IEA)
membrane  (IBA,IDA)
perikaryon  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9989976   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:15368895   PMID:16141072   PMID:16141073   PMID:16602821   PMID:20005822   PMID:20573900  
PMID:21267068   PMID:21491433   PMID:21677750   PMID:21873635   PMID:24952961   PMID:26418459   PMID:27452274   PMID:28100779   PMID:28558017   PMID:30696770   PMID:32170006   PMID:36476860  
PMID:36807153   PMID:37298722   PMID:38187761  


Genomics

Comparative Map Data
Astn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39465,299,040 - 66,322,774 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl465,299,040 - 66,322,848 (-)EnsemblGRCm39 Ensembl
GRCm38465,380,803 - 66,404,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl465,380,803 - 66,404,611 (-)EnsemblGRCm38mm10GRCm38
MGSCv37465,041,837 - 66,065,517 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36464,867,164 - 65,890,844 (-)NCBIMGSCv36mm8
Celera464,014,026 - 65,026,874 (-)NCBICelera
Cytogenetic Map4C1NCBI
cM Map434.31NCBI
ASTN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389116,423,112 - 117,415,057 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9116,423,112 - 117,415,070 (-)EnsemblGRCh38hg38GRCh38
GRCh379119,185,391 - 120,177,335 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369118,227,328 - 119,217,138 (-)NCBINCBI36Build 36hg18NCBI36
Celera989,835,176 - 90,825,037 (-)NCBICelera
Cytogenetic Map9q33.1NCBI
HuRef988,793,045 - 89,344,120 (-)NCBIHuRef
HuRef989,381,724 - 89,795,414 (-)NCBIHuRef
CHM1_19119,333,901 - 120,324,897 (-)NCBICHM1_1
T2T-CHM13v2.09128,616,101 - 129,608,884 (-)NCBIT2T-CHM13v2.0
Astn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8583,772,988 - 84,759,439 (-)NCBIGRCr8
mRatBN7.2578,758,142 - 79,744,021 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl578,758,142 - 79,748,273 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx581,149,458 - 82,124,079 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0582,966,735 - 83,941,362 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0582,942,167 - 83,916,952 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0581,179,614 - 82,168,528 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl581,179,605 - 82,168,427 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0585,276,544 - 86,266,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4582,124,461 - 83,128,927 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1582,318,349 - 82,365,151 (-)NCBI
Celera577,680,743 - 78,656,297 (-)NCBICelera
Cytogenetic Map5q24NCBI
Astn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541910,486,118 - 11,390,085 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541910,486,200 - 11,387,553 (+)NCBIChiLan1.0ChiLan1.0
ASTN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21121,939,533 - 22,919,646 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1921,941,888 - 22,922,007 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0987,558,337 - 88,538,570 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19115,849,915 - 116,890,925 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9115,912,657 - 116,890,931 (-)Ensemblpanpan1.1panPan2
ASTN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11170,248,704 - 70,977,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1170,249,060 - 71,097,833 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1168,657,415 - 69,512,472 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01171,373,908 - 72,226,706 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1171,374,496 - 72,226,914 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11169,893,958 - 70,750,556 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01169,930,438 - 70,778,597 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01170,658,551 - 71,510,662 (-)NCBIUU_Cfam_GSD_1.0
Astn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947185,640,886 - 186,479,428 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364875,409,287 - 5,916,553 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364875,409,413 - 5,854,418 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASTN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1256,825,486 - 257,740,977 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11256,825,466 - 257,740,676 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21288,324,328 - 288,860,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASTN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11222,176,073 - 23,155,638 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1222,177,637 - 23,156,979 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603519,723,218 - 20,710,501 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Astn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476017,901,406 - 18,816,820 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476017,901,406 - 18,813,087 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:443
Count of miRNA genes:153
Interacting mature miRNAs:185
Transcripts:ENSMUST00000068214, ENSMUST00000084496
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25394562Skmw54_mskeletal muscle weight 54, EDL (mouse)46516435766455211Mouse
25394561Skmw53_mskeletal muscle weight 53, TA (mouse)46213829369838031Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
1357443Lhyp_mlung hyperpermeability (mouse)Not determined46045401166764818Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
12738417Lfibq13_mliver fibrosis QTL 13 (mouse)46360382665304775Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse

Markers in Region
33.MHAa95c9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38465,717,239 - 65,717,435UniSTSGRCm38
MGSCv37465,378,273 - 65,378,469UniSTSGRCm37
Celera464,348,583 - 64,348,779UniSTS
Cytogenetic Map4C1UniSTS
Whitehead_YAC4 UniSTS
41.MMHAP17FRF11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38465,713,937 - 65,714,127UniSTSGRCm38
MGSCv37465,374,971 - 65,375,161UniSTSGRCm37
Celera464,345,279 - 64,345,469UniSTS
Cytogenetic Map4C1UniSTS
Whitehead_YAC4 UniSTS
UniSTS:234940  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38465,615,114 - 65,615,271UniSTSGRCm38
MGSCv37465,276,148 - 65,276,305UniSTSGRCm37
Celera464,248,261 - 64,248,418UniSTS
Cytogenetic Map4C1UniSTS
cM Map433.0UniSTS
D4Mit25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38465,548,396 - 65,548,603UniSTSGRCm38
MGSCv37465,209,430 - 65,209,637UniSTSGRCm37
Celera464,181,806 - 64,182,013UniSTS
Cytogenetic Map4C1UniSTS
cM Map432.6UniSTS
Whitehead Genetic430.6UniSTS
Whitehead_YAC4 UniSTS
CA25.15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38465,558,212 - 65,558,440UniSTSGRCm38
MGSCv37465,219,246 - 65,219,474UniSTSGRCm37
Celera464,191,618 - 64,191,846UniSTS
Cytogenetic Map4C1UniSTS
cM Map433.0UniSTS
EPS8L1_9838  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38465,639,225 - 65,640,113UniSTSGRCm38
MGSCv37465,300,259 - 65,301,147UniSTSGRCm37
Celera464,272,384 - 64,273,272UniSTS
Cytogenetic Map4C1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_207109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF116573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL837523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000068214   ⟹   ENSMUSP00000065786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl465,299,040 - 66,322,848 (-)Ensembl
GRCm38.p6 Ensembl465,380,803 - 66,404,611 (-)Ensembl
Ensembl Acc Id: ENSMUST00000084496   ⟹   ENSMUSP00000081540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl465,299,040 - 66,322,720 (-)Ensembl
GRCm38.p6 Ensembl465,380,803 - 66,404,483 (-)Ensembl
RefSeq Acc Id: NM_019514   ⟹   NP_062387
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39465,299,040 - 66,322,720 (-)NCBI
GRCm38465,380,803 - 66,404,483 (-)NCBI
MGSCv37465,041,837 - 66,065,517 (-)RGD
Celera464,014,026 - 65,026,874 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_207109   ⟹   NP_996992
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39465,299,040 - 66,322,720 (-)NCBI
GRCm38465,380,803 - 66,404,483 (-)NCBI
MGSCv37465,041,837 - 66,065,517 (-)RGD
Celera464,014,026 - 65,026,874 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538104   ⟹   XP_006538167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39465,299,040 - 66,322,765 (-)NCBI
GRCm38465,380,805 - 66,404,530 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538105   ⟹   XP_006538168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39465,555,859 - 66,322,767 (-)NCBI
GRCm38465,637,622 - 66,404,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253680   ⟹   XP_030109540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39465,299,040 - 66,322,774 (-)NCBI
GRCm38465,380,805 - 66,404,537 (-)NCBI
Sequence:
RefSeq Acc Id: NP_062387   ⟸   NM_019514
- Peptide Label: isoform a
- UniProtKB: Q80Z10 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_996992   ⟸   NM_207109
- Peptide Label: isoform b precursor
- UniProtKB: Q811Y1 (UniProtKB/Swiss-Prot),   Q811Y0 (UniProtKB/Swiss-Prot),   Q811X9 (UniProtKB/Swiss-Prot),   Q6A031 (UniProtKB/Swiss-Prot),   E9Q8T4 (UniProtKB/Swiss-Prot),   Q811Y2 (UniProtKB/Swiss-Prot),   Q80Z10 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538167   ⟸   XM_006538104
- Peptide Label: isoform X1
- UniProtKB: Q80Z10 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538168   ⟸   XM_006538105
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030109540   ⟸   XM_030253680
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000081540   ⟸   ENSMUST00000084496
Ensembl Acc Id: ENSMUSP00000065786   ⟸   ENSMUST00000068214
Protein Domains
EGF-like   Fibronectin type-III   MACPF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80Z10-F1-model_v2 AlphaFold Q80Z10 1-1352 view protein structure

Promoters
RGD ID:6883676
Promoter ID:EPDNEW_M5289
Type:initiation region
Name:Astn2_1
Description:Mus musculus astrotactin 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38466,404,465 - 66,404,525EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889277 AgrOrtholog
Ensembl Genes ENSMUSG00000028373 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000068214 ENTREZGENE
  ENSMUST00000068214.11 UniProtKB/Swiss-Prot
  ENSMUST00000084496 ENTREZGENE
  ENSMUST00000084496.3 UniProtKB/Swiss-Prot
Gene3D-CATH Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Annexin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASTN1_2_EGF_Fn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASTN_1_2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASTN_2_hairpin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Astrotactin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MACPF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56079 UniProtKB/Swiss-Prot
MGD MGI:1889277 ENTREZGENE
NCBI Gene 56079 ENTREZGENE
PANTHER ASTROTACTIN-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16592 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Annexin_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASTN1_2_EGF_Fn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASTN_1_2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASTN_2_hairpin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MACPF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Astn2 PhenoGen
SMART MACPF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ASTN2_MOUSE UniProtKB/Swiss-Prot
  E9Q8T4 ENTREZGENE
  Q6A031 ENTREZGENE
  Q80Z10 ENTREZGENE
  Q811X9 ENTREZGENE
  Q811Y0 ENTREZGENE
  Q811Y1 ENTREZGENE
  Q811Y2 ENTREZGENE
  Q9QY74_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9Q8T4 UniProtKB/Swiss-Prot
  Q6A031 UniProtKB/Swiss-Prot
  Q811X9 UniProtKB/Swiss-Prot
  Q811Y0 UniProtKB/Swiss-Prot
  Q811Y1 UniProtKB/Swiss-Prot
  Q811Y2 UniProtKB/Swiss-Prot