Armc6 (armadillo repeat containing 6)

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Gene: Armc6 (armadillo repeat containing 6) Rattus norvegicus

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Symbol:

Armc6

Name:

armadillo repeat containing 6

RGD ID:

1306691

Description:

Predicted to act upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in cytosol. Orthologous to human ARMC6 (armadillo repeat containing 6); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

armadillo repeat-containing protein 6; LOC306352; RGD1306691; similar to hypothetical gene MGC19595

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,225,058 - 19,235,479 (+)	NCBI		GRCr8
mRatBN7.2	16	19,191,106 - 19,201,528 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,191,093 - 19,206,047 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	19,230,830 - 19,241,247 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,363,264 - 20,373,681 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,283,790 - 19,294,207 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,939,311 - 20,949,732 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,939,655 - 20,954,246 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,789,624 - 20,799,784 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,673,507 - 19,684,605 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	19,676,976 - 19,718,582 (+)	NCBI
Celera	16	19,379,904 - 19,390,160 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ISO)

progressive myoclonus epilepsy 8 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3-chloropropane-1,2-diol (EXP)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

copper atom (ISO)

copper(0) (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

fenthion (ISO)

gamma-hexachlorocyclohexane (EXP)

inulin (ISO)

methidathion (ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (EXP,ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

thioacetamide (EXP)

thiram (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic progenitor cell differentiation (IBA,ISO)

Cellular Component

cytosol (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:24029230

Genomics

Comparative Map Data

Armc6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,225,058 - 19,235,479 (+)	NCBI		GRCr8
mRatBN7.2	16	19,191,106 - 19,201,528 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,191,093 - 19,206,047 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	19,230,830 - 19,241,247 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,363,264 - 20,373,681 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,283,790 - 19,294,207 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,939,311 - 20,949,732 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,939,655 - 20,954,246 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,789,624 - 20,799,784 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,673,507 - 19,684,605 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	19,676,976 - 19,718,582 (+)	NCBI
Celera	16	19,379,904 - 19,390,160 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

ARMC6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	19,033,603 - 19,058,176 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	19,033,575 - 19,060,311 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	19,144,412 - 19,168,985 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,005,471 - 19,029,980 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	19,005,470 - 19,029,978	NCBI
Celera	19	19,049,287 - 19,073,824 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,708,171 - 18,732,868 (+)	NCBI		HuRef
CHM1_1	19	19,144,075 - 19,168,685 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	19,169,394 - 19,193,996 (+)	NCBI		T2T-CHM13v2.0

Armc6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,672,822 - 70,687,099 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,672,822 - 70,687,116 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	70,220,172 - 70,234,446 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,220,172 - 70,234,466 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,744,091 - 72,758,321 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	72,744,091 - 72,758,321 (-)	NCBI		MGSCv36	mm8
Celera	8	72,776,987 - 72,790,963 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.15	NCBI

Armc6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,692,758 - 2,709,262 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,695,720 - 2,709,163 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARMC6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	23,894,956 - 23,922,087 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	22,901,404 - 22,928,208 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,471,692 - 18,497,896 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,474,314 - 19,500,644 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,474,320 - 19,498,511 (+)	Ensembl	panpan1.1		panPan2

ARMC6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	44,079,993 - 44,097,353 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	44,080,541 - 44,092,501 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	43,996,613 - 44,014,135 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,568,002 - 44,585,586 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,568,006 - 44,585,566 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	43,805,393 - 43,822,918 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	44,214,681 - 44,232,213 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,490,346 - 44,507,869 (-)	NCBI		UU_Cfam_GSD_1.0

Armc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	202,776,632 - 202,792,194 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	2,322,530 - 2,341,544 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	2,325,892 - 2,341,354 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARMC6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,808,692 - 58,828,489 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,808,691 - 58,828,483 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	58,606,516 - 58,627,216 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARMC6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,496,163 - 17,523,144 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	17,496,215 - 17,523,298 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	1,798,995 - 1,826,286 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Armc6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	2,013,707 - 2,030,219 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	2,013,548 - 2,030,219 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Armc6
42 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	113
Count of miRNA genes:	95
Interacting mature miRNAs:	101
Transcripts:	ENSRNOT00000027550
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15726433	21034895	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Markers in Region

