Advanced Search (OLGA)

Gene: Iws1 (interacts with SUPT6H, CTD assembly factor 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Iws1

Name:

interacts with SUPT6H, CTD assembly factor 1

RGD ID:

12734307

Description:

INVOLVED IN chromatin remodeling (inferred); poly(A)+ mRNA export from nucleus (inferred); regulation of mRNA export from nucleus (inferred); ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2W (ortholog); centronuclear myopathy 2 (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

IWS1, SUPT6H interacting protein, transcript variant X1; IWS1, SUPT6H interacting protein, transcript variant X2; IWS1, SUPT6H interacting protein, transcript variant X3; protein IWS1 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	97,813,621 - 97,851,019 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	43,766,663 - 43,808,333 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	43,766,699 - 43,805,919 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant thrombophilia due to protein C deficiency (ISO)

autosomal recessive limb-girdle muscular dystrophy type 2W (ISO)

centronuclear myopathy 2 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

poly(A)+ mRNA export from nucleus (IEA)

regulation of mRNA export from nucleus (IEA)

regulation of mRNA processing (IEA)

transcription elongation-coupled chromatin remodeling (IEA)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Iws1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	97,813,621 - 97,851,019 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	43,766,663 - 43,808,333 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	43,766,699 - 43,805,919 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IWS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	127,480,812 - 127,527,336 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	127,436,207 - 127,526,886 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	128,238,388 - 128,284,065 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	127,954,860 - 128,000,514 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	121,549,354 - 121,595,041 (-)	NCBI		Celera
Cytogenetic Map	2	q14.3	NCBI
HuRef	2	120,545,348 - 120,591,062 (-)	NCBI		HuRef
CHM1_1	2	128,242,935 - 128,288,602 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	127,916,064 - 127,962,573 (-)	NCBI		T2T-CHM13v2.0

Iws1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	32,200,377 - 32,237,384 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	32,200,794 - 32,237,381 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	32,067,326 - 32,104,331 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	32,067,741 - 32,104,328 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	32,227,388 - 32,263,985 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	32,210,774 - 32,240,318 (+)	NCBI		MGSCv36	mm8
Celera	18	32,548,980 - 32,585,919 (+)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI
cM Map	18	17.92	NCBI

Iws1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	23,969,352 - 24,011,560 (+)	NCBI		GRCr8
mRatBN7.2	18	23,695,496 - 23,737,363 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	23,695,425 - 23,736,172 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	23,823,597 - 23,861,406 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	24,579,583 - 24,617,407 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	23,918,579 - 23,956,389 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	24,849,508 - 24,891,339 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	24,849,545 - 24,880,317 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	24,564,090 - 24,606,101 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	24,489,571 - 24,524,125 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	24,494,575 - 24,550,538 (+)	NCBI
Celera	18	23,448,049 - 23,478,821 (+)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

Iws1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	3,021,764 - 3,063,128 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955459	3,021,320 - 3,063,363 (+)	NCBI	ChiLan1.0	ChiLan1.0

IWS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	48,118,820 - 48,221,507 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	48,133,798 - 48,200,382 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	32,750,718 - 32,810,360 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	128,132,447 - 128,192,258 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	128,146,087 - 128,192,258 (-)	Ensembl	panpan1.1		panPan2

IWS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	23,081,625 - 23,122,618 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	23,082,096 - 23,122,618 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	23,329,380 - 23,370,167 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	24,408,165 - 24,448,927 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	24,408,412 - 24,448,918 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	23,112,151 - 23,152,919 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	23,306,466 - 23,347,248 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	24,438,452 - 24,479,477 (+)	NCBI		UU_Cfam_GSD_1.0

IWS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	59,822,822 - 59,879,422 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	59,822,789 - 59,875,867 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

IWS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	2,688,690 - 2,747,457 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	2,689,031 - 2,734,828 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666061	20,024,617 - 20,070,770 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Iws1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	13,966,393 - 14,001,713 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	13,961,929 - 14,002,003 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005315875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013366558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013366565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005737920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000022238 ⟹ ENSSTOP00000022329

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	43,781,660 - 43,800,800 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000039277 ⟹ ENSSTOP00000026867

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	43,766,663 - 43,808,333 (+)	Ensembl

RefSeq Acc Id:

XM_005315875 ⟹ XP_005315932

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	97,813,621 - 97,851,018 (-)	NCBI
SpeTri2.0	NW_004936469	43,766,700 - 43,805,919 (+)	NCBI

Sequence:

show sequence

CATTCCTTTGAGGGTCGTGGGCAGACGCCATTTTGGTCTCAGAGGTGCTTCTGGGAAGTAGAGC
GCCGACCCGCACGCTTGCTGGCTTTCCCGGTACGGCCTTTTCTGCTGGGGCTACCAGGTCGAAG
CGTTCGTCTCTGCTGTTGCGGTTTTCATATTCTCCGAGCTCTCCGGTTAGGCCGGAGCCTCAGC
ACCGGGTCGCGCCATCGGAGGTCACACCACCAGGAAGGAGGTGACGGGGGCGGCGCGGGGCGCG
GACACTCCCCGCTGAGAGCCCGCCTGCCATGGACTCGGAATATTACAGTGGCGACCAGTCAGAT
GATGGTGGTGCTACCCCAGTGCAGGATGAACGGGATTCTGGATCTGATGGTGAGGATGATGTAA
ATGAGCAACACTCTGGATCAGATACTGGAAGCATAGAACGGCATTCAGAGAATGAACCTAGTGA
TCGAGAAGATGGCCTCACCAAGAGACATCATGTGACAGACTCTGAGAATGATGAGCCCTCACAT
CTTAATGCTAGTGACTCTGAAAGTGAGGAGCTTCACAGGCCAAAGGACAGTGATTCCGAATCTG
AAGAGCGGGCAGAGCCTCCTGCAAGTGATTCTGAAAATGAGGATGTTAATCAGCATGGGAGTGA
CTCTGAGAGTGAGGAGACCAGGAAATTACCTGGGAGTGACTCTGAAAACGAGGAGCTGCTTAAT
GGACATGCAAGTGACTCTGAAAACGAAGACGTTAGAAAGCATGCTGCCAGTGATTCTGAGATTG
AAGAGCTCCAAAAGAGTCCTTCCAGTGACTCTGAAACCGAGGATACTCTGAAACCTCAAATCAG
TGACTCTGAGAGTGAGGAACCACCAAGGCACCAGGCCAGTGACTCAGAAAATGAGGAGCCTCCT
AAACCACAAATGAGTGATTCGGAAAGCGAGGAGCTTCCTAAACCTCGAATCAGTGACTCGGAAA
GTGAGGATCCCCCAAGGCACCAGGCCAGTGACTCTGAAAATGAAGAGCTCCCCAAACCTCGTAT
CAGTGACTCTGAAAGCGAAGACCCCCCAAGACACCGGGCCAGTGACTCAGATAATGAAGAACTC
CCCAAACCCCGAATTAGTGACTCAGAGAGTGAGGAACCCCCAAGACACCAGGCCAGCGACTCAG
ATAATGAAGAACTCCCCAAACCCCGAATTAGTGACTCAGAAAGTGAGGATCCCCCAAGGCATCA
GGCCAGTGATTCTGAAAATGAGGAGCTCCCCAAACCCCGAGTCAGTGACTCTGAGAGTGAGGAG
CCTCAGAAAGGACCTGCCAGTGATTCAGAAGCGGAGGATGCCTCCAGACCCAAACAGAAGCCAG
