Letm2 (leucine zipper and EF-hand containing transmembrane protein 2) - Rat Genome Database

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Gene: Letm2 (leucine zipper and EF-hand containing transmembrane protein 2) Rattus norvegicus
Analyze
Symbol: Letm2
Name: leucine zipper and EF-hand containing transmembrane protein 2
RGD ID: 1311220
Description: Predicted to enable transmembrane transporter activity. Predicted to be involved in mitochondrial calcium ion transmembrane transport and mitochondrion organization. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human LETM2 (leucine zipper and EF-hand containing transmembrane protein 2); INTERACTS WITH 2-methoxyethanol; 3,3',4,4',5-pentachlorobiphenyl; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LETM1 and EF-hand domain-containing protein 2; LETM1 domain-containing protein LETM2, mitochondrial; LETM2S; leucine zipper-, EF-hand motif- containing transmembrane protein 2; leucine zipper-, EF-hand motif- containing transmembrane protein 2S; leucine zipper-EF-hand containing transmembrane protein 2; leucine zipper-EF-hand-containing transmembrane protein 1-like; LOC361169
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81673,171,768 - 73,192,336 (+)NCBIGRCr8
mRatBN7.21666,464,958 - 66,489,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,469,111 - 66,489,704 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1671,747,982 - 71,768,677 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01675,153,915 - 75,174,614 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,394,639 - 70,415,331 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01671,241,335 - 71,261,841 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1671,241,335 - 71,261,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01670,900,977 - 70,921,167 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,844,079 - 70,865,537 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11670,844,343 - 70,865,801 (+)NCBI
Celera1664,377,723 - 64,398,194 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18628306   PMID:34800366  


Genomics

Comparative Map Data
Letm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81673,171,768 - 73,192,336 (+)NCBIGRCr8
mRatBN7.21666,464,958 - 66,489,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,469,111 - 66,489,704 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1671,747,982 - 71,768,677 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01675,153,915 - 75,174,614 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,394,639 - 70,415,331 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01671,241,335 - 71,261,841 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1671,241,335 - 71,261,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01670,900,977 - 70,921,167 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,844,079 - 70,865,537 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11670,844,343 - 70,865,801 (+)NCBI
Celera1664,377,723 - 64,398,194 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
LETM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38838,382,431 - 38,409,527 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl838,386,207 - 38,409,527 (+)EnsemblGRCh38hg38GRCh38
GRCh37838,243,994 - 38,267,045 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36838,363,177 - 38,385,218 (+)NCBINCBI36Build 36hg18NCBI36
Build 34838,363,176 - 38,385,218NCBI
Celera837,197,089 - 37,219,038 (+)NCBICelera
Cytogenetic Map8p11.23NCBI
HuRef836,778,172 - 36,800,051 (+)NCBIHuRef
CHM1_1838,445,848 - 38,467,966 (+)NCBICHM1_1
T2T-CHM13v2.0838,659,474 - 38,686,498 (+)NCBIT2T-CHM13v2.0
Letm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39826,068,494 - 26,088,005 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl826,068,506 - 26,087,598 (-)EnsemblGRCm39 Ensembl
GRCm38825,578,478 - 25,597,989 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl825,578,490 - 25,597,582 (-)EnsemblGRCm38mm10GRCm38
MGSCv37826,688,962 - 26,707,959 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36827,057,205 - 27,063,041 (-)NCBIMGSCv36mm8
Celera827,046,850 - 27,065,845 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map814.17NCBI
Letm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546313,991,890 - 14,010,475 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546313,990,353 - 14,012,911 (+)NCBIChiLan1.0ChiLan1.0
LETM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2756,948,678 - 56,972,348 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1832,665,591 - 32,689,026 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0837,687,640 - 37,711,531 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1834,864,491 - 34,889,215 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl834,864,516 - 34,888,534 (+)Ensemblpanpan1.1panPan2
LETM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11627,082,167 - 27,102,172 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1627,078,902 - 27,100,591 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1627,600,542 - 27,619,491 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01628,981,489 - 29,000,664 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1628,977,178 - 29,000,730 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11627,204,920 - 27,223,274 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01627,782,005 - 27,800,922 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01627,820,960 - 27,839,900 (-)NCBIUU_Cfam_GSD_1.0
Letm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494349,702,728 - 49,724,283 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367101,736,721 - 1,758,693 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367101,736,010 - 1,758,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LETM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1548,110,652 - 48,131,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11548,110,645 - 48,132,429 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21555,272,957 - 55,294,480 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LETM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1836,399,207 - 36,423,548 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl836,401,927 - 36,422,835 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660525,564,170 - 5,590,167 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Letm2
157 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:41