RH128081

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	19,205,783 - 19,205,980 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	20,953,986 - 20,954,182	NCBI	Rnor6.0
Rnor_5.0	16	20,804,041 - 20,804,237	UniSTS	Rnor5.0
RGSC_v3.4	16	19,688,859 - 19,689,055	UniSTS	RGSC3.4
Celera	16	19,394,410 - 19,394,606	UniSTS
RH 3.4 Map	16	219.8	UniSTS
Cytogenetic Map	16	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027550 ⟹ ENSRNOP00000027550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	19,191,093 - 19,206,047 (+)	Ensembl
Rnor_6.0 Ensembl	16	20,939,655 - 20,954,246 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096885 ⟹ ENSRNOP00000079894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	19,191,093 - 19,205,590 (+)	Ensembl

RefSeq Acc Id:

NM_001107306 ⟹ NP_001100776

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,225,058 - 19,235,479 (+)	NCBI
mRatBN7.2	16	19,191,106 - 19,201,528 (+)	NCBI
Rnor_6.0	16	20,939,311 - 20,949,732 (+)	NCBI
Rnor_5.0	16	20,789,624 - 20,799,784 (+)	NCBI
RGSC_v3.4	16	19,673,507 - 19,684,605 (+)	RGD
Celera	16	19,379,904 - 19,390,160 (+)	RGD

Sequence:

show sequence

TACGCAAGCGTCGAAAGTAGCCATGTTGGCTCTTTCACGCAGGCGCGTTGCTGAATTCTCAGGG
CAGATTATACCTAGGTGAAAACTATCTCTTTTAAGGGGAAGCGACACCTAGAAGGAGCATTGAG
AAGACTGCAAGGGTTTCAGGCCCACACGTACTCTGTGTCTCCCTTTGCTTTACCTGTGCTTGCG
GTCGCCCTCGTTGCCCCGGGAAGGAGCCTTTCAGCTGAAGGAGGGACGCCGAGCCGAGGCGACG
CCTCTGCGCTTGCGCGTGTACAGTGGCCGGAAGGAGCCAAAGTAAAGTCAAGTCTCCGGTGACA
GCTGCGAGCCCCACCCTTTCCCCACGTGGCTGCGTAGACCTGGCAGCCATGGCTTCCAAGCGCA
TCACCCAGGAAACCTTTGATGCTGCAGTGAGGGAGAACATTGAGGAGTTTGAGATGGGCGCTGA
GGAGGCCATTCGAGAGGCTGTGGAGCAGTTTGAATCGCAAGGGGTTGATCTGAGCAACATTGTG
AAGACAGTACCGAAAGTATCCTTGGATGGCCTCCAGGAGCCCACACATGATGTCCTACAGGCTC
TCAATGATCTGCAGCAGGCCCTGACTGGCTCTCAGCTCCAGGAGGTGTCTGCCCATCTTGTCCG
TTTCTGTGACCAGTGCAAGCAGCAGAAAGCCAGCCGCTACCTGGCAGCCCAGAAGGGGGCCTAC
CCAATCCTCCTGGCTGCTTGGCAGCTGGCTGCCACTAGCGACCAGGGTCTTCTGCTCCAGGCTC
TCAATGCCCTGGCAGTGCTGACTGATGGCCAACCTGACCTCCTGGATACTCAGGGCTTGCATCT
TCTCGTGGCCACGCTGGCACGGAATGCTGCCAACACTGAACTCACATGCTGTGGGATTCGCTGT
GTGCGCCATGTCTGCCTAAAGCATGAACAGAATCGGCAGGGCTTGGTGAAAGCCGGTGTGCTGC
CCCTGCTCACGGCTGCTATTACACAGCATGGTCAACACGCCGATGTGGTCAGGGAGGCCTGCTG
GGCCTTGCGGGTCATGACCTTCGATGATGATATCAGAGTGCCCTTTGGCCATGCCCACGAGCAT
GCCAAGATGATTGTTCAGGAGAACAGAGGCCTGAAGGTGCTCATTGAGGCTGCCAGAGGTAGGA
GCAGCACTGGTAAGAGGAGGGTAGGCCTGCTTCTCAGCTAGAAGAATGAGCTCCCAGCCTGCCC
TGTGGTTCCACCTCCATAGGGGGCCTGTGCATGGGATCTCCACTCCTCTGGGAGATGGGAAAAC
CTTTCTCAGTCCCTGTTCTGTACCCCAACAGTGGCTGAGGAATGAGGCCCGCCTGACCATCTGT
AAAGCCGGCCAGCTTCTTAATTGTTTGCACTTCTGTGCTTGTTTATGGCAGCTTGAAATTGGCT
AATTAGGGGTAGAGCAGGAGTGCAAACTTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100776	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66821	(Get FASTA)	NCBI Sequence Viewer
	EDL90663	(Get FASTA)	NCBI Sequence Viewer
	EDL90664	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027550.7
	ENSRNOP00000079894.1

RefSeq Acc Id:

NP_001100776 ⟸ NM_001107306

- UniProtKB:

A6KA73 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASKRITQETFDAAVRENIEEFEMGAEEAIREAVEQFESQGVDLSNIVKTVPKVSLDGLQEPTH
DVLQALNDLQQALTGSQLQEVSAHLVRFCDQCKQQKASRYLAAQKGAYPILLAAWQLAATSDQG
LLLQALNALAVLTDGQPDLLDTQGLHLLVATLARNAANTELTCCGIRCVRHVCLKHEQNRQGLV
KAGVLPLLTAAITQHGQHADVVREACWALRVMTFDDDIRVPFGHAHEHAKMIVQENRGLKVLIE
AARGRSSTGKRRVGLLLS

hide sequence

Ensembl Acc Id:

ENSRNOP00000027550 ⟸ ENSRNOT00000027550

Ensembl Acc Id:

ENSRNOP00000079894 ⟸ ENSRNOT00000096885

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYL4-F1-model_v2	AlphaFold	B2RYL4	1-468	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700063

Promoter ID:

EPDNEW_R10564

Type:

multiple initiation site

Name:

Armc6_1

Description:

Armadillo repeat-containing protein 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	20,939,646 - 20,939,706	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306691	AgrOrtholog
BioCyc Gene	G2FUF-11763	BioCyc
Ensembl Genes	ENSRNOG00000020280	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027550.8	UniProtKB/TrEMBL
	ENSRNOT00000096885.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8368184	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Armadillo	UniProtKB/TrEMBL
KEGG Report	rno:306352	UniProtKB/TrEMBL
MGC_CLONE	MGC:188699	IMAGE-MGC_LOAD
NCBI Gene	306352	ENTREZGENE
PANTHER	PTHR22895:SF0	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	Arm	UniProtKB/TrEMBL
PhenoGen	Armc6	PhenoGen
PROSITE	ARM_REPEAT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020280	RatGTEx
SMART	ARM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
UniProt	A0A8I5ZPH0_RAT	UniProtKB/TrEMBL
	A0A9K3Y7P0_RAT	UniProtKB/TrEMBL
	A6KA73	ENTREZGENE, UniProtKB/TrEMBL
	B2RYL4_RAT	UniProtKB/TrEMBL
UniProt Secondary	F7F1L0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-10-05	Armc6	armadillo repeat containing 6	Armc6	armadillo repeat containing 6	Data merged from RGD:15003489	737654	PROVISIONAL
2020-10-01	Armc6	armadillo repeat containing 6	Armc6l1	armadillo repeat containing 6 like-1	Symbol and/or name change	19259462	PROVISIONAL
2020-09-29	Armc6l1	armadillo repeat containing 6 like-1	Armc6	armadillo repeat containing 6	Name and Symbol changed	629549	APPROVED
2019-11-08	Armc6	armadillo repeat containing 6			Symbol and Name status set to provisional	45752	PROVISIONAL
2008-04-30	Armc6	armadillo repeat containing 6	Armc6_predicted	armadillo repeat containing 6 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Armc6_predicted	armadillo repeat containing 6 (predicted)	RGD1306691_predicted	similar to hypothetical gene MGC19595 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306691_predicted	similar to hypothetical gene MGC19595 (predicted)	LOC306352_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC306352_predicted	similar to hypothetical gene MGC19595 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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