Symbol:
Pcid2
Name:
PCI domain containing 2
RGD ID:
1307041
Description:
Predicted to enable RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in several processes, including gene expression; post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery; and regulation of DNA-templated transcription. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nuclear pore nuclear basket and transcription export complex 2. Orthologous to human PCID2 (PCI domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; hexane.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
hypothetical protein LOC361182; LOC361182; PCI domain-containing protein 2; RGD1307041; similar to hypothetical protein FLJ11305; uncharacterized protein LOC361182
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
PCID2 (PCI domain containing 2)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):
Pcid2 (PCI domain containing 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Pcid2 (PCI domain containing 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
PCID2 (PCI domain containing 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
PCID2 (PCI domain containing 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Pcid2 (PCI domain containing 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
PCID2 (PCI domain containing 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
PCID2 (PCI domain containing 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Pcid2 (PCI domain containing 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
WDFY3 (WD repeat and FYVE domain containing 3)
HGNC
OMA
Alliance orthologs 3
Mus musculus (house mouse):
Pcid2 (PCI domain containing 2)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
PCID2 (PCI domain containing 2)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
pcid2 (PCI domain containing 2)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
C27F2.10
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
PCID2
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
THP1
Alliance
DIOPT (Ensembl Compara|PANTHER|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
YJR084W
Alliance
DIOPT (Ensembl Compara|InParanoid|OMA|OrthoInspector|PANTHER|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):
pcid2
Alliance
DIOPT (Ensembl Compara|OMA|OrthoFinder|PANTHER|PhylomeDB)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 16 83,125,386 - 83,150,851 (+) NCBI GRCr8 mRatBN7.2 16 76,423,245 - 76,448,712 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 16 76,423,245 - 76,448,712 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 16 81,703,795 - 81,729,260 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 16 85,156,372 - 85,181,837 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 16 80,405,044 - 80,431,334 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 16 81,757,582 - 81,783,047 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 16 81,756,971 - 81,783,047 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 16 81,242,949 - 81,268,414 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 16 81,280,427 - 81,305,892 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 16 81,279,932 - 81,305,288 (+) NCBI Celera 16 74,229,279 - 74,254,744 (+) NCBI Celera Cytogenetic Map 16 q12.5 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Pcid2 Rat (-)-epigallocatechin 3-gallate multiple interactions ISO PCID2 (Homo sapiens) 6480464 [potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of PCID2 mRNA CTD PMID:22079256 Pcid2 Rat 1,2-dimethylhydrazine increases expression ISO Pcid2 (Mus musculus) 6480464 1 and 2-Dimethylhydrazine results in increased expression of PCID2 mRNA CTD PMID:22206623 Pcid2 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO PCID2 (Homo sapiens) 6480464 Tetrachlorodibenzodioxin affects the expression