AGTCTGATGATGACAGCGATGGGGAAAATAAGGGGGGGAATCCAGAAATGCAGAATGACTTTCA
TTCAGAGAGCCATGTTGACAGAAAAAGATTTCACAGCTCTGAGAGTGAGGAGGAAGAACCCAAA
AGGCAAAAAATGGATAGTGATGAAGATGAAGAAAAAGATGGTGAGGAGGAAAAAGTAGCAAAAC
GGAAAGCTGCAGTGCTTTCTGATAGTGAAGATGAAGAAAAAGCATCAGCAAAGAAAAGTCGTGT
TGTTTCTGATGCCGATGACTCTGACAGTGATGTTATATCAGATAAGTCAAGCAAAAGAGAGAAG
ACTGTAGCATCTGACAGTGAAGAAGAAGTGGGGAAAGAATTATCTGATAAGAAAAATGAAGAGA
AAGATCTATTTGGGAGTGATAGTGAGTCAGGCAATGAAGAAGAAAATCTTATTGCAGATATATT
TGGAGAATCTGGTGATGAAGAGGAAGAAGAATTTACAGGTTTTAATCAGGAGGATTTGGAAGAA
GAAAAAGGTGAAACCCAGGTGAAAGAAGCAGAAGATTCAGATTCTGATGATAACATAAAAAGAG
GAAAGCATATGGACTTCCTATCAGATTTTGAGATGATGTTGCAGAGGAAAAAGAGCATGAGTGG
CAAGCGCAGACGTAATCGAGATGGTGGCACCTTTATTAGTGACGCAGATGACGTTGTGAGTGCC
ATGATTGTCAAAATGAATGAGGCTGCTGAGGAAGATAGACAGTTGAACAATCAAAAAAAGCCAG
CACTTAAGAAATTAACTTTGTTGCCTACTGTGGTTATGCACCTTAAGAAGCAAGACCTTAAAGA
AACGTTTATTGATAGTGGTGTGATGTCTGCCATCAAAGAATGGCTATCACCTCTGCCAGATAAG
AGTTTGCCCGCACTAAAGATTCGGGAGGAGCTGTTGAAGATTTTGCAAGAGCTACCTAGTGTGA
GCCAGGAGACCCTGAAGCATAGTGGGATTGGACGAGCAGTGATGTATCTCTATAAACACCCCAA
GGAATCAAGGTCCAACAAGGACATGGCAGGGAAATTAATCAATGAATGGTCTCGGCCTATATTT
GGCCTTACCTCAAACTATAAAGGAATGACAAGAGAAGAAAGGGAGCAAAGAGATCTAGAACAAA
TGCCTCAACGACGAAGAATGAACAGCACTGGTGGTCAGACACCCCGAAGAGACCTGGAAAAGGT
GCTAACAGGAGAGGAGAAGGCTCTTAGACCTGGAGATCCTGGATTCTGTGCCCGTGCAAGGGTC
CCAATGCCCTCAAACAAGGACTATGTCGTCAGGCCCAAGTGGAACGTGGAAATGGAGTCATCCA
GGTTTCAGGCAACTTCCAAGAAAGGTATCAGTCGACTGGATAAACAGATGAGAAAGTTCACAGA
TATCAGGAAAAAAAGCAGATCTGCACACGCTGTGAAAATCAGCATAGAGGGCAATAAAATGCCA
TTGTGACCTTGCCTGGGATGTGTCTTCCATCTCTGCTTTAAGAAATGCACAATGGACTCTTTGG
AGAAAGAAGATATTTTAAAATTTTTTTAGTGTGTCTGTAAATGGTTTGGCTTGTATTAAATGTT
GTCATAGGATTCACATTTCTCTCAGTTGTATTTAAAACTGTTGTGTACTTTGTACAGAAGAATA
CTAGTCATACTTCTAAAAATTTTAAATAATAAAATTTCATTCTGGTTTTGGGGGGCTGTTTCTT
