Armc6 (armadillo repeat containing 6) - Rat Genome Database
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Gene: Armc6 (armadillo repeat containing 6) Mus musculus
Analyze
Symbol: Armc6
Name: armadillo repeat containing 6
RGD ID: 1550702
MGI Page MGI
Description: Involved in hematopoietic progenitor cell differentiation. Predicted to localize to cytosol. Orthologous to human ARMC6 (armadillo repeat containing 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 2410153K17Rik; armadillo repeat-containing protein 6; AW554412; MGC67564
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,672,822 - 70,687,099 (-)NCBIGRCm39mm39
GRCm38870,220,172 - 70,234,446 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,220,172 - 70,234,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv37872,744,091 - 72,758,321 (-)NCBIGRCm37mm9NCBIm37
MGSCv36872,744,091 - 72,758,321 (-)NCBImm8
Celera872,776,987 - 72,790,963 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12594045   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:24029230   PMID:28378742  


Genomics

Comparative Map Data
Armc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,672,822 - 70,687,099 (-)NCBIGRCm39mm39
GRCm38870,220,172 - 70,234,446 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,220,172 - 70,234,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv37872,744,091 - 72,758,321 (-)NCBIGRCm37mm9NCBIm37
MGSCv36872,744,091 - 72,758,321 (-)NCBImm8
Celera872,776,987 - 72,790,963 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
ARMC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1919,033,575 - 19,060,311 (+)EnsemblGRCh38hg38GRCh38
GRCh381919,033,603 - 19,058,176 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371919,144,387 - 19,168,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361919,005,471 - 19,029,980 (+)NCBINCBI36hg18NCBI36
Build 341919,005,470 - 19,029,978NCBI
Celera1919,049,287 - 19,073,824 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1918,708,171 - 18,732,868 (+)NCBIHuRef
CHM1_11919,144,075 - 19,168,685 (+)NCBICHM1_1
Armc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,939,311 - 20,949,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,939,655 - 20,954,246 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,789,624 - 20,799,784 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,673,507 - 19,684,605 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11619,676,976 - 19,718,582 (+)NCBI
Celera1619,379,904 - 19,390,160 (+)NCBICelera
Cytogenetic Map16p14NCBI
Armc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,692,758 - 2,709,262 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,695,720 - 2,709,163 (-)NCBIChiLan1.0ChiLan1.0
ARMC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11919,474,314 - 19,500,644 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,474,320 - 19,498,511 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01918,471,692 - 18,497,896 (+)NCBIMhudiblu_PPA_v0panPan3
ARMC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2044,080,541 - 44,092,501 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12044,079,993 - 44,097,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Armc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365962,325,892 - 2,341,354 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,808,689 - 58,828,479 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,808,691 - 58,828,483 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,606,516 - 58,627,216 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARMC6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,496,163 - 17,523,144 (+)NCBI
ChlSab1.1 Ensembl617,496,215 - 17,523,298 (+)Ensembl
Armc6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249082,013,548 - 2,030,219 (+)NCBI

Position Markers
AI326393  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,220,361 - 70,220,501UniSTSGRCm38
MGSCv37872,744,260 - 72,744,400UniSTSGRCm37
Celera872,777,156 - 72,777,296UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH61408.45UniSTS
AW554412  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,220,668 - 70,220,772UniSTSGRCm38
MGSCv37872,744,567 - 72,744,671UniSTSGRCm37
Celera872,777,463 - 72,777,567UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8741.8UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1170
Count of miRNA genes:569
Interacting mature miRNAs:681
Transcripts:ENSMUST00000019679, ENSMUST00000130319, ENSMUST00000135931, ENSMUST00000136666, ENSMUST00000139765, ENSMUST00000147387
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000019679   ⟹   ENSMUSP00000019679
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,220,172 - 70,234,466 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130319   ⟹   ENSMUSP00000116811
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,225,318 - 70,234,126 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,224,610 - 70,234,449 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136666
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,220,477 - 70,222,290 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139765
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,220,198 - 70,222,789 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147387
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,223,186 - 70,225,177 (-)Ensembl
RefSeq Acc Id: NM_133972   ⟹   NP_598733
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,672,842 - 70,687,072 (-)NCBI
GRCm38870,220,192 - 70,234,422 (-)NCBI
MGSCv37872,744,091 - 72,758,321 (-)RGD
Celera872,776,987 - 72,790,963 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011242332   ⟹   XP_011240634
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,672,822 - 70,687,099 (-)NCBI
GRCm38870,220,172 - 70,234,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242333   ⟹   XP_011240635
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,672,822 - 70,686,776 (-)NCBI
GRCm38870,220,172 - 70,234,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242334   ⟹   XP_011240636
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,672,822 - 70,686,765 (-)NCBI
GRCm38870,220,172 - 70,233,902 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243841   ⟹   XP_030099701
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,672,822 - 70,686,781 (-)NCBI
GRCm38870,220,172 - 70,234,132 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243842   ⟹   XP_030099702
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,672,822 - 70,686,798 (-)NCBI
GRCm38870,220,172 - 70,234,148 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_598733   ⟸   NM_133972
- UniProtKB: Q8BNU0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240634   ⟸   XM_011242332
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011240635   ⟸   XM_011242333
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011240636   ⟸   XM_011242334
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030099702   ⟸   XM_030243842
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030099701   ⟸   XM_030243841
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000116811   ⟸   ENSMUST00000130319
RefSeq Acc Id: ENSMUSP00000019679   ⟸   ENSMUST00000019679

Promoters
RGD ID:8667291
Promoter ID:EPDNEW_M11676
Type:initiation region
Name:Armc6_1
Description:Mus musculus armadillo repeat containing 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,234,414 - 70,234,474EPDNEW
RGD ID:6842795
Promoter ID:MM_KWN:54675
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Kidney,   Lung
Transcripts:OTTMUST00000052757,   OTTMUST00000052758
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,746,231 - 72,746,782 (-)MPROMDB
RGD ID:6842792
Promoter ID:MM_KWN:54677
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000052753,   OTTMUST00000052754,   OTTMUST00000052756
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,758,116 - 72,758,782 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924063 AgrOrtholog
Ensembl Genes ENSMUSG00000002343 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000019679 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116811 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019679 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130319 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  Armadillo UniProtKB/Swiss-Prot
  ARMC6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76813 UniProtKB/Swiss-Prot
MGD MGI:1924063 ENTREZGENE
NCBI Gene 76813 ENTREZGENE
PANTHER PTHR22895:SF0 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Arm UniProtKB/Swiss-Prot
PhenoGen Armc6 PhenoGen
PROSITE ARM_REPEAT UniProtKB/Swiss-Prot
SMART ARM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniGene Mm.383251 ENTREZGENE
UniProt ARMC6_MOUSE UniProtKB/Swiss-Prot
  D3Z3J0_MOUSE UniProtKB/TrEMBL
  Q8BNU0 ENTREZGENE
UniProt Secondary Q8C4P5 UniProtKB/Swiss-Prot
  Q8C7S1 UniProtKB/Swiss-Prot
  Q8K2S7 UniProtKB/Swiss-Prot
  Q99JQ2 UniProtKB/Swiss-Prot
  Q9CWE4 UniProtKB/Swiss-Prot