of PCID2 mRNA CTD PMID:22574217 Pcid2 Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of PCID2 mRNA CTD PMID:33387578 Pcid2 Rat 2,3,7,8-tetrachlorodibenzodioxine multiple interactions ISO Pcid2 (Mus musculus) 6480464 [TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of PCID2 mRNA CTD PMID:25975270 Pcid2 Rat 2-hydroxypropanoic acid increases expression ISO PCID2 (Homo sapiens) 6480464 Lactic Acid results in increased expression of PCID2 mRNA CTD PMID:30851411 Pcid2 Rat 4,4'-sulfonyldiphenol decreases expression ISO Pcid2 (Mus musculus) 6480464 bisphenol S results in decreased expression of PCID2 mRNA CTD PMID:39298647 Pcid2 Rat aflatoxin B1 increases expression ISO PCID2 (Homo sapiens) 6480464 Aflatoxin B1 results in increased expression of PCID2 mRNA CTD PMID:27153756 Pcid2 Rat all-trans-retinoic acid decreases expression ISO PCID2 (Homo sapiens) 6480464 Tretinoin results in decreased expression of PCID2 mRNA CTD PMID:33167477 Pcid2 Rat arsane multiple interactions ISO PCID2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of PCID2 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of PCID2 mRNA CTD PMID:39836092 Pcid2 Rat arsenic atom multiple interactions ISO PCID2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of PCID2 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of PCID2 mRNA CTD PMID:39836092 Pcid2 Rat benzo[a]pyrene multiple interactions ISO Pcid2 (Mus musculus) 6480464 Benzo(a)pyrene promotes the reaction [AHR protein binds to PCID2 promoter] CTD PMID:19654925 Pcid2 Rat benzo[a]pyrene increases methylation ISO PCID2 (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of PCID2 3' UTR CTD PMID:27901495 Pcid2 Rat bis(2-ethylhexyl) phthalate increases expression ISO Pcid2 (Mus musculus) 6480464 Diethylhexyl Phthalate results in increased expression of PCID2 mRNA CTD PMID:34319233 Pcid2 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of PCID2 mRNA CTD PMID:25181051 Pcid2 Rat bisphenol A increases expression ISO PCID2 (Homo sapiens) 6480464 bisphenol A results in increased expression of PCID2 mRNA CTD PMID:33670352 Pcid2 Rat butan-1-ol multiple interactions ISO PCID2 (Homo sapiens) 6480464 [[Gasoline co-treated with 1-Butanol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in decreased expression of PCID2 mRNA CTD PMID:29432896 Pcid2 Rat cannabidiol decreases expression ISO PCID2 (Homo sapiens) 6480464 Cannabidiol results in decreased expression of PCID2 mRNA CTD PMID:27918106 Pcid2 Rat CGP 52608 multiple interactions ISO PCID2 (Homo sapiens) 6480464 CGP 52608 promotes the reaction [RORA protein binds to PCID2 gene] CTD PMID:28238834 Pcid2 Rat copper atom multiple interactions ISO Pcid2 (Mus musculus) 6480464 MT1 affects the reaction [Copper results in increased expression of PCID2 mRNA] and MT2 affects the reaction [Copper results in increased expression of PCID2 mRNA] CTD PMID:16629173 Pcid2 Rat copper(0) multiple interactions ISO Pcid2 (Mus musculus) 6480464 MT1 affects the reaction [Copper results in increased expression of PCID2 mRNA] and MT2 affects the reaction [Copper results in increased expression of PCID2 mRNA] CTD PMID:16629173 Pcid2 Rat Dibutyl phosphate affects expression ISO PCID2 (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of PCID2 mRNA CTD PMID:37042841 Pcid2 Rat dicrotophos decreases expression ISO PCID2 (Homo sapiens) 6480464 dicrotophos results in decreased expression of PCID2 mRNA CTD PMID:28302478 Pcid2 Rat ethanol affects splicing ISO Pcid2 (Mus musculus) 6480464 Ethanol affects the splicing of PCID2 mRNA CTD PMID:30319688 Pcid2 Rat folic acid decreases expression ISO Pcid2 (Mus musculus) 6480464 Folic Acid results in decreased expression of PCID2 mRNA CTD PMID:25629700 Pcid2 Rat formaldehyde decreases expression ISO PCID2 (Homo sapiens) 6480464 Formaldehyde results in decreased expression of PCID2 mRNA CTD PMID:23649840 Pcid2 Rat hexane decreases methylation EXP 6480464 n-hexane results in decreased methylation of PCID2 promoter CTD PMID:23740543 Pcid2 Rat ivermectin decreases expression ISO PCID2 (Homo sapiens) 6480464 Ivermectin results in decreased expression of PCID2 protein CTD PMID:32959892 Pcid2 Rat manganese atom multiple interactions ISO PCID2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of PCID2 mRNA CTD PMID:39836092 Pcid2 Rat manganese(0) multiple interactions ISO PCID2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of PCID2 mRNA CTD PMID:39836092 Pcid2 Rat manganese(II) chloride multiple interactions ISO PCID2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of PCID2 mRNA CTD PMID:39836092 Pcid2 Rat methyl methanesulfonate decreases expression ISO PCID2 (Homo sapiens) 6480464 Methyl Methanesulfonate results in decreased expression of PCID2 mRNA CTD PMID:23649840 Pcid2 Rat ozone multiple interactions ISO PCID2 (Homo sapiens) 6480464 [Air Pollutants results in increased abundance of Ozone] which affects the expression of PCID2 mRNA CTD PMID:35430440 Pcid2 Rat paracetamol increases expression ISO PCID2 (Homo sapiens) 6480464 Acetaminophen results in increased expression of PCID2 mRNA CTD PMID:22230336 Pcid2 Rat potassium chromate decreases expression ISO PCID2 (Homo sapiens) 6480464 potassium chromate(VI) results in decreased expression of PCID2 mRNA CTD PMID:22079256 Pcid2 Rat potassium chromate multiple interactions ISO PCID2 (Homo sapiens) 6480464 [potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of PCID2 mRNA CTD PMID:22079256 Pcid2 Rat rac-lactic acid increases expression ISO PCID2 (Homo sapiens) 6480464 Lactic Acid results in increased expression of PCID2 mRNA CTD PMID:30851411 Pcid2 Rat resveratrol multiple interactions ISO PCID2 (Homo sapiens) 6480464 [Plant Extracts co-treated with Resveratrol] results in increased expression of PCID2 mRNA CTD PMID:23557933 Pcid2 Rat silicon dioxide decreases expression ISO PCID2 (Homo sapiens) 6480464 Silicon Dioxide results in decreased expression of PCID2 mRNA CTD PMID:25351596 Pcid2 Rat sodium arsenite decreases expression ISO PCID2 (Homo sapiens) 6480464 sodium arsenite results in decreased expression of PCID2 mRNA CTD PMID:38568856 Pcid2 Rat sodium arsenite multiple interactions ISO PCID2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of PCID2 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of PCID2 mRNA CTD PMID:39836092 Pcid2 Rat temozolomide decreases expression ISO PCID2 (Homo sapiens) 6480464 Temozolomide results in decreased expression of PCID2 mRNA CTD PMID:31758290 Pcid2 Rat tert-butyl hydroperoxide decreases expression ISO PCID2 (Homo sapiens) 6480464 tert-Butylhydroperoxide results in decreased expression of PCID2 mRNA CTD PMID:15336504 Pcid2 Rat titanium dioxide decreases methylation ISO Pcid2 (Mus musculus) 6480464 titanium dioxide results in decreased methylation of PCID2 gene CTD PMID:35295148 Pcid2 Rat trimellitic anhydride increases expression ISO Pcid2 (Mus musculus) 6480464 trimellitic anhydride results in increased expression of PCID2 mRNA CTD PMID:19042947 Pcid2 Rat triphenyl phosphate affects expression ISO PCID2 (Homo sapiens) 6480464 triphenyl phosphate affects the expression of PCID2 mRNA CTD PMID:37042841 Pcid2 Rat urethane decreases expression ISO PCID2 (Homo sapiens) 6480464 Urethane results in decreased expression of PCID2 mRNA CTD PMID:28818685 Pcid2 Rat valproic acid decreases methylation ISO PCID2 (Homo sapiens) 6480464 Valproic Acid results in decreased methylation of PCID2 gene CTD PMID:29154799 Pcid2 Rat valproic acid decreases expression ISO PCID2 (Homo sapiens) 6480464 Valproic Acid results in decreased expression of PCID2 mRNA CTD PMID:23179753