TATTGTCTTAGAAGATGCATTCTCTGTGGGATCAAAAATTGATCCCTGTTGAGTGAAAAAAATC
TTAAGATACACCTTCAAAGTTCAGTCCTATCTGACTATGGTATGAGGAATTTGTCTTGTCTTTG
TCCCTAGTTCCTGACAAGGAATGTCTCAAACCCTTGGGTTTCCTGGGTGATGAAATTGTCTTAT
GCTGATGGAGTGATTCCTGGTGGGCCCTAGATAGTCTTAGGGGAGAGGATAGGTTTAGTCATGT
GACCTATTTGATTTAATCATCCACACCTGCATAGTGAGGTCCATTAAGAGCTCTGGACACCTAA
GCAAGCTTAGTAGAGTTTCCTGGTGGGTGAACTCACTGATGTGCCAGAAGAATGGGGCACAGAA
TCTGCATTTCCTTCTTAAACCCCCTTCTGTAGATCTACATTTGACTAACAGGTCTAACATTCCT
TATAACAAAACTAACCACAAGTATGGTGCTCTATAGTATTAGTACCTTCCTTAGTTCTGTGAGA
CATCTTAGCAAACTCTTGACAAGAGATTCATGAGAACCCCAAATTTGTAAACATTCAATCCAAA
GTATCAGTGGTCTGGAGAACTCAATGTGGCCAGCACCTATCAGAATTGAAATACAGTACCCCAG
TTGGAATTGTACTATAATTACTATAATACCAACAATATTTTATGTCTTAGTATTAATCATTTTA
TATTAATTATTTTCCTCCAAGAGTAGGGAATTACAGTAGAAAAATTTCAGGAAGTCGTTAATGA
TTATCTAGTTATTTTAGTAGTCTCTACAGACTTAATTATGAGAGCTCTGATGGGTCAAGCTGAG
TAAATCCAAGAAAATTTTAATTAGCCTTGGTTTTCATAAAGACCTTTGAGTGGTCTACATAACA
TGAAGTATATGCACTGAAACACAAGAACCTCTCAGAACCTATCTTCATTTAAGTTGCAACAAAT
TCAGAAGCACAAGATTGTAAAAAATTAAGTATAAGTATATATTAGAAGGTAATGGCTAACCACT
AGATAGAGACAAAACAACCTTTCAGCTGTGTTTTACTTTTTATTTACCCTCAAAAATGTTTCCA
GTGCCTTCCAAATGCTGACAATTAAGACAGTTGTAAACAAGAAAAACAAGTTGTTAAAGATTTT
CAAGTTATTAACATTTTGGCCTTTATTATAGTAAGCTCCAGTTATCTGAAAATGTCACATGGAA
GGTAAAAGTGATGGTACCAGGTAATAAAGTGATAATCACACCTAGGGAATTAAAAATGATGAGA
AATTCTCTTATACTAAGTTTAAAGAAAAAAATTTAACTAGTTTCTGTATAAATGATCTGGTGTA
TGGCTTATTTGGCGGCATCTCAAACCTAGTCCACCAGAATAACTTTTTTTCCCCTGATTTAAAA
ATATTTCCAATTTAGTAAAGTTAACTCCATGTACCCTTTATTGATACTTGCCACTTTGCCATAC
TTAACTTTGTCACCTTATATGTACATACTATTGCTTTTTGCAGGTGTGTGTGTCTAGCTTGTTG
TCACCTCGCCTCTGGAGCCCCAAATACTTAAGCATTTTCTGACAAAAACATGGATTTACCCAGT
TAATTTTTATCACTTGATTAGGGTGATTCAAAGTTACTTAGTCTTTCAGTTTTTTTGTGATATT
TTGTAATTGTGGTAAAAGATACATAACATGAAGTTTACCATGTTAAGTGCACATCTTTTAAGTG
CACAGTTTAGTGGCATTGAGTGCACTTCATTGTTGGGCACCCATCTCCAGAAATCTTTTTTTTT
TTTTTTGAGAATTT

hide sequence

RefSeq Acc Id:

XM_013366558 ⟹ XP_013222012

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	97,813,852 - 97,851,018 (-)	NCBI
SpeTri2.0	NW_004936469	43,766,700 - 43,804,098 (+)	NCBI

Sequence:

show sequence

CATTCCTTTGAGGGTCGTGGGCAGACGCCATTTTGGTCTCAGAGGTGCTTCTGGGAAGTAGAGC
GCCGACCCGCACGCTTGCTGGCTTTCCCGGTACGGCCTTTTCTGCTGGGGCTACCAGGTCGAAG
CGTTCGTCTCTGCTGTTGCGGTTTTCATATTCTCCGAGCTCTCCGGTTAGGCCGGAGCCTCAGC
ACCGGGTCGCGCCATCGGAGGTCACACCACCAGGAAGGAGGTGACGGGGGCGGCGCGGGGCGCG
GACACTCCCCGCTGAGAGCCCGCCTGCCATGGACTCGGAATATTACAGTGGCGACCAGTCAGAT
GATGGTGGTGCTACCCCAGTGCAGGATGAACGGGATTCTGGATCTGATGGTGAGGATGATGTAA
ATGAGCAACACTCTGGATCAGATACTGGAAGCATAGAACGGCATTCAGAGAATGAACCTAGTGA
TCGAGAAGATGGCCTCACCAAGAGACATCATGTGACAGACTCTGAGAATGATGAGCCCTCACAT
CTTAATGCTAGTGACTCTGAAAGTGAGGAGCTTCACAGGCCAAAGGACAGTGATTCCGAATCTG
AAGAGCGGGCAGAGCCTCCTGCAAGTGATTCTGAAAATGAGGATGTTAATCAGCATGGGAGTGA
CTCTGAGAGTGAGGAGACCAGGAAATTACCTGGGAGTGACTCTGAAAACGAGGAGCTGCTTAAT
GGACATGCAAGTGACTCTGAAAACGAAGACGTTAGAAAGCATGCTGCCAGTGATTCTGAGATTG
AAGAGCTCCAAAAGAGTCCTTCCAGTGACTCTGAAACCGAGGATACTCTGAAACCTCAAATCAG
TGACTCTGAGAGTGAGGAACCACCAAGGCACCAGGCCAGTGACTCAGAAAATGAGGAGCCTCCT
AAACCACAAATGAGTGATTCGGAAAGCGAGGAGCTTCCTAAACCTCGAATCAGTGACTCGGAAA
GTGAGGATCCCCCAAGGCACCAGGCCAGTGACTCTGAAAATGAAGAGCTCCCCAAACCTCGTAT
CAGTGACTCTGAAAGCGAAGACCCCCCAAGACACCGGGCCAGTGACTCAGATAATGAAGAACTC
CCCAAACCCCGAATTAGTGACTCAGAGAGTGAGGAACCCCCAAGACACCAGGCCAGCGACTCAG
ATAATGAAGAACTCCCCAAACCCCGAATTAGTGACTCAGAAAGTGAGGATCCCCCAAGGCATCA
GGCCAGTGATTCTGAAAATGAGGAGCTCCCCAAACCCCGAGTCAGTGACTCTGAGAGTGAGGAG
CCTCAGAAAGGACCTGCCAGTGATTCAGAAGCGGAGGATGCCTCCAGACCCAAACAGAAGCCAG
AGTCTGATGATGACAGCGATGGGGAAAATAAGGGGGGGAATCCAGAAATGCAGAATGACTTTCA
TTCAGAGAGCCATGTTGACAGAAAAAGATTTCACAGCTCTGAGAGTGAGGAGGAAGAACCCAAA
AGGCAAAAAATGGATAGTGATGAAGATGAAGAAAAAGATGGTGAGGAGGAAAAAGTAGCAAAAC
GGAAAGCTGCAGTGCTTTCTGATAGTGAAGATGAAGAAAAAGCATCAAAGAAAAGTCGTGTTGT
TTCTGATGCCGATGACTCTGACAGTGATGTTATATCAGATAAGTCAAGCAAAAGAGAGAAGACT
GTAGCATCTGACAGTGAAGAAGAAGTGGGGAAAGAATTATCTGATAAGAAAAATGAAGAGAAAG
ATCTATTTGGGAGTGATAGTGAGTCAGGCAATGAAGAAGAAAATCTTATTGCAGATATATTTGG
AGAATCTGGTGATGAAGAGGAAGAAGAATTTACAGGTTTTAATCAGGAGGATTTGGAAGAAGAA
AAAGGTGAAACCCAGGTGAAAGAAGCAGAAGATTCAGATTCTGATGATAACATAAAAAGAGGAA
AGCATATGGACTTCCTATCAGATTTTGAGATGATGTTGCAGAGGAAAAAGAGCATGAGTGGCAA
GCGCAGACGTAATCGAGATGGTGGCACCTTTATTAGTGACGCAGATGACGTTGTGAGTGCCATG
ATTGTCAAAATGAATGAGGCTGCTGAGGAAGATAGACAGTTGAACAATCAAAAAAAGCCAGCAC
TTAAGAAATTAACTTTGTTGCCTACTGTGGTTATGCACCTTAAGAAGCAAGACCTTAAAGAAAC
GTTTATTGATAGTGGTGTGATGTCTGCCATCAAAGAATGGCTATCACCTCTGCCAGATAAGAGT
TTGCCCGCACTAAAGATTCGGGAGGAGCTGTTGAAGATTTTGCAAGAGCTACCTAGTGTGAGCC
AGGAGACCCTGAAGCATAGTGGGATTGGACGAGCAGTGATGTATCTCTATAAACACCCCAAGGA
ATCAAGGTCCAACAAGGACATGGCAGGGAAATTAATCAATGAATGGTCTCGGCCTATATTTGGC
CTTACCTCAAACTATAAAGGAATGACAAGAGAAGAAAGGGAGCAAAGAGATCTAGAACAAATGC
CTCAACGACGAAGAATGAACAGCACTGGTGGTCAGACACCCCGAAGAGACCTGGAAAAGGTGCT
AACAGGAGAGGAGAAGGCTCTTAGACCTGGAGATCCTGGATTCTGTGCCCGTGCAAGGGTCCCA
ATGCCCTCAAACAAGGACTATGTCGTCAGGCCCAAGTGGAACGTGGAAATGGAGTCATCCAGGT
TTCAGGCAACTTCCAAGAAAGGTATCAGTCGACTGGATAAACAGATGAGAAAGTTCACAGATAT
CAGGAAAAAAAGCAGATCTGCACACGCTGTGAAAATCAGCATAGAGGGCAATAAAATGCCATTG
TGACCTTGCCTGGGATGTGTCTTCCATCTCTGCTTTAAGAAATGCACAATGGACTCTTTGGAGA
AAGAAGATATTTTAAAATTTTTTTAGTGTGTCTGTAAATGGTTTGGCTTGTATTAAATGTTGTC
ATAGGATTCACATTTCTCTCAGTTGTATTTAAAACTGTTGTGTACTTTGTACAGAAGAATACTA
GTCATACTTCTAAAAATTTTAAATAATAAAATTTCATTCTGGTTTT

hide sequence

RefSeq Acc Id:

XR_005737920

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	97,813,958 - 97,851,019 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005315932	(Get FASTA)	NCBI Sequence Viewer
	XP_013222012	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022329.2
	ENSSTOP00000026867.1
GenBank Protein	KAG3274320	(Get FASTA)	NCBI Sequence Viewer
	KAG3274321	(Get FASTA)	NCBI Sequence Viewer
	KAG3274322	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013222012 ⟸ XM_013366558

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSIERHSENEPSDREDGLTKRH
HVTDSENDEPSHLNASDSESEELHRPKDSDSESEERAEPPASDSENEDVNQHGSDSESEETRKL
PGSDSENEELLNGHASDSENEDVRKHAASDSEIEELQKSPSSDSETEDTLKPQISDSESEEPPR
HQASDSENEEPPKPQMSDSESEELPKPRISDSESEDPPRHQASDSENEELPKPRISDSESEDPP
RHRASDSDNEELPKPRISDSESEEPPRHQASDSDNEELPKPRISDSESEDPPRHQASDSENEEL
PKPRVSDSESEEPQKGPASDSEAEDASRPKQKPESDDDSDGENKGGNPEMQNDFHSESHVDRKR
FHSSESEEEEPKRQKMDSDEDEEKDGEEEKVAKRKAAVLSDSEDEEKASKKSRVVSDADDSDSD
VISDKSSKREKTVASDSEEEVGKELSDKKNEEKDLFGSDSESGNEEENLIADIFGESGDEEEEE
FTGFNQEDLEEEKGETQVKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMSGKRRRNRDGGT
FISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSA
IKEWLSPLPDKSLPALKIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAG
KLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQRRRMNSTGGQTPRRDLEKVLTGEEKALRP
GDPGFCARARVPMPSNKDYVVRPKWNVEMESSRFQATSKKGISRLDKQMRKFTDIRKKSRSAHA
VKISIEGNKMPL

hide sequence

RefSeq Acc Id:	XP_005315932 ⟸ XM_005315875
- Peptide Label:	isoform X1
- UniProtKB:	A0A287CZX7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSIERHSENEPSDREDGLTKRH HVTDSENDEPSHLNASDSESEELHRPKDSDSESEERAEPPASDSENEDVNQHGSDSESEETRKL PGSDSENEELLNGHASDSENEDVRKHAASDSEIEELQKSPSSDSETEDTLKPQISDSESEEPPR HQASDSENEEPPKPQMSDSESEELPKPRISDSESEDPPRHQASDSENEELPKPRISDSESEDPP RHRASDSDNEELPKPRISDSESEEPPRHQASDSDNEELPKPRISDSESEDPPRHQASDSENEEL PKPRVSDSESEEPQKGPASDSEAEDASRPKQKPESDDDSDGENKGGNPEMQNDFHSESHVDRKR FHSSESEEEEPKRQKMDSDEDEEKDGEEEKVAKRKAAVLSDSEDEEKASAKKSRVVSDADDSDS DVISDKSSKREKTVASDSEEEVGKELSDKKNEEKDLFGSDSESGNEEENLIADIFGESGDEEEE EFTGFNQEDLEEEKGETQVKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMSGKRRRNRDGG TFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMS AIKEWLSPLPDKSLPALKIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMA GKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQRRRMNSTGGQTPRRDLEKVLTGEEKALR PGDPGFCARARVPMPSNKDYVVRPKWNVEMESSRFQATSKKGISRLDKQMRKFTDIRKKSRSAH AVKISIEGNKMPL hide sequence

Ensembl Acc Id:

ENSSTOP00000022329 ⟸ ENSSTOT00000022238

Ensembl Acc Id:

ENSSTOP00000026867 ⟸ ENSSTOT00000039277

Protein Domains

TFIIS N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000028209	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000022238.2	UniProtKB/TrEMBL
	ENSSTOT00000039277.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.930.10	UniProtKB/TrEMBL
InterPro	RNAPII_TF_IWS1	UniProtKB/TrEMBL
	TFIIS/LEDGF_dom_sf	UniProtKB/TrEMBL
	TFIIS_N	UniProtKB/TrEMBL
NCBI Gene	Iws1	ENTREZGENE
PANTHER	PROTEIN IWS1 HOMOLOG	UniProtKB/TrEMBL
	PROTEIN IWS1 HOMOLOG	UniProtKB/TrEMBL
Pfam	Med26	UniProtKB/TrEMBL
PROSITE	TFIIS_N	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47676	UniProtKB/TrEMBL
UniProt	A0A287CZX7	ENTREZGENE, UniProtKB/TrEMBL
	I3ND82_ICTTR	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-11-27	Iws1	interacts with SUPT6H, CTD assembly factor 1	Iws1	IWS1, SUPT6H interacting protein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar