Gpbp1 (GC-rich promoter binding protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gpbp1 (GC-rich promoter binding protein 1) Mus musculus
Analyze
Symbol: Gpbp1
Name: GC-rich promoter binding protein 1
RGD ID: 1313550
MGI Page MGI
Description: Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Orthologous to human GPBP1 (GC-rich promoter binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700034P14Rik; AU019836; D230035M11Rik; GC-rich promoter-binding protein 1; Gpbp; mGPBP; vasculin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18662  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913111,562,214 - 111,626,658 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13111,562,214 - 111,626,645 (-)EnsemblGRCm39 Ensembl
GRCm3813111,425,680 - 111,490,128 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13111,425,680 - 111,490,111 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713112,215,888 - 112,280,249 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613112,546,560 - 112,610,717 (-)NCBIMGSCv36mm8
Celera13115,738,989 - 115,803,291 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:14612417   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:38355793  


Genomics

Comparative Map Data
Gpbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913111,562,214 - 111,626,658 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13111,562,214 - 111,626,645 (-)EnsemblGRCm39 Ensembl
GRCm3813111,425,680 - 111,490,128 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13111,425,680 - 111,490,111 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713112,215,888 - 112,280,249 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613112,546,560 - 112,610,717 (-)NCBIMGSCv36mm8
Celera13115,738,989 - 115,803,291 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.23NCBI
GPBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38557,174,059 - 57,264,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl557,173,948 - 57,264,679 (+)EnsemblGRCh38hg38GRCh38
GRCh37556,469,886 - 56,560,506 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36556,505,701 - 56,594,666 (+)NCBINCBI36Build 36hg18NCBI36
Celera553,424,015 - 53,515,385 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef553,441,632 - 53,533,047 (+)NCBIHuRef
CHM1_1556,472,980 - 56,563,579 (+)NCBICHM1_1
T2T-CHM13v2.0558,002,364 - 58,093,366 (+)NCBIT2T-CHM13v2.0
Gpbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8244,756,861 - 44,824,281 (-)NCBIGRCr8
mRatBN7.2243,023,504 - 43,091,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl243,023,504 - 43,090,907 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx250,138,349 - 50,204,256 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0248,196,813 - 48,262,719 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0243,048,332 - 43,114,247 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0243,002,041 - 43,070,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl243,002,044 - 43,068,677 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0262,047,275 - 62,115,979 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4242,751,497 - 42,800,922 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1242,671,862 - 42,702,633 (-)NCBI
Celera238,808,458 - 38,874,557 (-)NCBICelera
Cytogenetic Map2q14NCBI
Gpbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544610,682,143 - 10,741,377 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544610,685,476 - 10,741,375 (-)NCBIChiLan1.0ChiLan1.0
GPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2456,653,129 - 56,742,710 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1554,805,767 - 54,896,187 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0556,741,133 - 56,831,009 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1558,373,217 - 58,463,712 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl558,373,217 - 58,463,580 (-)Ensemblpanpan1.1panPan2
GPBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1244,243,833 - 44,316,498 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl244,246,288 - 44,316,032 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha241,305,115 - 41,377,938 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0244,725,539 - 44,798,552 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl244,725,818 - 44,801,357 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1241,801,788 - 41,874,299 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0242,606,077 - 42,678,615 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0243,425,746 - 43,498,621 (+)NCBIUU_Cfam_GSD_1.0
Gpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213201,782,394 - 201,849,810 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648010,719,487 - 10,786,310 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648010,718,992 - 10,786,347 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1636,217,261 - 36,297,818 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11636,217,235 - 36,298,007 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21638,490,108 - 38,570,136 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1453,408,272 - 53,495,861 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl453,444,677 - 53,498,155 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660492,312,243 - 2,400,256 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247591,992,747 - 2,060,590 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpbp1
2522 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:938
Count of miRNA genes:422
Interacting mature miRNAs:496
Transcripts:ENSMUST00000047627, ENSMUST00000091236, ENSMUST00000129638, ENSMUST00000136471, ENSMUST00000143331, ENSMUST00000156221
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142334Svtms_msurvival time modifier of Sod2 (mouse)Not determined13107613580119476372Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
13824989Pbsq1_mpercent broken sperm QTL 1 (mouse)13102136508112136534Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4141704Hipq1_mhyperinsulin production QTL 1 (mouse)Not determined110409487119476372Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
4141826Tbqt5_mtibia bone quality traits 5 (mouse)Not determined13103341617117043216Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse

Markers in Region
RH136296  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813111,425,868 - 111,426,059UniSTSGRCm38
MGSCv3713112,216,076 - 112,216,267UniSTSGRCm37
Celera13115,739,177 - 115,739,368UniSTS
Cytogenetic Map13D2.1UniSTS
RH124303  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13D2.1UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
A002V17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813111,440,658 - 111,440,763UniSTSGRCm38
MGSCv3713112,230,866 - 112,230,971UniSTSGRCm37
Celera13115,753,969 - 115,754,074UniSTS
Cytogenetic Map13D2.1UniSTS
WI-21467  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813111,426,202 - 111,426,453UniSTSGRCm38
MGSCv3713112,216,410 - 112,216,661UniSTSGRCm37
Celera13115,739,511 - 115,739,762UniSTS
Cytogenetic Map13D2.1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001122963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY382529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC076635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF582635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000047627   ⟹   ENSMUSP00000048240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13111,562,214 - 111,626,645 (-)Ensembl
GRCm38.p6 Ensembl13111,425,680 - 111,490,111 (-)Ensembl
Ensembl Acc Id: ENSMUST00000091236   ⟹   ENSMUSP00000088777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13111,562,466 - 111,626,562 (-)Ensembl
GRCm38.p6 Ensembl13111,425,932 - 111,490,028 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13111,577,276 - 111,589,957 (-)Ensembl
GRCm38.p6 Ensembl13111,440,742 - 111,453,423 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136471   ⟹   ENSMUSP00000123249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13111,562,692 - 111,624,246 (-)Ensembl
GRCm38.p6 Ensembl13111,426,158 - 111,487,712 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13111,577,206 - 111,589,916 (-)Ensembl
GRCm38.p6 Ensembl13111,440,672 - 111,453,382 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13111,574,605 - 111,589,957 (-)Ensembl
GRCm38.p6 Ensembl13111,438,071 - 111,453,423 (-)Ensembl
RefSeq Acc Id: NM_001122963   ⟹   NP_001116435
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,404 (-)NCBI
GRCm3813111,425,680 - 111,490,127 (-)NCBI
MGSCv3713112,215,888 - 112,280,249 (-)RGD
Celera13115,738,989 - 115,803,291 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001361923   ⟹   NP_001348852
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,404 (-)NCBI
GRCm3813111,425,680 - 111,490,127 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361924   ⟹   NP_001348853
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,404 (-)NCBI
GRCm3813111,425,680 - 111,490,127 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361925   ⟹   NP_001348854
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,404 (-)NCBI
GRCm3813111,425,680 - 111,490,127 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361926   ⟹   NP_001348855
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,404 (-)NCBI
GRCm3813111,425,680 - 111,490,127 (-)NCBI
Sequence:
RefSeq Acc Id: NM_028487   ⟹   NP_082763
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,404 (-)NCBI
GRCm3813111,425,680 - 111,490,127 (-)NCBI
MGSCv3713112,215,888 - 112,280,249 (-)RGD
Celera13115,738,989 - 115,803,291 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517772   ⟹   XP_006517835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,133 (-)NCBI
GRCm3813111,425,680 - 111,489,599 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247435   ⟹   XP_030103295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,144 (-)NCBI
GRCm3813111,425,680 - 111,489,544 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247436   ⟹   XP_030103296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,658 (-)NCBI
GRCm3813111,425,680 - 111,490,128 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158193   ⟹   XP_036014086
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,626,043 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158194   ⟹   XP_036014087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913111,562,214 - 111,584,095 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001116435 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348852 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348853 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348854 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348855 (Get FASTA)   NCBI Sequence Viewer  
  NP_082763 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517835 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103295 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103296 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014086 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014087 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH16083 (Get FASTA)   NCBI Sequence Viewer  
  AAH67075 (Get FASTA)   NCBI Sequence Viewer  
  AAH94888 (Get FASTA)   NCBI Sequence Viewer  
  AAQ88446 (Get FASTA)   NCBI Sequence Viewer  
  BAB24672 (Get FASTA)   NCBI Sequence Viewer  
  BAC38578 (Get FASTA)   NCBI Sequence Viewer  
  BAE22631 (Get FASTA)   NCBI Sequence Viewer  
  BAE26364 (Get FASTA)   NCBI Sequence Viewer  
  BAE36638 (Get FASTA)   NCBI Sequence Viewer  
  BAE37320 (Get FASTA)   NCBI Sequence Viewer  
  BAE37330 (Get FASTA)   NCBI Sequence Viewer  
  BAE41152 (Get FASTA)   NCBI Sequence Viewer  
  EDL18426 (Get FASTA)   NCBI Sequence Viewer  
  EDL18427 (Get FASTA)   NCBI Sequence Viewer  
  EDL18428 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000048240
  ENSMUSP00000048240.8
  ENSMUSP00000088777
  ENSMUSP00000088777.5
  ENSMUSP00000123249.2
GenBank Protein Q6NXH3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_082763   ⟸   NM_028487
- Peptide Label: isoform 2
- UniProtKB: Q6NXH3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116435   ⟸   NM_001122963
- Peptide Label: isoform 1
- UniProtKB: Q8C498 (UniProtKB/Swiss-Prot),   Q6TYE7 (UniProtKB/Swiss-Prot),   Q3TSN7 (UniProtKB/Swiss-Prot),   Q3TQR2 (UniProtKB/Swiss-Prot),   Q8R252 (UniProtKB/Swiss-Prot),   Q6NXH3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517835   ⟸   XM_006517772
- Peptide Label: isoform X1
- UniProtKB: Q6NXH3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030103296   ⟸   XM_030247436
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001348855   ⟸   NM_001361926
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001348854   ⟸   NM_001361925
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001348853   ⟸   NM_001361924
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001348852   ⟸   NM_001361923
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030103295   ⟸   XM_030247435
- Peptide Label: isoform X2
- UniProtKB: Q8C498 (UniProtKB/Swiss-Prot),   Q6TYE7 (UniProtKB/Swiss-Prot),   Q6NXH3 (UniProtKB/Swiss-Prot),   Q3TSN7 (UniProtKB/Swiss-Prot),   Q3TQR2 (UniProtKB/Swiss-Prot),   Q8R252 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000088777   ⟸   ENSMUST00000091236
Ensembl Acc Id: ENSMUSP00000048240   ⟸   ENSMUST00000047627
Ensembl Acc Id: ENSMUSP00000123249   ⟸   ENSMUST00000136471
RefSeq Acc Id: XP_036014086   ⟸   XM_036158193
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036014087   ⟸   XM_036158194
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6NXH3-F1-model_v2 AlphaFold Q6NXH3 1-473 view protein structure

Promoters
RGD ID:8681292
Promoter ID:EPDNEW_M18677
Type:initiation region
Name:Gpbp1_1
Description:Mus musculus GC-rich promoter binding protein 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18678  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813111,489,844 - 111,489,904EPDNEW
RGD ID:8681296
Promoter ID:EPDNEW_M18678
Type:initiation region
Name:Gpbp1_2
Description:Mus musculus GC-rich promoter binding protein 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18677  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813111,489,972 - 111,490,032EPDNEW
RGD ID:6824013
Promoter ID:MM_KWN:15247
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung
Transcripts:ENSMUST00000109274,   ENSMUST00000116379,   OTTMUST00000047254,   UC007RVV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613112,278,911 - 112,279,411 (-)MPROMDB
RGD ID:6823988
Promoter ID:MM_KWN:15248
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001122963,   OTTMUST00000047253
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613112,279,921 - 112,280,752 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920524 AgrOrtholog
Ensembl Genes ENSMUSG00000032745 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047627 ENTREZGENE
  ENSMUST00000047627.14 UniProtKB/Swiss-Prot
  ENSMUST00000091236 ENTREZGENE
  ENSMUST00000091236.11 UniProtKB/Swiss-Prot
  ENSMUST00000136471.9 UniProtKB/TrEMBL
InterPro Vasculin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:73274 UniProtKB/Swiss-Prot
MGD MGI:1920524 ENTREZGENE
NCBI Gene 73274 ENTREZGENE
PANTHER PTHR14339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VASCULIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Vasculin UniProtKB/Swiss-Prot
PhenoGen Gpbp1 PhenoGen
UniProt D6RCY3_MOUSE UniProtKB/TrEMBL
  GPBP1_MOUSE UniProtKB/Swiss-Prot
  Q3TQR2 ENTREZGENE
  Q3TSN7 ENTREZGENE
  Q6NXH3 ENTREZGENE
  Q6TYE7 ENTREZGENE
  Q8C498 ENTREZGENE
  Q8R252 ENTREZGENE
  Q9CVT5_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3TQR2 UniProtKB/Swiss-Prot
  Q3TSN7 UniProtKB/Swiss-Prot
  Q6TYE7 UniProtKB/Swiss-Prot
  Q8C498 UniProtKB/Swiss-Prot
  Q8R252 UniProtKB/Swiss-Prot