Timmdc1 (translocase of inner mitochondrial membrane domain containing 1) - Rat Genome Database

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Gene: Timmdc1 (translocase of inner mitochondrial membrane domain containing 1) Ictidomys tridecemlineatus
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Symbol: Timmdc1
Name: translocase of inner mitochondrial membrane domain containing 1
RGD ID: 12718662
Description: ASSOCIATED WITH Leigh disease (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); nuclear type mitochondrial complex I deficiency 31 (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: complex I assembly factor TIMMDC1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,069,078 - 131,089,169 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365366,432,802 - 6,451,485 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timmdc1SquirrelLeigh disease  ISORGD:13513188554872ClinVar Annotator: match by term: Leigh syndromeClinVarPMID:25741868
Timmdc1Squirrelnuclear type mitochondrial complex I deficiency 1  ISORGD:13513188554872ClinVar Annotator: match by term: Mitochondrial complex I deficiency, nuclear type 1ClinVarPMID:25741868|PMID:28492532
Timmdc1Squirrelnuclear type mitochondrial complex I deficiency 31  ISORGD:13513188554872ClinVar Annotator: match by term: MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 31 | ClinVar Annotator: more ...ClinVarPMID:25741868|PMID:28492532|PMID:28604674|PMID:33278652|PMID:33586140|PMID:35091571|PMID:36349561
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timmdc1Squirrelnuclear type mitochondrial complex I deficiency 31  ISORGD:13513187240710 OMIM 


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timmdc1Squirrelmitochondrion located_inISORGD:13513189068941 HPAGO_REF:0000052|GO_REF:0000054
Timmdc1Squirrelmitochondrion located_inISORGD:13513189068941 PMID:34800366FlyBasePMID:34800366
Timmdc1Squirrelnucleoplasm located_inISORGD:13513189068941 HPAGO_REF:0000052

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timmdc1Squirrelprotein binding enablesISOUniProtKB:Q9NX149068941 PMID:33961781IntActPMID:33961781
Timmdc1Squirrelprotein binding enablesISOUniProtKB:Q969F09068941 PMID:25416956, PMID:31515488IntActPMID:25416956|PMID:31515488
Timmdc1Squirrelprotein binding enablesISOUniProtKB:Q9BUB79068941 PMID:33753518UniProtPMID:33753518
Timmdc1Squirrelprotein binding enablesISOUniProtKB:O00767|UniProtKB:O43752|UniProtKB:O75063|UniProtKB:O75787|UniProtKB:O75920|UniProtKB:O95070|UniProtKB:O95236-2|UniProtKB:O95674|UniProtKB:P01563|UniProtKB:P13236|UniProtKB:P18031|UniProtKB:P29033|UniProtKB:P50542-3|UniProtKB:P51572|UniProtKB:P55056|UniProtKB:Q07326|UniProtKB:Q14802-3|UniProtKB:Q16849-3|UniProtKB:Q5BVD1|UniProtKB:Q5SR56|UniProtKB:Q6ICL7|UniProtKB:Q6N075|UniProtKB:Q6PI78|UniProtKB:Q6UW88-2|UniProtKB:Q6UWT4|UniProtKB:Q7Z5P4|UniProtKB:Q7Z5S9|UniProtKB:Q86W74-2|UniProtKB:Q86WB7-2|UniProtKB:Q86Y82|UniProtKB:Q8N2M4|UniProtKB:Q8N357|UniProtKB:Q8N511|UniProtKB:Q8N682|UniProtKB:Q8N6R1|UniProtKB:Q8N6S5|UniProtKB:Q8N912|UniProtKB:Q8TAC9|UniProtKB:Q8TAF8|UniProtKB:Q8TAZ6|UniProtKB:Q8TD06|UniProtKB:Q8TDT2|UniProtKB:Q8TDV0|UniProtKB:Q8TED1|UniProtKB:Q8WVX3-2|UniProtKB:Q8WW34-2|UniProtKB:Q92982|UniProtKB:Q969K7|UniProtKB:Q969S6|UniProtKB:Q96BA8|UniProtKB:Q96HP8|UniProtKB:Q96JF0-2|UniProtKB:Q96KR6|UniProtKB:Q96PD2-2|UniProtKB:Q99706|UniProtKB:Q9HCS2|UniProtKB:Q9NR28|UniProtKB:Q9NUH8|UniProtKB:Q9NX14|UniProtKB:Q9NX47|UniProtKB:Q9NYZ1|UniProtKB:Q9Y225-2|UniProtKB:Q9Y5489068941 PMID:32296183IntActPMID:32296183