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000030489, ENSRNOT00000066144
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat

Markers in Region
AW533592  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21666,489,401 - 66,489,551 (+)MAPPERmRatBN7.2
Rnor_6.01671,261,608 - 71,261,757NCBIRnor6.0
Rnor_5.01670,920,934 - 70,921,083UniSTSRnor5.0
RGSC_v3.41670,865,304 - 70,865,453UniSTSRGSC3.4
Celera1664,397,961 - 64,398,110UniSTS
RH 3.4 Map16621.4UniSTS
Cytogenetic Map16q12.4UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB296367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB296368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000030489   ⟹   ENSRNOP00000032494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,469,111 - 66,489,634 (+)Ensembl
Rnor_6.0 Ensembl1671,242,470 - 71,261,591 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000066144   ⟹   ENSRNOP00000062009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,469,111 - 66,489,704 (+)Ensembl
Rnor_6.0 Ensembl1671,241,335 - 71,261,840 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100606   ⟹   ENSRNOP00000088759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,469,111 - 66,480,622 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105535   ⟹   ENSRNOP00000095230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,469,656 - 66,474,007 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106112   ⟹   ENSRNOP00000081598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,469,190 - 66,475,275 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109594   ⟹   ENSRNOP00000083182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,469,111 - 66,489,671 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118537   ⟹   ENSRNOP00000081903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,472,592 - 66,489,634 (+)Ensembl
RefSeq Acc Id: NM_001012158   ⟹   NP_001012158
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,817 - 73,192,336 (+)NCBI
mRatBN7.21666,469,111 - 66,489,635 (+)NCBI
Rnor_6.01671,241,335 - 71,261,841 (+)NCBI
Rnor_5.01670,900,977 - 70,921,167 (+)NCBI
RGSC_v3.41670,844,079 - 70,865,537 (+)RGD
Celera1664,377,723 - 64,398,194 (+)RGD
Sequence:
RefSeq Acc Id: XM_039094661   ⟹   XP_038950589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,870 - 73,192,336 (+)NCBI
mRatBN7.21666,468,462 - 66,489,640 (+)NCBI
RefSeq Acc Id: XM_039094662   ⟹   XP_038950590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,190,828 (+)NCBI
mRatBN7.21666,468,462 - 66,488,526 (+)NCBI
RefSeq Acc Id: XM_039094664   ⟹   XP_038950592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
mRatBN7.21666,468,470 - 66,489,640 (+)NCBI
RefSeq Acc Id: XM_039094665   ⟹   XP_038950593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
mRatBN7.21666,468,480 - 66,489,640 (+)NCBI
RefSeq Acc Id: XM_063275520   ⟹   XP_063131590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,815 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275522   ⟹   XP_063131592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275523   ⟹   XP_063131593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,847 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275524   ⟹   XP_063131594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275525   ⟹   XP_063131595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,769 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275526   ⟹   XP_063131596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,830 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275527   ⟹   XP_063131597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275528   ⟹   XP_063131598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,853 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275529   ⟹   XP_063131599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,815 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275531   ⟹   XP_063131601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,769 - 73,190,828 (+)NCBI
RefSeq Acc Id: XM_063275532   ⟹   XP_063131602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,830 - 73,190,828 (+)NCBI
RefSeq Acc Id: XM_063275533   ⟹   XP_063131603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,815 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275534   ⟹   XP_063131604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275535   ⟹   XP_063131605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,791 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275536   ⟹   XP_063131606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,772 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275537   ⟹   XP_063131607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,830 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275538   ⟹   XP_063131608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,808 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275539   ⟹   XP_063131609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275542   ⟹   XP_063131612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,770 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275543   ⟹   XP_063131613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,827 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275544   ⟹   XP_063131614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,778 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275545   ⟹   XP_063131615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275546   ⟹   XP_063131616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,812 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275547   ⟹   XP_063131617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,794 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275548   ⟹   XP_063131618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,772 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275549   ⟹   XP_063131619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,826 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275550   ⟹   XP_063131620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275552   ⟹   XP_063131622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,815 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275553   ⟹   XP_063131623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275554   ⟹   XP_063131624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,794 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275555   ⟹   XP_063131625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275556   ⟹   XP_063131626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,847 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275557   ⟹   XP_063131627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275558   ⟹   XP_063131628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,830 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275559   ⟹   XP_063131629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,768 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275560   ⟹   XP_063131630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,768 - 73,190,828 (+)NCBI
