Zbtb8os (zinc finger and BTB domain containing 8 opposite strand) - Rat Genome Database

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Gene: Zbtb8os (zinc finger and BTB domain containing 8 opposite strand) Ictidomys tridecemlineatus
Analyze
Symbol: Zbtb8os
Name: zinc finger and BTB domain containing 8 opposite strand
RGD ID: 12721193
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN tRNA processing (inferred); tRNA splicing, via endonucleolytic cleavage and ligation (inferred); ASSOCIATED WITH pre-malignant neoplasm (ortholog); FOUND IN tRNA-splicing ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain containing 8 opposite strand, transcript variant X1; zinc finger and BTB domain containing 8 opposite strand, transcript variant X2; zinc finger and BTB domain containing 8 opposite strand, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505849,752,442 - 49,768,006 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647415,573,486 - 15,592,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647415,577,023 - 15,592,891 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Zbtb8os
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505849,752,442 - 49,768,006 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647415,573,486 - 15,592,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647415,577,023 - 15,592,891 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB8OS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38132,620,820 - 32,650,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl132,600,172 - 32,650,903 (-)EnsemblGRCh38hg38GRCh38
GRCh37133,086,421 - 33,116,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36132,859,892 - 32,888,772 (-)NCBINCBI36Build 36hg18NCBI36
Celera131,355,962 - 31,384,864 (-)NCBICelera
Cytogenetic Map1p35.1NCBI
HuRef131,202,105 - 31,231,370 (-)NCBIHuRef
CHM1_1133,202,694 - 33,231,598 (-)NCBICHM1_1
T2T-CHM13v2.0132,479,596 - 32,510,712 (-)NCBIT2T-CHM13v2.0
Zbtb8os
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394129,229,325 - 129,243,664 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4129,229,488 - 129,248,340 (+)EnsemblGRCm39 Ensembl
GRCm384129,335,532 - 129,349,871 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,335,695 - 129,354,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv374129,013,270 - 129,024,273 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364128,838,330 - 128,849,333 (+)NCBIMGSCv36mm8
Celera4127,676,765 - 127,687,761 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.26NCBI
Zbtb8os
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85146,959,939 - 146,971,389 (+)NCBIGRCr8
mRatBN7.25141,675,595 - 141,687,148 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5141,675,857 - 141,688,660 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5144,374,813 - 144,386,278 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05146,144,631 - 146,156,094 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05146,143,243 - 146,154,806 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05147,535,584 - 147,547,252 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,535,525 - 147,547,047 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05151,256,894 - 151,268,651 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45148,492,643 - 148,504,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5140,154,326 - 140,165,545 (+)NCBICelera
Cytogenetic Map5q36NCBI
Zbtb8os
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545210,944,281 - 10,955,631 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,944,281 - 10,955,250 (-)NCBIChiLan1.0ChiLan1.0
ZBTB8OS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21194,168,698 - 194,198,922 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11193,291,359 - 193,321,141 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,913,890 - 31,944,132 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1133,081,560 - 33,111,089 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl133,060,314 - 33,111,089 (-)Ensemblpanpan1.1panPan2
ZBTB8OS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,660,419 - 68,684,336 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,660,975 - 68,682,440 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,243,216 - 65,266,585 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,228,351 - 69,251,750 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,228,977 - 69,249,629 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,065,285 - 66,088,623 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,060,839 - 67,084,155 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,054,541 - 68,077,887 (+)NCBIUU_Cfam_GSD_1.0
ZBTB8OS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,970,977 - 88,987,004 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,970,973 - 88,986,999 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2683,010,429 - 83,019,536 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB8OS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120100,221,153 - 100,252,884 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20100,220,958 - 100,254,697 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603316,435,941 - 16,468,769 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb8os
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476415,785,203 - 15,799,952 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000012001   ⟹   ENSSTOP00000010768
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647415,577,518 - 15,591,477 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000032028   ⟹   ENSSTOP00000028889
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647415,573,486 - 15,592,070 (-)Ensembl
RefSeq Acc Id: XM_005317758   ⟹   XP_005317815
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,752,442 - 49,766,972 (-)NCBI
SpeTri2.0NW_00493647415,577,023 - 15,591,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013363697   ⟹   XP_013219151
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,752,442 - 49,768,006 (-)NCBI
SpeTri2.0NW_00493647415,577,023 - 15,592,891 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013363699   ⟹   XP_013219153
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,752,442 - 49,767,220 (-)NCBI
SpeTri2.0NW_00493647415,577,023 - 15,591,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040288316   ⟹   XP_040144250
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,752,442 - 49,767,001 (-)NCBI
RefSeq Acc Id: XM_040288317   ⟹   XP_040144251
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,752,442 - 49,767,326 (-)NCBI
RefSeq Acc Id: XM_040288318   ⟹   XP_040144252
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,752,442 - 49,767,033 (-)NCBI
RefSeq Acc Id: XP_013219151   ⟸   XM_013363697
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013219153   ⟸   XM_013363699
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005317815   ⟸   XM_005317758
- Peptide Label: isoform X1
- UniProtKB: A0A287D5R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144251   ⟸   XM_040288317
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040144252   ⟸   XM_040288318
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040144250   ⟸   XM_040288316
- Peptide Label: isoform X2
- UniProtKB: I3MID4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000028889   ⟸   ENSSTOT00000032028
Ensembl Acc Id: ENSSTOP00000010768   ⟸   ENSSTOT00000012001
Protein Domains
Archease


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012005 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012001.3 UniProtKB/TrEMBL
  ENSSTOT00000032028.1 UniProtKB/TrEMBL
Gene3D-CATH 3.55.10.10 UniProtKB/TrEMBL
InterPro Archease UniProtKB/TrEMBL
  Archease_dom UniProtKB/TrEMBL
  Archease_dom_sf UniProtKB/TrEMBL
NCBI Gene Zbtb8os ENTREZGENE
PANTHER PROTEIN ARCHEASE UniProtKB/TrEMBL
  PTHR12682 UniProtKB/TrEMBL
Pfam Archease UniProtKB/TrEMBL
Superfamily-SCOP SSF69819 UniProtKB/TrEMBL
UniProt A0A287D5R6 ENTREZGENE, UniProtKB/TrEMBL
  I3MID4 ENTREZGENE, UniProtKB/TrEMBL