Pcid2 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 16 83,125,386 - 83,150,851 (+) NCBI GRCr8 mRatBN7.2 16 76,423,245 - 76,448,712 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 16 76,423,245 - 76,448,712 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 16 81,703,795 - 81,729,260 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 16 85,156,372 - 85,181,837 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 16 80,405,044 - 80,431,334 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 16 81,757,582 - 81,783,047 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 16 81,756,971 - 81,783,047 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 16 81,242,949 - 81,268,414 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 16 81,280,427 - 81,305,892 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 16 81,279,932 - 81,305,288 (+) NCBI Celera 16 74,229,279 - 74,254,744 (+) NCBI Celera Cytogenetic Map 16 q12.5 NCBI
PCID2 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 13 113,165,002 - 113,208,669 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 13 113,177,536 - 113,208,715 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 13 113,831,850 - 113,862,983 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 13 112,879,927 - 112,910,984 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 13 94,658,168 - 94,689,275 (-) NCBI Celera Cytogenetic Map 13 q34 NCBI HuRef 13 94,270,740 - 94,301,913 (-) NCBI HuRef CHM1_1 13 113,800,717 - 113,831,888 (-) NCBI CHM1_1 T2T-CHM13v2.0 13 112,427,103 - 112,461,015 (-) NCBI T2T-CHM13v2.0
Pcid2 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 13,125,476 - 13,155,343 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 13,127,189 - 13,155,459 (-) Ensembl GRCm39 Ensembl GRCm38 8 13,075,476 - 13,105,343 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 13,077,189 - 13,105,459 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 13,077,525 - 13,105,343 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 13,077,167 - 13,105,382 (-) NCBI MGSCv36 mm8 Celera 8 13,244,463 - 13,272,258 (-) NCBI Celera Cytogenetic Map 8 A1.1 NCBI cM Map 8 5.73 NCBI
Pcid2 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955404 618,092 - 639,704 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955404 618,092 - 639,424 (+) NCBI ChiLan1.0 ChiLan1.0
PCID2 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 14 114,681,970 - 114,713,034 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 13 113,369,041 - 113,400,323 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 13 94,319,699 - 94,350,763 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 13 113,388,251 - 113,419,523 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 13 113,388,251 - 113,419,251 (-) Ensembl panpan1.1 panPan2
PCID2 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 22 60,602,440 - 60,623,811 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 22 60,602,888 - 60,623,719 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 22 60,314,829 - 60,336,177 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 22 61,228,565 - 61,250,676 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 22 61,228,122 - 61,309,216 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 22 60,726,462 - 60,747,819 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 22 60,728,651 - 60,750,011 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 22 60,760,103 - 60,781,453 (-) NCBI UU_Cfam_GSD_1.0
Pcid2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
PCID2 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 11 78,541,318 - 78,556,733 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 11 78,541,278 - 78,556,784 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 11 86,178,780 - 86,194,261 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