PMID:30032202  



Timmdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,069,078 - 131,089,169 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365366,432,802 - 6,451,485 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIMMDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383119,498,547 - 119,525,090 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3119,498,547 - 119,525,090 (+)EnsemblGRCh38hg38GRCh38
GRCh373119,217,394 - 119,243,937 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,700,058 - 120,725,818 (+)NCBINCBI36Build 36hg18NCBI36
Build 343120,700,068 - 120,725,825NCBI
Celera3117,625,927 - 117,651,681 (+)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3116,593,055 - 116,618,818 (+)NCBIHuRef
CHM1_13119,180,849 - 119,206,611 (+)NCBICHM1_1
T2T-CHM13v2.03122,218,265 - 122,244,808 (+)NCBIT2T-CHM13v2.0
Timmdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,318,205 - 38,343,075 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1638,318,709 - 38,343,025 (-)EnsemblGRCm39 Ensembl
GRCm381638,497,843 - 38,522,778 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,498,347 - 38,522,663 (-)EnsemblGRCm38mm10GRCm38
MGSCv371638,497,925 - 38,522,747 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361638,417,652 - 38,441,928 (-)NCBIMGSCv36mm8
Celera1638,908,448 - 38,933,313 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1626.86NCBI
Timmdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,734,554 - 75,759,026 (+)NCBIGRCr8
mRatBN7.21162,228,990 - 62,259,389 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,229,058 - 62,254,699 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,041,555 - 71,066,027 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,703,812 - 63,728,284 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,754,861 - 62,779,091 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,790,801 - 64,815,484 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,790,801 - 64,815,477 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,288,390 - 67,318,871 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,007,362 - 64,031,773 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11164,064,950 - 64,089,363 (+)NCBI
Celera1161,731,626 - 61,755,761 (+)NCBICelera
Cytogenetic Map11q21NCBI
Timmdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542719,209,857 - 19,235,097 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542719,208,029 - 19,234,763 (+)NCBIChiLan1.0ChiLan1.0
TIMMDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,476,044 - 117,501,619 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13117,480,812 - 117,506,397 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,621,164 - 116,646,776 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13123,533,675 - 123,559,348 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,533,675 - 123,559,348 (+)Ensemblpanpan1.1panPan2
TIMMDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13323,153,988 - 23,175,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3323,154,225 - 23,175,083 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3323,184,452 - 23,205,650 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03323,392,642 - 23,413,722 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3323,392,646 - 23,440,205 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13323,194,897 - 23,216,183 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03323,230,493 - 23,251,755 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03323,799,928 - 23,821,209 (+)NCBIUU_Cfam_GSD_1.0
TIMMDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13140,730,495 - 140,758,607 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113140,728,559 - 140,758,698 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TIMMDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,306,440 - 61,331,639 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,306,764 - 61,331,882 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041104,994,069 - 105,018,878 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Timmdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473128,658,065 - 28,680,252 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473128,657,663 - 28,680,448 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_021727959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040270578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_040270578   ⟹   XP_040126512
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602131,069,078 - 131,089,169 (-)NCBI
Protein RefSeqs XP_040126512 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3271405 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040126512   ⟸   XM_040270578



Database
Acc Id
Source(s)
NCBI Gene Timmdc1 ENTREZGENE