Timmdc1 (translocase of inner mitochondrial membrane domain containing 1)

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Gene: Timmdc1 (translocase of inner mitochondrial membrane domain containing 1) Ictidomys tridecemlineatus

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Symbol:

Timmdc1

Name:

translocase of inner mitochondrial membrane domain containing 1

RGD ID:

12718662

Description:

ASSOCIATED WITH Leigh disease (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); nuclear type mitochondrial complex I deficiency 31 (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

complex I assembly factor TIMMDC1, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	131,069,078 - 131,089,169 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936536	6,432,802 - 6,451,485 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Leigh disease (ISO)

nuclear type mitochondrial complex I deficiency 1 (ISO)

nuclear type mitochondrial complex I deficiency 31 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrion (ISO)

nucleoplasm (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Timmdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	131,069,078 - 131,089,169 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936536	6,432,802 - 6,451,485 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TIMMDC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	119,498,547 - 119,525,090 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	119,498,547 - 119,525,090 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	119,217,394 - 119,243,937 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	120,700,058 - 120,725,818 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	120,700,068 - 120,725,825	NCBI
Celera	3	117,625,927 - 117,651,681 (+)	NCBI		Celera
Cytogenetic Map	3	q13.33	NCBI
HuRef	3	116,593,055 - 116,618,818 (+)	NCBI		HuRef
CHM1_1	3	119,180,849 - 119,206,611 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	122,218,265 - 122,244,808 (+)	NCBI		T2T-CHM13v2.0

Timmdc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	38,318,205 - 38,343,075 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	38,318,709 - 38,343,025 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	38,497,843 - 38,522,778 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	38,498,347 - 38,522,663 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	38,497,925 - 38,522,747 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	38,417,652 - 38,441,928 (-)	NCBI		MGSCv36	mm8
Celera	16	38,908,448 - 38,933,313 (-)	NCBI		Celera
Cytogenetic Map	16	B4	NCBI
cM Map	16	26.86	NCBI

Timmdc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	75,734,554 - 75,759,026 (+)	NCBI		GRCr8
mRatBN7.2	11	62,228,990 - 62,259,389 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	62,229,058 - 62,254,699 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	71,041,555 - 71,066,027 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	63,703,812 - 63,728,284 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	62,754,861 - 62,779,091 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	64,790,801 - 64,815,484 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	64,790,801 - 64,815,477 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	67,288,390 - 67,318,871 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	64,007,362 - 64,031,773 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	64,064,950 - 64,089,363 (+)	NCBI
Celera	11	61,731,626 - 61,755,761 (+)	NCBI		Celera
Cytogenetic Map	11	q21	NCBI

Timmdc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	19,209,857 - 19,235,097 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	19,208,029 - 19,234,763 (+)	NCBI	ChiLan1.0	ChiLan1.0

TIMMDC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	117,476,044 - 117,501,619 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	117,480,812 - 117,506,397 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	116,621,164 - 116,646,776 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	123,533,675 - 123,559,348 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	123,533,675 - 123,559,348 (+)	Ensembl	panpan1.1		panPan2

TIMMDC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	23,153,988 - 23,175,412 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	23,154,225 - 23,175,083 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	23,184,452 - 23,205,650 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	23,392,642 - 23,413,722 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	23,392,646 - 23,440,205 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	23,194,897 - 23,216,183 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	23,230,493 - 23,251,755 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	23,799,928 - 23,821,209 (+)	NCBI		UU_Cfam_GSD_1.0

TIMMDC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	140,730,495 - 140,758,607 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	140,728,559 - 140,758,698 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TIMMDC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	61,306,440 - 61,331,639 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	61,306,764 - 61,331,882 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	104,994,069 - 105,018,878 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Timmdc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	28,658,065 - 28,680,252 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	28,657,663 - 28,680,448 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021727959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_040270578 ⟹ XP_040126512

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	131,069,078 - 131,089,169 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_040126512	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3271405	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_040126512 ⟸ XM_040270578

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Timmdc1	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM