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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Prostatic Neoplasms | | ISO | RGD:1312297 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29610475 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Prostatic Neoplasms | | ISO | RGD:1312297 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29610475 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:10466726 | PMID:10466727 | PMID:10639137 | PMID:11087757 | PMID:15173164 |
Ndst2 (Rattus norvegicus - Norway rat) |
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NDST2 (Homo sapiens - human) |
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Ndst2 (Mus musculus - house mouse) |
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Ndst2 (Chinchilla lanigera - long-tailed chinchilla) |
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NDST2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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NDST2 (Canis lupus familiaris - dog) |
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Ndst2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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NDST2 (Sus scrofa - pig) |
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NDST2 (Chlorocebus sabaeus - green monkey) |
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Ndst2 (Heterocephalus glaber - naked mole-rat) |
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Variants in Ndst2
8 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH134514 |
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AA875438 |
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GDB:642165 |
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Ndst2 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | |||||||||||||
Low | 3 | 24 | 35 | 19 | 19 | 19 | 1 | 3 | 67 | 27 | 40 | 11 | 1 |
Below cutoff | 19 | 22 | 22 | 22 | 7 | 8 | 7 | 8 | 1 | 7 |
RefSeq Transcripts | NM_001105740 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008770476 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008770477 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008770478 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008770479 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008770480 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039092946 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039092947 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005493682 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC127920 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH474061 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JACYVU010000255 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000035100 ⟹ ENSRNOP00000031692 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000078653 ⟹ ENSRNOP00000073946 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000088252 ⟹ ENSRNOP00000073437 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001105740 ⟹ NP_001099210 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008770477 ⟹ XP_008768699 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008770479 ⟹ XP_008768701 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039092946 ⟹ XP_038948874 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039092947 ⟹ XP_038948875 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_005493682 | ||||||||
RefSeq Status: | |||||||||
Type: | NON-CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001099210 | (Get FASTA) | NCBI Sequence Viewer |
XP_008768699 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008768701 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038948874 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038948875 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL86248 | (Get FASTA) | NCBI Sequence Viewer |
EDL86249 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001099210 ⟸ NM_001105740 |
- UniProtKB: | D3ZD62 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008768699 ⟸ XM_008770477 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_008768701 ⟸ XM_008770479 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000073437 ⟸ ENSRNOT00000088252 |
RefSeq Acc Id: | ENSRNOP00000073946 ⟸ ENSRNOT00000078653 |
RefSeq Acc Id: | XP_038948875 ⟸ XM_039092947 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038948874 ⟸ XM_039092946 |
- Peptide Label: | isoform X1 |
- UniProtKB: | D3ZD62 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000031692 ⟸ ENSRNOT00000035100 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZD62-F1-model_v2 | AlphaFold | D3ZD62 | 1-883 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13699559 | ||||||||
Promoter ID: | EPDNEW_R10080 | ||||||||
Type: | single initiation site | ||||||||
Name: | NEWGENE_1304700_2 | ||||||||
Description: | N-deacetylase/N-sulfotransferase 2 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_R10081 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 13699570 | ||||||||
Promoter ID: | EPDNEW_R10081 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | NEWGENE_1304700_1 | ||||||||
Description: | N-deacetylase/N-sulfotransferase 2 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_R10080 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1304700 | AgrOrtholog |
BioCyc Gene | G2FUF-14561 | BioCyc |
BioCyc Pathway | PWY-6558 [heparan sulfate biosynthesis] | BioCyc |
Ensembl Genes | ENSRNOG00000027171 | Ensembl |
ENSRNOG00000057755 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL | |
Ensembl Protein | ENSRNOP00000073946 | ENTREZGENE |
ENSRNOP00000073946.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000078653 | ENTREZGENE |
ENSRNOT00000078653.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.40.50.300 | UniProtKB/TrEMBL |
InterPro | Heparan_SO4_deacetylase | UniProtKB/TrEMBL |
NST/OST | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
Sulfotransferase_dom | UniProtKB/TrEMBL | |
KEGG Report | rno:114002 | UniProtKB/TrEMBL |
NCBI Gene | 114002 | ENTREZGENE |
PANTHER | BIFUNCTIONAL HEPARAN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE 2 | UniProtKB/TrEMBL |
PTHR10605 | UniProtKB/TrEMBL | |
Pfam | HSNSD | UniProtKB/TrEMBL |
Sulfotransfer_1 | UniProtKB/TrEMBL | |
PhenoGen | Ndst2 | PhenoGen |
Superfamily-SCOP | SSF52540 | UniProtKB/TrEMBL |
UniProt | D3ZD62 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2021-03-09 | Ndst2 | N-deacetylase and N-sulfotransferase 2 | NEWGENE_1304700 | N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 | Data Merged | 737654 | PROVISIONAL |
2016-07-21 | Ndst2 | N-deacetylase and N-sulfotransferase 2 | Ndst2 | N-deacetylase/N-sulfotransferase 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2016-02-03 | Ndst2 | N-deacetylase/N-sulfotransferase 2 | Ndst2 | N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2014-08-25 | NEWGENE_1304700 | N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2008-04-30 | Ndst2 | N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 | Ndst2_predicted | N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Ndst2_predicted | N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |