MTCYBP34 (MT-CYB pseudogene 34) - Rat Genome Database

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Gene: MTCYBP34 (MT-CYB pseudogene 34) Homo sapiens
Analyze
Symbol: MTCYBP34
Name: MT-CYB pseudogene 34
RGD ID: 12790902
HGNC Page HGNC:52302
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: mitochondrially encoded cytochrome b pseudogene 34
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,175,857 - 36,176,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,175,857 - 36,176,526 (+)EnsemblGRCh38hg38GRCh38
GRCh372236,571,905 - 36,572,574 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q12.3NCBI
T2T-CHM13v2.02236,636,042 - 36,636,711 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:158
Interacting mature miRNAs:163
Transcripts:ENST00000439552
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 20 13 1 25 1 44 4 34 7 17 18 36
Below cutoff 455 544 367 128 245 83 951 440 632 25 220 316 45 376 668 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000439552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2236,175,857 - 36,176,526 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTCYBP34 COSMIC
Ensembl Genes ENSG00000237129 Ensembl, ENTREZGENE
GTEx ENSG00000237129 GTEx
HGNC ID HGNC:52302 ENTREZGENE
Human Proteome Map MTCYBP34 Human Proteome Map
NCBI Gene MTCYBP34 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 MTCYBP34  MT-CYB pseudogene 34    mitochondrially encoded cytochrome b pseudogene 34  Symbol and/or name change 5135510 APPROVED