PCID2 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 3 91,163,158 - 91,212,450 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 3 91,177,463 - 91,211,735 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666046 48,212,929 - 48,249,687 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Pcid2 (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 421 Count of miRNA genes: 242 Interacting mature miRNAs: 282 Transcripts: ENSRNOT00000044085 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
2300163 Bmd64 Bone mineral density QTL 64 5.3 0.0001 lumbar vertebra mineral mass (VT:0010511) volumetric bone mineral density (CMO:0001553) 16 37752156 82752156 Rat 7411648 Foco22 Food consumption QTL 22 15 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 16 52726464 84729064 Rat 1600378 Arunc4 Aerobic running capacity QTL 4 0.03 exercise endurance trait (VT:0002332) maximum distance run on treadmill (CMO:0001406) 16 380245 80345693 Rat 1578768 Stresp22 Stress response QTL 22 2.8 thymus mass (VT:0004954) thymus wet weight (CMO:0000855) 16 35288870 80288870 Rat 2293690 Bss45 Bone structure and strength QTL 45 5.13 0.0001 lumbar vertebra morphology trait (VT:0010494) lumbar vertebra cortical cross-sectional area (CMO:0001690) 16 37752156 82752156 Rat 8694364 Abfw7 Abdominal fat weight QTL 7 12.22 0.001 visceral adipose mass (VT:0010063) abdominal fat pad weight to body weight ratio (CMO:0000095) 16 52726464 84729064 Rat 8694429 Bw164 Body weight QTL 164 5 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 16 52726464 84729064 Rat 7205510 Activ5 Activity QTL 5 3.78 0.00028 locomotor behavior trait (VT:0001392) number of entries into a discrete space in an experimental apparatus (CMO:0000960) 16 42396345 84729064 Rat 70205 Gcr3 Gastric cancer resistance QTL 3 2.3 stomach morphology trait (VT:0000470) stomach tumor diameter (CMO:0001889) 16 17696791 82635055 Rat 631525 Pia14 Pristane induced arthritis QTL 14 4.4 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 16 55711087 83402471 Rat
RH130153
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 16 76,448,462 - 76,448,676 (+) MAPPER mRatBN7.2 Rnor_6.0 16 81,782,798 - 81,783,011 NCBI Rnor6.0 Rnor_5.0 16 81,268,165 - 81,268,378 UniSTS Rnor5.0 RGSC_v3.4 16 81,305,643 - 81,305,856 UniSTS RGSC3.4 Celera 16 74,254,495 - 74,254,708 UniSTS RH 3.4 Map 16 743.1 UniSTS Cytogenetic Map 16 q12.5 UniSTS
RH133856
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 16 76,447,495 - 76,447,693 (+) MAPPER mRatBN7.2 Rnor_6.0 16 81,781,831 - 81,782,028 NCBI Rnor6.0 Rnor_5.0 16 81,267,198 - 81,267,395 UniSTS Rnor5.0 RGSC_v3.4 16 81,304,676 - 81,304,873 UniSTS RGSC3.4 Celera 16 74,253,528 - 74,253,725 UniSTS RH 3.4 Map 16 742.0 UniSTS Cytogenetic Map 16 q12.5 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000044085 ⟹ ENSRNOP00000049378
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 16 76,423,245 - 76,448,712 (+) Ensembl Rnor_6.0 Ensembl 16 81,756,971 - 81,783,047 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000116016 ⟹ ENSRNOP00000082024
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 16 76,423,245 - 76,448,712 (+) Ensembl
RefSeq Acc Id:
NM_001169144 ⟹ NP_001162615
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 16 83,125,386 - 83,150,851 (+) NCBI mRatBN7.2 16 76,423,245 - 76,448,712 (+) NCBI Rnor_6.0 16 81,757,582 - 81,783,047 (+) NCBI Rnor_5.0 16 81,242,949 - 81,268,414 (+) NCBI RGSC_v3.4 16 81,280,427 - 81,305,892 (+) RGD Celera 16 74,229,279 - 74,254,744 (+) RGD
Sequence:
CCGCGGCTGCTGCTATGGCGCACATCACCATTAACCAGTACCTGCAGCAGGTATATGAAGCCATTGACACCAGAGATGGAGCGTCCTGTGCAGAGCTGGTGTCCTTCAAGCACCCTCATGTCGCGAAC CCACGGCTCCAGATGGCCTCTCCAGAAGAGAAATGCCAGCAAGTTTTGGAGCCCCCTTATGACGAAATGTTTGCGGCTCATTTAAGGTGTACCTACGCTGTGGGGAATCACGACTTCATAGAGGCGTA CAAATGCCAGACAGTGATAGTCCAATCATTCCTTCGGGCTTTCCAGGCTCACAAAGAAGAAAACTGGGCTCTGCCTGTCATGTACGCAGTAGCACTTGACCTCCGCGTGTTTGCCAATAATGCAGATC AGCAGTTGGTAAAGAAGGGGAAGAGCAAAGTTGGAGACATGCTGGAAAAGGCCGCCGAGCTGCTGATGAGCTGCTTCCGAGTCTGCGCCAGTGACACCCGCGCTGGCATAGAGGACTCTAAGAAGTGG GGGATGCTGTTCCTGGTGAACCAACTATTTAAAATCTACTTCAAGATCAACAAACTCCATTTGTGTAAACCTCTTATCAGAGCCATCGACAGCTCGAATCTGAAAGATGACTATAGCACGGCACAGAG GGTCACATACAAGTACTATGTGGGGCGCAAGGCCATGTTTGACAGTGACTTCAAGCAAGCTGAGGAGTACCTGTCGTTTGCCTTTGAGCACTGCCATCGCTCCAGCCAGAAGAACAAGAGGATGATTC TGATCTACCTGCTGCCAGTGAAGATGCTGCTGGGTCACATGCCGACCATCGAGCTCCTGAGGAAGTACCACCTGATGCAGTTCTCAGAAGTGACCAGAGCTGTCAGTGAGGGCAACCTGCTGCTGCTC AATGAGGCGCTGGCAAAGCACGAGACTTTCTTCATCCGCTGTGGTATCTTCCTCATCCTGGAGAAGCTGAAGATCATCACTTACAGGAACCTCTTCAAGAAAGTATATTTGCTACTCAAAACACATCA GCTGTCTCTAGATGCCTTTCTGGTTGCTTTGAAGTTCATGCACGTGGAAGATGTGGACATTGACGAAGTCCAGTGCATTCTGGCCAACTTGATACACATGGGTCACATTAAAGGTTATATCTCCCATC AGCATCAGAAACTGGTCGTCAGCAAGCAGAACCCTTTCCCTCCGCTGTCCACGGTGTGCTAAGGCCCAGGCCCTGCAGGTGGAGAGCTCCTTTTGCAGCTGTCCTCTGTAGCTCAAGTCTCCGGGGCT TCCCCAGCCCCCCGAGGCAGCTGCCAGCACCTGAGGGACTCGCCGTGTTCCCATTGTCCTAATCATGCCAGCCTCGCTAAGACCTGGAATTCTTTTTCAGGACGGACAAACAGCCTGCTGCTGGCCTG TGGTGCCTGTGAACTTCTGGGAGGGAAACAGCTATGCTTCCGTTTTATGTTGTTTATGGAGGCTGTCTTTGTAACACTTTGTAGTGTTTTCTTTCTTTCCTTCTTTCTCTCTTCCTTTTTAAGAACAG GTAATCCACATTTATACAGCGGGCGGGCGCCTTCTTGTGTGTTAAGTGATGTATCTATTTTCATATGCGAAATGTCAGCCTTTTGTGAGCTCAAAATGCTTAGTTAACTTGAGGCTTCTTTTTAAAAA GTAGAATTTAGGGGCTGGGGATTTGGCTCAGTGGCAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACAAAAAAAAAAAAAAAAAAGTAGAATTTAGGGG GTGGAGAGGTGGTTCAGTCAAGACAGCTACTGCTGTGCCAGAGGGGGTGTGTTTGTTTCCTAGCATTCACATGGCAGCTCACAGCCATCTAACTCCAGTTCTAGGAATCCATTGCTTTTGGCCTCCAT GGGCTCCTGCACATGTATGTACATAAGCTTACTCGGGCAAACGGGCAAATGTAAGCAAATAAGTCTTCTTAAAGAAAAGCAGAATTTAGTCTGATGTAAAATTTTCAGCTCTCTGCTCATTTTCCTAT GGTTCTGAAGGCTATGGGACTAAGGCAAGGCCTGACTGTTGGGCTCTGGTCAGGGGCCCTTCTGCGCTACTGTTGCTTGTCCTCGGCCTCTCTTCCTTTTCCTACAGCCTCTGTGCTGCCAGGCCCTC ACTCTGCAGCTATGTCCAGCTTAACCCCTTCCAGAAACTCTGTCTCTAGGCAGTTGGCCTGGACAGGGCTTCAGCAAAAGATTCTGGGCACAAAACATCCTGCAGTGCTGGAGACTGCTGCTGCTTTC TCCTTCCTCTTCTTCCTCCTCTTCCTCCTCTTCTTTTTAATAAATAGTTTATTTATTTTA
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RefSeq Acc Id:
XM_063275578 ⟹ XP_063131648
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 16 83,138,344 - 83,150,851 (+) NCBI
RefSeq Acc Id:
NP_001162615 ⟸ NM_001169144
- UniProtKB:
B1H263 (UniProtKB/TrEMBL), F1MAF5 (UniProtKB/TrEMBL)
- Sequence:
MAHITINQYLQQVYEAIDTRDGASCAELVSFKHPHVANPRLQMASPEEKCQQVLEPPYDEMFAAHLRCTYAVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVALDLRVFANNADQQLVK KGKSKVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLL PVKMLLGHMPTIELLRKYHLMQFSEVTRAVSEGNLLLLNEALAKHETFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMHVEDVDIDEVQCILANLIHMGHIKGYISHQHQKL VVSKQNPFPPLSTVC
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Ensembl Acc Id:
ENSRNOP00000049378 ⟸ ENSRNOT00000044085
Ensembl Acc Id:
ENSRNOP00000082024 ⟸ ENSRNOT00000116016
RefSeq Acc Id:
XP_063131648 ⟸ XM_063275578
- Peptide Label:
isoform X1
RGD ID: 13700235
Promoter ID: EPDNEW_R10758
Type: multiple initiation site
Name: Pcid2_1
Description: PCI domain containing 2
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 16 81,757,573 - 81,757,633 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2012-10-10
Pcid2
PCI domain containing 2
RGD1307041
similar to hypothetical protein FLJ11305
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-04-30
RGD1307041
similar to hypothetical protein FLJ11305
RGD1307041_predicted
similar to hypothetical protein FLJ11305 (predicted)
'predicted' is removed
2292626
APPROVED
2005-01-20
RGD1307041_predicted
similar to hypothetical protein FLJ11305 (predicted)
LOC361182_predicted
Symbol and Name status set to approved
1331353
APPROVED
2005-01-12
LOC361182_predicted
similar to hypothetical protein FLJ11305 (predicted)
Symbol and Name status set to provisional
70820
PROVISIONAL