RefSeq Acc Id: XM_063275561   ⟹   XP_063131631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275563   ⟹   XP_063131633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,769 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275564   ⟹   XP_063131634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,830 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275565   ⟹   XP_063131635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275566   ⟹   XP_063131636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,847 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275567   ⟹   XP_063131637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,771 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275568   ⟹   XP_063131638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,830 - 73,192,336 (+)NCBI
RefSeq Acc Id: XM_063275569   ⟹   XP_063131639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,876 - 73,178,754 (+)NCBI
RefSeq Acc Id: XM_063275570   ⟹   XP_063131640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81673,171,768 - 73,178,754 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001012158 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421346 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421347 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421348 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421349 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421350 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421351 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421352 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421353 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421354 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421355 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950593 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131590 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131592 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131593 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131594 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131595 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131596 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131597 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131598 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131599 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131601 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131602 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131603 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131604 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131605 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131606 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131608 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131612 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131614 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131616 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131618 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131619 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131620 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131622 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131623 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131624 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131625 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131626 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131627 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131628 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131629 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131630 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131631 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131633 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131634 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131635 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131636 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131637 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131638 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131639 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131640 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH87079 (Get FASTA)   NCBI Sequence Viewer  
  BAF79864 (Get FASTA)   NCBI Sequence Viewer  
  BAF79865 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000032494
  ENSRNOP00000032494.7
  ENSRNOP00000062009.4
  ENSRNOP00000081598.1
  ENSRNOP00000081903.1
  ENSRNOP00000083182.1
  ENSRNOP00000088759.1
  ENSRNOP00000095230.1
GenBank Protein Q5PQQ5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001012158   ⟸   NM_001012158
- Peptide Label: precursor
- UniProtKB: A7VL16 (UniProtKB/Swiss-Prot),   Q5PQQ5 (UniProtKB/Swiss-Prot),   A0A8I5ZTW7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062009   ⟸   ENSRNOT00000066144
Ensembl Acc Id: ENSRNOP00000032494   ⟸   ENSRNOT00000030489
RefSeq Acc Id: XP_038950589   ⟸   XM_039094661
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL),   A6IW13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950590   ⟸   XM_039094662
- Peptide Label: isoform X2
- UniProtKB: A6IW13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950592   ⟸   XM_039094664
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL),   A6IW13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950593   ⟸   XM_039094665
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot),   A0A8I5ZTW7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095230   ⟸   ENSRNOT00000105535
Ensembl Acc Id: ENSRNOP00000083182   ⟸   ENSRNOT00000109594
Ensembl Acc Id: ENSRNOP00000088759   ⟸   ENSRNOT00000100606
Ensembl Acc Id: ENSRNOP00000081903   ⟸   ENSRNOT00000118537
Ensembl Acc Id: ENSRNOP00000081598   ⟸   ENSRNOT00000106112
RefSeq Acc Id: XP_063131629   ⟸   XM_063275559
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063131630   ⟸   XM_063275560
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063131640   ⟸   XM_063275570
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063131595   ⟸   XM_063275525
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131633   ⟸   XM_063275563
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063131601   ⟸   XM_063275531
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063131612   ⟸   XM_063275542
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131637   ⟸   XM_063275567
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063131606   ⟸   XM_063275536
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131618   ⟸   XM_063275548
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131614   ⟸   XM_063275544
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131605   ⟸   XM_063275535
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131617   ⟸   XM_063275547
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131624   ⟸   XM_063275554
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131608   ⟸   XM_063275538
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131616   ⟸   XM_063275546
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131603   ⟸   XM_063275533
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131590   ⟸   XM_063275520
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131599   ⟸   XM_063275529
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131622   ⟸   XM_063275552
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131619   ⟸   XM_063275549
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131613   ⟸   XM_063275543
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131607   ⟸   XM_063275537
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131596   ⟸   XM_063275526
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131634   ⟸   XM_063275564
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063131628   ⟸   XM_063275558
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063131638   ⟸   XM_063275568
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063131602   ⟸   XM_063275532
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063131626   ⟸   XM_063275556
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063131593   ⟸   XM_063275523
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131636   ⟸   XM_063275566
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063131598   ⟸   XM_063275528
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131625   ⟸   XM_063275555
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063131631   ⟸   XM_063275561
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063131627   ⟸   XM_063275557
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063131604   ⟸   XM_063275534
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131592   ⟸   XM_063275522
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131615   ⟸   XM_063275545
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131609   ⟸   XM_063275539
- Peptide Label: isoform X3
- UniProtKB: F1LP77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131594   ⟸   XM_063275524
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131620   ⟸   XM_063275550
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131635   ⟸   XM_063275565
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063131597   ⟸   XM_063275527
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131623   ⟸   XM_063275553
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ5 (UniProtKB/Swiss-Prot),   A7VL16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131639   ⟸   XM_063275569
- Peptide Label: isoform X10
Protein Domains
Letm1 RBD   LETM2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQQ5-F1-model_v2 AlphaFold Q5PQQ5 1-459 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700170
Promoter ID:EPDNEW_R10694
Type:single initiation site
Name:Letm2_1
Description:leucine zipper and EF-hand containing transmembrane protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01671,241,337 - 71,241,397EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311220 AgrOrtholog
BioCyc Gene G2FUF-10967 BioCyc
Ensembl Genes ENSRNOG00000026180 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030489 UniProtKB/TrEMBL
  ENSRNOT00000030489.7 UniProtKB/Swiss-Prot
  ENSRNOT00000066144.5 UniProtKB/TrEMBL
  ENSRNOT00000100606.1 UniProtKB/TrEMBL
  ENSRNOT00000105535.1 UniProtKB/TrEMBL
  ENSRNOT00000106112.1 UniProtKB/TrEMBL
  ENSRNOT00000109594.1 UniProtKB/TrEMBL
  ENSRNOT00000118537.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135920 IMAGE-MGC_LOAD
InterPro LETM1/MDM38-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LETM1_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LETM2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361169 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94537 IMAGE-MGC_LOAD
NCBI Gene 361169 ENTREZGENE
PANTHER LETM1 DOMAIN-CONTAINING PROTEIN LETM2, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14009 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LETM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LETM2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Letm2 PhenoGen
PROSITE LETM1_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026180 RatGTEx
UniProt A0A8I5ZTW7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZTZ8_RAT UniProtKB/TrEMBL
  A0A8I5ZYR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A763_RAT UniProtKB/TrEMBL
  A0A8I6APX9_RAT UniProtKB/TrEMBL
  A6IW13 ENTREZGENE, UniProtKB/TrEMBL
  A7VL16 ENTREZGENE
  D3ZXQ6_RAT UniProtKB/TrEMBL
  F1LP77 ENTREZGENE, UniProtKB/TrEMBL
  LETM2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A7VL16 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Letm2  leucine zipper and EF-hand containing transmembrane protein 2  Letm2  leucine zipper-EF-hand containing transmembrane protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Letm2  leucine zipper-EF-hand containing transmembrane protein 2  Letm2_predicted  leucine zipper-EF-hand containing transmembrane protein 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Letm2_predicted  leucine zipper-EF-hand containing transmembrane protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED