Cep72 (centrosomal protein 72) - Rat Genome Database

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Gene: Cep72 (centrosomal protein 72) Ictidomys tridecemlineatus
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Symbol: Cep72
Name: centrosomal protein 72
RGD ID: 12730096
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN centriole replication (inferred); gamma-tubulin complex localization (inferred); regulation of protein localization to centrosome (inferred); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); dopamine transporter deficiency syndrome (ortholog); interstitial lung disease 2 (ortholog); FOUND IN centriolar satellite (inferred); centrosome (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein of 72 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,725,348 - 244,783,725 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815888,701 - 912,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815886,633 - 918,445 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cep72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,725,348 - 244,783,725 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815888,701 - 912,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815886,633 - 918,445 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385612,340 - 676,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5612,340 - 667,168 (+)EnsemblGRCh38hg38GRCh38
GRCh375612,455 - 668,859 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365665,405 - 706,668 (+)NCBINCBI36Build 36hg18NCBI36
Celera5708,943 - 749,747 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5597,055 - 637,245 (+)NCBIHuRef
CHM1_15609,681 - 649,065 (+)NCBICHM1_1
T2T-CHM13v2.05610,390 - 666,525 (+)NCBIT2T-CHM13v2.0
Cep72
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,184,351 - 74,210,439 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,184,619 - 74,210,418 (-)EnsemblGRCm39 Ensembl
GRCm381374,036,495 - 74,062,319 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,036,500 - 74,062,299 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,173,943 - 74,199,733 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,503,837 - 74,528,276 (-)NCBIMGSCv36mm8
Celera1376,366,283 - 76,391,972 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
Cep72
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,053,884 - 31,083,863 (+)NCBIGRCr8
mRatBN7.2129,225,312 - 29,255,294 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,225,361 - 29,255,271 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,027,020 - 29,056,963 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,026,875 - 35,056,816 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,227,635 - 29,257,577 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,834,977 - 31,864,938 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,835,000 - 31,864,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,259,539 - 33,289,662 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,031,815 - 30,061,725 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera127,876,610 - 27,906,505 (+)NCBICelera
Cytogenetic Map1p11NCBI
Cep72
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504305,161 - 335,477 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955504305,181 - 335,791 (+)NCBIChiLan1.0ChiLan1.0
CEP72
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24832,069 - 885,119 (+)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl5733,647 - 772,323 (+)Ensemblpanpan1.1panPan2
CEP72
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,639,794 - 11,684,041 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,649,221 - 11,685,767 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,141,869 - 16,195,347 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,532,589 - 11,586,247 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,540,282 - 11,586,229 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,583,276 - 11,636,989 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,563,186 - 11,617,544 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,773,889 - 11,827,585 (-)NCBIUU_Cfam_GSD_1.0
CEP72
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,559,046 - 79,591,249 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,559,046 - 79,591,262 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CEP72
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14490,307 - 525,435 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4490,387 - 528,276 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606427,621,644 - 27,657,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep72
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624751332,428 - 352,664 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000009766   ⟹   ENSSTOP00000008759
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936815888,701 - 912,384 (-)Ensembl
RefSeq Acc Id: XM_040273394   ⟹   XP_040129328
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213244,725,348 - 244,783,725 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040129328 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008759.3
GenBank Protein KAG3266936 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040129328   ⟸   XM_040273394
- UniProtKB: I3ME65 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000008759   ⟸   ENSSTOT00000009766
Protein Domains
U2A'/phosphoprotein 32 family A C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009770 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009766.3 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  U2A'_phosphoprotein32A_C UniProtKB/TrEMBL
NCBI Gene Cep72 ENTREZGENE
PANTHER HEAT SHOCK REGULATED 2 UniProtKB/TrEMBL
  PTHR23311:SF7 UniProtKB/TrEMBL
Pfam LRR_9 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRRcap UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt I3ME65 ENTREZGENE, UniProtKB/TrEMBL