Cherp (calcium homeostasis endoplasmic reticulum protein) - Rat Genome Database

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Gene: Cherp (calcium homeostasis endoplasmic reticulum protein) Mus musculus
Analyze
Symbol: Cherp
Name: calcium homeostasis endoplasmic reticulum protein
RGD ID: 1313215
MGI Page MGI
Description: Predicted to enable transmembrane transporter binding activity. Predicted to be involved in intracellular calcium ion homeostasis; positive regulation of calcineurin-NFAT signaling cascade; and release of sequestered calcium ion into cytosol. Predicted to act upstream of or within negative regulation of cell population proliferation. Predicted to be located in sarcoplasmic reticulum membrane. Predicted to be active in perinuclear region of cytoplasm. Is expressed in embryo and extraembryonic component. Orthologous to human CHERP (calcium homeostasis endoplasmic reticulum protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730408I11Rik; D8Wsu96; D8Wsu96e; DAN; DAN16; SCA; Scaf6; SR-related CTD associated factor 6; SR-related CTD-associated factor 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,214,327 - 73,229,077 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl873,214,333 - 73,229,070 (-)EnsemblGRCm39 Ensembl
GRCm38872,460,483 - 72,475,233 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,460,489 - 72,475,226 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,984,382 - 74,999,132 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,389,472 - 75,404,124 (-)NCBIMGSCv36mm8
Celera876,803,131 - 76,819,801 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map835.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10729222   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:15741177   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:20368287   PMID:21267068   PMID:21677750   PMID:21873635   PMID:26420826   PMID:28162770   PMID:30550785  


Genomics

Comparative Map Data
Cherp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,214,327 - 73,229,077 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl873,214,333 - 73,229,070 (-)EnsemblGRCm39 Ensembl
GRCm38872,460,483 - 72,475,233 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,460,489 - 72,475,226 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,984,382 - 74,999,132 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,389,472 - 75,404,124 (-)NCBIMGSCv36mm8
Celera876,803,131 - 76,819,801 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map835.08NCBI
CHERP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,517,894 - 16,542,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,517,894 - 16,542,437 (-)EnsemblGRCh38hg38GRCh38
GRCh371916,628,705 - 16,653,248 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,489,700 - 16,514,263 (-)NCBINCBI36Build 36hg18NCBI36
Build 341916,489,705 - 16,514,248NCBI
Celera1916,530,540 - 16,555,103 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,197,286 - 16,221,850 (-)NCBIHuRef
CHM1_11916,628,185 - 16,652,748 (-)NCBICHM1_1
T2T-CHM13v2.01916,652,683 - 16,677,227 (-)NCBIT2T-CHM13v2.0
Cherp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,401,497 - 17,414,549 (+)NCBIGRCr8
mRatBN7.21617,367,455 - 17,380,507 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,367,455 - 17,380,507 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,435,991 - 17,449,041 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,567,132 - 18,580,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,488,911 - 17,501,961 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,068,783 - 19,081,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,068,783 - 19,081,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,931,534 - 18,944,588 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,785,631 - 17,798,683 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11617,785,627 - 17,798,334 (+)NCBI
Celera1617,587,224 - 17,600,285 (+)NCBICelera
Cytogenetic Map16p14NCBI
Cherp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,224,897 - 1,234,758 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,224,698 - 1,235,192 (+)NCBIChiLan1.0ChiLan1.0
CHERP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,390,649 - 21,417,240 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,396,716 - 20,426,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,008,527 - 16,032,755 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,988,199 - 17,011,888 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,988,200 - 17,011,888 (-)Ensemblpanpan1.1panPan2
CHERP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,002,532 - 46,020,445 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,002,617 - 46,019,588 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,915,922 - 45,934,528 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,489,430 - 46,508,037 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,489,507 - 46,508,032 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,724,623 - 45,743,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,135,365 - 46,153,990 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,410,698 - 46,429,302 (+)NCBIUU_Cfam_GSD_1.0
Cherp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,534,844 - 204,554,175 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,083,920 - 4,103,990 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,084,091 - 4,102,096 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHERP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,063,004 - 61,083,424 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,062,960 - 61,083,427 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,649,516 - 60,665,997 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHERP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,027,733 - 15,051,725 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,028,902 - 15,051,633 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660744,419,591 - 4,443,670 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cherp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908926,067 - 936,762 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908926,055 - 937,221 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cherp
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:378
Count of miRNA genes:291
Interacting mature miRNAs:322
Transcripts:ENSMUST00000079510
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84474791478748059Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
11039503Ccc4_mcolitis susceptibility in the Collaborative Cross 4 (mouse)86517423778002730Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse

Markers in Region
RH124924  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38872,460,574 - 72,460,771UniSTSGRCm38
MGSCv37874,984,473 - 74,984,670UniSTSGRCm37
Celera876,803,222 - 76,803,419UniSTS
Cytogenetic Map8B3.3UniSTS
D8Wsu96e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38872,460,530 - 72,460,779UniSTSGRCm38
MGSCv37874,984,429 - 74,984,678UniSTSGRCm37
Celera876,803,178 - 76,803,427UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map834.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF536541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY061354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000079510   ⟹   ENSMUSP00000078469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl873,214,333 - 73,228,963 (-)Ensembl
GRCm38.p6 Ensembl872,460,489 - 72,475,119 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl873,223,708 - 73,228,957 (-)Ensembl
GRCm38.p6 Ensembl872,469,864 - 72,475,113 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl873,224,765 - 73,228,979 (-)Ensembl
GRCm38.p6 Ensembl872,470,921 - 72,475,135 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl873,221,735 - 73,222,175 (-)Ensembl
GRCm38.p6 Ensembl872,467,891 - 72,468,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212586
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl873,227,822 - 73,229,005 (-)Ensembl
GRCm38.p6 Ensembl872,473,978 - 72,475,161 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212870
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl873,224,774 - 73,228,680 (-)Ensembl
GRCm38.p6 Ensembl872,470,930 - 72,474,836 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212991   ⟹   ENSMUSP00000148273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl873,214,474 - 73,229,070 (-)Ensembl
GRCm38.p6 Ensembl872,460,630 - 72,475,226 (-)Ensembl
RefSeq Acc Id: NM_001359024   ⟹   NP_001345953
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39873,214,327 - 73,229,077 (-)NCBI
GRCm38872,460,483 - 72,475,233 (-)NCBI
Sequence:
RefSeq Acc Id: NM_138585   ⟹   NP_613051
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39873,214,327 - 73,229,077 (-)NCBI
GRCm38872,460,483 - 72,475,233 (-)NCBI
MGSCv37874,984,382 - 74,999,132 (-)RGD
Celera876,803,131 - 76,819,801 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_613051   ⟸   NM_138585
- Peptide Label: isoform 1
- UniProtKB: Q8VCD2 (UniProtKB/Swiss-Prot),   Q8K291 (UniProtKB/Swiss-Prot),   Q8CGZ0 (UniProtKB/Swiss-Prot),   A0A1D5RL92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345953   ⟸   NM_001359024
- Peptide Label: isoform 2
- UniProtKB: Q8VCD2 (UniProtKB/Swiss-Prot),   Q8K291 (UniProtKB/Swiss-Prot),   Q8CGZ0 (UniProtKB/Swiss-Prot),   G5E8I8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000078469   ⟸   ENSMUST00000079510
RefSeq Acc Id: ENSMUSP00000148273   ⟸   ENSMUST00000212991
Protein Domains
CID   G-patch   SURP motif

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CGZ0-F1-model_v2 AlphaFold Q8CGZ0 1-936 view protein structure

Promoters
RGD ID:8667475
Promoter ID:EPDNEW_M11769
Type:initiation region
Name:Cherp_1
Description:Mus musculus calcium homeostasis endoplasmic reticulum protein, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38872,475,135 - 72,475,195EPDNEW
RGD ID:6848270
Promoter ID:MM_ACW:47967
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Lung
Transcripts:CHERP.GSEP07,   CHERP.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,985,721 - 74,986,221 (-)MPROMDB
RGD ID:6842932
Promoter ID:MM_KWN:54873
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_138585,   UC009MGB.1,   UC009MGC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,998,899 - 74,999,399 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106417 AgrOrtholog
Ensembl Genes ENSMUSG00000052488 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000079510 ENTREZGENE
  ENSMUST00000079510.6 UniProtKB/TrEMBL
  ENSMUST00000212991 ENTREZGENE
  ENSMUST00000212991.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CHERP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CID_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_patch_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Surp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWAP/Surp_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:27967 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:106417 ENTREZGENE
NCBI Gene 27967 ENTREZGENE
PANTHER CALCIUM HOMEOSTASIS ENDOPLASMIC RETICULUM PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12323 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CTD_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G-patch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Surp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cherp PhenoGen
PROSITE CID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PATCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SURP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART G_patch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109905 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48464 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RL92 ENTREZGENE, UniProtKB/TrEMBL
  CHERP_MOUSE UniProtKB/Swiss-Prot
  G5E8I8 ENTREZGENE, UniProtKB/TrEMBL
  Q8CGZ0 ENTREZGENE
  Q8K291 ENTREZGENE
  Q8VCD2 ENTREZGENE
  Q9CYM4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8K291 UniProtKB/Swiss-Prot
  Q8VCD2 UniProtKB/Swiss-Prot