Ttc17 (tetratricopeptide repeat domain 17) - Rat Genome Database

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Gene: Ttc17 (tetratricopeptide repeat domain 17) Rattus norvegicus
Analyze
Symbol: Ttc17
Name: tetratricopeptide repeat domain 17
RGD ID: 1305410
Description: Predicted to be involved in actin filament polymerization and cilium organization. Located in cytoplasm. Orthologous to human TTC17 (tetratricopeptide repeat domain 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC311224; tetratricopeptide repeat protein 17; TPR repeat protein 17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,718,820 - 100,829,464 (-)NCBIGRCr8
mRatBN7.2380,263,488 - 80,374,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl380,263,495 - 80,373,812 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,733,246 - 83,843,391 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0392,332,317 - 92,442,459 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0390,181,745 - 90,285,017 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0383,198,829 - 83,306,622 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl383,198,821 - 83,306,781 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,898,702 - 90,006,238 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,736,486 - 78,815,334 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,602,588 - 78,711,776 (-)NCBI
Celera379,490,280 - 79,568,165 (-)NCBICelera
Cytogenetic Map3q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (IBA,ISO,ISS)
cytoplasm  (IBA,IDA,ISO)
cytosol  (IEA,ISO)
plasma membrane  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human. Bontems F, etal., PLoS One. 2014 Jan 27;9(1):e86476. doi: 10.1371/journal.pone.0086476. eCollection 2014.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Ttc17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,718,820 - 100,829,464 (-)NCBIGRCr8
mRatBN7.2380,263,488 - 80,374,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl380,263,495 - 80,373,812 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,733,246 - 83,843,391 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0392,332,317 - 92,442,459 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0390,181,745 - 90,285,017 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0383,198,829 - 83,306,622 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl383,198,821 - 83,306,781 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,898,702 - 90,006,238 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,736,486 - 78,815,334 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,602,588 - 78,711,776 (-)NCBI
Celera379,490,280 - 79,568,165 (-)NCBICelera
Cytogenetic Map3q31NCBI
TTC17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381143,358,920 - 43,494,931 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1143,358,920 - 43,494,933 (+)EnsemblGRCh38hg38GRCh38
GRCh371143,380,470 - 43,516,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361143,337,067 - 43,472,078 (+)NCBINCBI36Build 36hg18NCBI36
Build 341143,337,066 - 43,472,069NCBI
Celera1143,527,449 - 43,663,453 (+)NCBICelera
Cytogenetic Map11p12-p11.2NCBI
HuRef1143,090,543 - 43,226,576 (+)NCBIHuRef
CHM1_11143,380,061 - 43,516,094 (+)NCBICHM1_1
T2T-CHM13v2.01143,514,345 - 43,650,321 (+)NCBIT2T-CHM13v2.0
Ttc17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39294,131,111 - 94,237,034 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl294,131,112 - 94,237,034 (-)EnsemblGRCm39 Ensembl
GRCm38294,300,766 - 94,406,710 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl294,300,767 - 94,406,689 (-)EnsemblGRCm38mm10GRCm38
MGSCv37294,140,923 - 94,246,846 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36294,140,923 - 94,246,846 (-)NCBIMGSCv36mm8
Celera295,697,774 - 95,803,320 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.69NCBI
Ttc17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554224,019,612 - 4,119,521 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554224,019,755 - 4,119,522 (-)NCBIChiLan1.0ChiLan1.0
TTC17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2945,566,684 - 45,710,324 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11145,579,217 - 45,718,947 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01143,319,838 - 43,455,647 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11143,800,224 - 43,951,417 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1143,800,293 - 43,952,853 (+)Ensemblpanpan1.1panPan2
TTC17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11826,201,423 - 26,317,971 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1826,201,938 - 26,318,230 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,891,349 - 26,008,032 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01826,826,116 - 26,942,695 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1826,826,116 - 26,942,679 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11826,335,188 - 26,451,677 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,981,818 - 26,098,564 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01826,593,813 - 26,710,370 (-)NCBIUU_Cfam_GSD_1.0
Ttc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494723,003,869 - 23,111,963 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365625,116,518 - 5,223,571 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365625,115,507 - 5,223,587 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl218,807,530 - 18,954,667 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1218,807,521 - 18,954,667 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2220,604,627 - 20,659,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,877,626 - 22,021,525 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,877,596 - 22,021,456 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038119,113,861 - 119,256,188 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247674,482,095 - 4,589,446 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247674,484,259 - 4,589,392 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttc17
624 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:99
Interacting mature miRNAs:116
Transcripts:ENSRNOT00000014088
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat

Markers in Region
D3Rat36  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2380,367,329 - 80,367,507 (+)MAPPERmRatBN7.2
Rnor_6.0383,300,114 - 83,300,291NCBIRnor6.0
Rnor_5.0389,999,731 - 89,999,908UniSTSRnor5.0
RGSC_v3.4378,808,864 - 78,809,041UniSTSRGSC3.4
RGSC_v3.4378,808,731 - 78,809,051RGDRGSC3.4
RGSC_v3.1378,705,292 - 78,705,469RGD
Celera379,561,691 - 79,561,868UniSTS
RH 3.4 Map3691.6RGD
RH 3.4 Map3691.6UniSTS
RH 2.0 Map3457.9RGD
SHRSP x BN Map342.7898RGD
Cytogenetic Map3q31UniSTS
D3Rat223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2380,245,020 - 80,245,184 (+)MAPPERmRatBN7.2
Rnor_6.0383,180,261 - 83,180,424NCBIRnor6.0
Rnor_5.0389,880,956 - 89,881,119UniSTSRnor5.0
RGSC_v3.4378,691,899 - 78,692,063RGDRGSC3.4
RGSC_v3.4378,691,900 - 78,692,063UniSTSRGSC3.4
RGSC_v3.1378,588,327 - 78,588,491RGD
Celera379,445,273 - 79,445,434UniSTS
SHRSP x BN Map342.7898UniSTS
SHRSP x BN Map342.7898RGD
Cytogenetic Map3q31UniSTS
RH131990  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2380,263,412 - 80,263,697 (+)MAPPERmRatBN7.2
mRatBN7.2380,263,515 - 80,263,697 (+)MAPPERmRatBN7.2
Rnor_6.0383,198,857 - 83,199,038NCBIRnor6.0
Rnor_6.0383,198,643 - 83,199,038NCBIRnor6.0
Rnor_5.0389,898,730 - 89,898,911UniSTSRnor5.0
Rnor_5.0389,898,516 - 89,898,911UniSTSRnor5.0
RH 3.4 Map3705.4UniSTS
Cytogenetic Map3q31UniSTS
AI169236  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2380,352,297 - 80,352,390 (+)MAPPERmRatBN7.2
Rnor_6.0383,285,082 - 83,285,174NCBIRnor6.0
Rnor_5.0389,984,699 - 89,984,791UniSTSRnor5.0
RGSC_v3.4378,793,832 - 78,793,924UniSTSRGSC3.4
Celera379,546,658 - 79,546,750UniSTS
RH 3.4 Map3690.4UniSTS
Cytogenetic Map3q31UniSTS
9130020K17Rik  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2380,263,412 - 80,263,729 (+)MAPPERmRatBN7.2
mRatBN7.2380,263,556 - 80,263,729 (+)MAPPERmRatBN7.2
Rnor_6.0383,198,684 - 83,199,070NCBIRnor6.0
Rnor_6.0383,198,898 - 83,199,070NCBIRnor6.0
Rnor_5.0389,898,771 - 89,898,943UniSTSRnor5.0
Rnor_5.0389,898,557 - 89,898,943UniSTSRnor5.0
Cytogenetic Map3q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000014088   ⟹   ENSRNOP00000014088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl380,263,495 - 80,373,808 (-)Ensembl
Rnor_6.0 Ensembl383,198,821 - 83,306,781 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099588   ⟹   ENSRNOP00000090386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl380,263,495 - 80,373,808 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110475   ⟹   ENSRNOP00000077556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl380,300,477 - 80,373,812 (-)Ensembl
RefSeq Acc Id: NM_001107752   ⟹   NP_001101222
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,718,823 - 100,829,129 (-)NCBI
mRatBN7.2380,263,491 - 80,373,808 (-)NCBI
Rnor_6.0383,198,832 - 83,306,590 (-)NCBI
Rnor_5.0389,898,702 - 90,006,238 (-)NCBI
RGSC_v3.4378,736,486 - 78,815,334 (-)RGD
Celera379,490,280 - 79,568,165 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234582   ⟹   XP_006234644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,725,819 - 100,829,464 (-)NCBI
mRatBN7.2380,271,072 - 80,374,137 (-)NCBI
Rnor_6.0383,206,415 - 83,306,621 (-)NCBI
Rnor_5.0389,898,702 - 90,006,238 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591720   ⟹   XP_017447209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,718,820 - 100,829,464 (-)NCBI
mRatBN7.2380,263,488 - 80,373,849 (-)NCBI
Rnor_6.0383,198,829 - 83,306,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591721   ⟹   XP_017447210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,755,801 - 100,829,464 (-)NCBI
mRatBN7.2380,300,374 - 80,374,137 (-)NCBI
Rnor_6.0383,233,159 - 83,306,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104915   ⟹   XP_038960843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,755,801 - 100,829,464 (-)NCBI
mRatBN7.2380,300,374 - 80,374,137 (-)NCBI
RefSeq Acc Id: XM_063283678   ⟹   XP_063139748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,718,820 - 100,829,464 (-)NCBI
RefSeq Acc Id: XM_063283679   ⟹   XP_063139749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,718,820 - 100,829,464 (-)NCBI
RefSeq Acc Id: XR_005501866
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,723,464 - 100,829,464 (-)NCBI
mRatBN7.2380,268,132 - 80,374,137 (-)NCBI
RefSeq Acc Id: XR_005501867
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,723,464 - 100,829,464 (-)NCBI
mRatBN7.2380,268,134 - 80,374,137 (-)NCBI
RefSeq Acc Id: NP_001101222   ⟸   NM_001107752
- Peptide Label: precursor
- UniProtKB: F1MA48 (UniProtKB/Swiss-Prot),   B5DEL3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234644   ⟸   XM_006234582
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017447209   ⟸   XM_017591720
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GIU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447210   ⟸   XM_017591721
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZKB8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014088   ⟸   ENSRNOT00000014088
RefSeq Acc Id: XP_038960843   ⟸   XM_039104915
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000077556   ⟸   ENSRNOT00000110475
Ensembl Acc Id: ENSRNOP00000090386   ⟸   ENSRNOT00000099588
RefSeq Acc Id: XP_063139749   ⟸   XM_063283679
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139748   ⟸   XM_063283678
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEL3-F1-model_v2 AlphaFold B5DEL3 1-1198 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305410 AgrOrtholog
BioCyc Gene G2FUF-48653 BioCyc
Ensembl Genes ENSRNOG00000010495 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055000231 UniProtKB/Swiss-Prot
  ENSRNOG00060003010 UniProtKB/Swiss-Prot
  ENSRNOG00065025265 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000014088.8 UniProtKB/Swiss-Prot
  ENSRNOT00000099588.1 UniProtKB/TrEMBL
  ENSRNOT00000110475.1 UniProtKB/TrEMBL
  ENSRNOT00055000396 UniProtKB/Swiss-Prot
  ENSRNOT00060004958 UniProtKB/Swiss-Prot
  ENSRNOT00065043587 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314238 IMAGE-MGC_LOAD
InterPro TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TTC17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:311224 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109317 IMAGE-MGC_LOAD
NCBI Gene 311224 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TTC17 PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TPR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ttc17 PhenoGen
PROSITE TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000010495 RatGTEx
  ENSRNOG00055000231 RatGTEx
  ENSRNOG00060003010 RatGTEx
  ENSRNOG00065025265 RatGTEx
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZKB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIU8 ENTREZGENE, UniProtKB/TrEMBL
  A6HNK8_RAT UniProtKB/TrEMBL
  B5DEL3 ENTREZGENE
  F1MA48 ENTREZGENE
  Q562A7_RAT UniProtKB/TrEMBL
  TTC17_RAT UniProtKB/Swiss-Prot
UniProt Secondary F1MA48 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ttc17  tetratricopeptide repeat domain 17  Ttc17_predicted  tetratricopeptide repeat domain 17 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ttc17_predicted  tetratricopeptide repeat domain 17 (predicted)      Symbol and Name status set to approved 70820 APPROVED